MD06G1008700.v1.1

Occurs in almost all aerobically respiring organisms and serves to protect cells from the toxic effects of hydrogen peroxide

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
Physical Location & Seq
Reverse (-)
947004 .. 952142
5139 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1008700.v1.1.491

Sequence Viewer

Length: 1467 bp
ATGTACCGCCCTTCAAGTGCTTTCAATTCCCCGTTCTGGACCACCAATGCCGGTGCTCCAGTTTCGAACAACAACTCTTCTCTCACTGTAGGACCCAGAGGTCCGGTTCTGCTTGAGGACTACCATCTGGTGGAGAAACTCGCCAACTTTGATAGAGAACGGATCCCAGAGCGTGTTGTCCATGCTAGGGGAGCCAGTGCAAAAGGTTTCTTTGAGGTCACTCATGATATTTCTCACCTTTCATGTGCTGACTTCCTTCGAGCCCCTGGAGTTCAGACACCTGTCATTGTGCGTTTCTCCACTGTTATCCATGAGCGTGGCAGCCCTGAAACCATAAGGGATCCTCGTGGTTTTGCAGTGAAGTTTTACACCAGAGAGGGTAATTGGGACTTGGTGGGAAACAATTTCCCCGTCTTTTTTGTCCGTGATGCAATGAAATTCCCGGACGTGATCCATGCTTTCAAACCGAACCCTAAGTCCCACATCCAAGAATATTGGAGGGTCCTTGACTTCTTATCTCACCATCCAGAAAGCCTGCTCACGTTCGCCTTCCTATTCGATGACGTGGGAGTTCCACAAGATTACAGGCACATGGAAGGCTTTGGTGTACACGCCTATACTCTTATCAGCAAGGCCGGGAAGGTACACTACGTGAAATTTCATTGGAAGCCCACTTGTGGAGTCAAGTGTTTGTTGGAGGACGAGGCTATTAAGGTTGGAGGAGCTAATCACAGCCACGCTACCAAGGATCTCTATGACTCAATTGAAGCTGGCAACTACCCGGAGTGGAAACTTTTTATTCAGATAATGGATCCTGATCATGAAGACAGATTTGACTTTGACCCACTTGATGATACTAAGACCTGGCCCGAAGATCTTCTTCCCCTGCAGCCTGTTGGCCGTTTGGTACTGAATAAGAACATTGATAACTTCTTTGCAGAGAATGAACAACTTGCTTTCAACCCGGCCCTTGTTGTCCCTGGTATCTATTATTCAAATGATAAGATGCTCCAAACTCGACTCTTCGCCTATTCTGATACTCAGAGGCACCGTCTTGGCCCCAACTATCTGCAGCTCCCAGTTAATGCTCCCAAGTGTGCTCATCACAACAATCACTATGACGGATCTATGAATTTCATGCACAGAGATGAGGAGATTGACTACTTCCCATCAAGGTTTGATCCTGTTCGCCATGCTGAGACCTTCCCAATTCCTTCTAATATTTTCACTGGAAAGCGTGAGAAGTGCGTCATTGAGAAGGAGAACAACTTCAAGCAACCTGGAGAGAGATACAGATCTTGGGCACCCGACAGGCAAGAGCGATTCCTCCACCGATGGGTTGATGTCCTATCCGAACCTCGTGTCACCCATGAAATTCGCAGCATTTGGATCTCATACTGGTCTCAGGCTGACCGATCCTTTGGTCAAAAACTGGCGTCTCGTCTTAACGTGAGGCCGAGCATTTGA

Protein Analysis

489

Amino Acids

56.51

Weight (kDa)

6.56

Isoelectric Point (pI)

42.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Catalase PF00199 14 - 394 9e-176 Catalase
Catalase-rel PF06628 419 - 482 4.2e-13 Catalase-related immune-responsive
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018285)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 99
AccB1I GGYRCC 2 cut(s) 1047, 1303
AccB7I CCANNNNNTGG 1 cut(s) 130
AciI CCGC 1 cut(s) 7
AcoI YGGCCR 1 cut(s) 898
AcsI RAATTY 4 cut(s) 437, 656, 1132, 1374
AcyI GRCGYC 1 cut(s) 1436
AdeI CACNNNGTG 1 cut(s) 652
AfaI GTAC 4 cut(s) 5, 609, 645, 909
AfiI CCNNNNNNNGG 5 cut(s) 36, 130, 187, 677, 1336
AgsI TTSAA 7 cut(s) 15, 25, 463, 767, 961, 996, 1273
AjiI CACGTC 2 cut(s) 448, 565
AjnI CCWGG 4 cut(s) 265, 863, 979, 1279
AloI GAACNNNNNNTCC 2 cut(s) 461, 493
AluBI AGCT 3 cut(s) 725, 770, 1075
AluI AGCT 3 cut(s) 725, 770, 1075
Alw21I GWGCWC 2 cut(s) 58, 1102
Alw26I GTCTC 3 cut(s) 1193, 1407, 1443
AoxI GGCC 6 cut(s) 633, 866, 898, 966, 1057, 1454
ApeKI GCWGC 4 cut(s) 321, 889, 1072, 1380
ApoI RAATTY 4 cut(s) 437, 656, 1132, 1374
ArsI GACNNNNNNTTYG 6 cut(s) 461, 493, 1347, 1379, 1403, 1435
Asp700I GAANNNNTTC 2 cut(s) 876, 1268
AspS9I GGNCC 7 cut(s) 39, 92, 101, 502, 867, 967, 1058
AsuC2I CCSGG 4 cut(s) 443, 637, 782, 965
AsuHPI GGTGA 3 cut(s) 227, 512, 1357
AsuII TTCGAA 1 cut(s) 65
AvaII GGWCC 4 cut(s) 39, 92, 101, 502
BaeGI GKGCMC 1 cut(s) 1306
BamHI GGATCC 3 cut(s) 162, 340, 811
BanI GGYRCC 2 cut(s) 1047, 1303
BanII GRGCYC 1 cut(s) 265
BarI GAAGNNNNNNTAC 2 cut(s) 632, 664
BauI CACGAG 2 cut(s) 345, 1359
BbsI GAAGAC 1 cut(s) 831
Bbv12I GWGCWC 2 cut(s) 58, 1102
BbvI GCAGC 4 cut(s) 333, 901, 1084, 1392
BccI CCATC 4 cut(s) 132, 531, 1177, 1329
BceAI ACGGC 1 cut(s) 885
BciT130I CCWGG 4 cut(s) 267, 865, 981, 1281
BclI TGATCA 1 cut(s) 817
BcnI CCSGG 4 cut(s) 443, 637, 782, 965
BcoDI GTCTC 3 cut(s) 1193, 1407, 1443
BfaI CTAG 1 cut(s) 186
BfmI CTRYAG 3 cut(s) 87, 887, 1070
BglII AGATCT 2 cut(s) 874, 1295
BisI GCNGC 4 cut(s) 322, 890, 1073, 1381
BlsI GCNGC 4 cut(s) 323, 891, 1074, 1382
Bme1390I CCNGG 8 cut(s) 267, 443, 637, 782, 865, 965, 981, 1281
Bme18I GGWCC 4 cut(s) 39, 92, 101, 502
BmgBI CACGTC 2 cut(s) 448, 565
BmgT120I GGNCC 7 cut(s) 39, 92, 101, 502, 867, 967, 1058
BmiI GGNNCC 9 cut(s) 94, 164, 193, 342, 503, 813, 1049, 1060, 1305
BmrFI CCNGG 8 cut(s) 267, 443, 637, 782, 865, 965, 981, 1281
BmrI ACTGGG 1 cut(s) 1073
BmsI GCATC 2 cut(s) 418, 996
BmuI ACTGGG 1 cut(s) 1073
BoxI GACNNNNGTC 1 cut(s) 281
BpiI GAAGAC 1 cut(s) 831
BpmI CTGGAG 3 cut(s) 42, 288, 1302
Bpu14I TTCGAA 1 cut(s) 65
BpuEI CTTGAG 1 cut(s) 134
BpuMI CCSGG 4 cut(s) 443, 637, 782, 965
BsaAI YACGTR 1 cut(s) 652
BsaBI GATNNNNATC 2 cut(s) 816, 1294
BsaHI GRCGYC 1 cut(s) 1436
BsaI GGTCTC 2 cut(s) 1193, 1407
BsaJI CCNNGG 3 cut(s) 265, 744, 979
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 130, 187, 677, 1336
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 6 cut(s) 59, 195, 1079, 1234, 1403, 1437
Bse3DI GCAATG 1 cut(s) 438
Bse8I GATNNNNATC 2 cut(s) 816, 1294
BseBI CCWGG 4 cut(s) 267, 865, 981, 1281
BseDI CCNNGG 3 cut(s) 265, 744, 979
BseGI GGATG 2 cut(s) 483, 523
BseJI GATNNNNATC 2 cut(s) 816, 1294
BseLI CCNNNNNNNGG 5 cut(s) 36, 130, 187, 677, 1336
BseMI GCAATG 1 cut(s) 438
BseMII CTCAG 3 cut(s) 1055, 1188, 1418
BseNI ACTGG 6 cut(s) 59, 195, 1079, 1234, 1403, 1437
BseRI GAGGAG 2 cut(s) 735, 1166
BseSI GKGCMC 1 cut(s) 1306
BseXI GCAGC 4 cut(s) 333, 901, 1084, 1392
BshFI GGCC 6 cut(s) 635, 868, 900, 968, 1059, 1456
BshNI GGYRCC 2 cut(s) 1047, 1303
BsiHKAI GWGCWC 2 cut(s) 58, 1102
BsiSI CCGG 6 cut(s) 51, 104, 443, 636, 782, 965
BslFI GGGAC 3 cut(s) 401, 463, 962
BslI CCNNNNNNNGG 5 cut(s) 36, 130, 187, 677, 1336
BsmAI GTCTC 3 cut(s) 1193, 1407, 1443
BsmBI CGTCTC 1 cut(s) 1443
BsmFI GGGAC 3 cut(s) 401, 463, 962
BsnI GGCC 6 cut(s) 635, 868, 900, 968, 1059, 1456
Bso31I GGTCTC 2 cut(s) 1193, 1407
Bsp119I TTCGAA 1 cut(s) 65
Bsp1286I GDGCHC 4 cut(s) 58, 265, 1102, 1306
Bsp1407I TGTACA 1 cut(s) 607
BspACI CCGC 1 cut(s) 7
BspANI GGCC 6 cut(s) 635, 868, 900, 968, 1059, 1456
BspCNI CTCAG 3 cut(s) 1054, 1189, 1417
BspHI TCATGA 2 cut(s) 223, 820
BspLI GGNNCC 9 cut(s) 94, 164, 193, 342, 503, 813, 1049, 1060, 1305
BspMAI CTGCAG 2 cut(s) 891, 1074
BspT104I TTCGAA 1 cut(s) 65
BspT107I GGYRCC 2 cut(s) 1047, 1303
BspTNI GGTCTC 2 cut(s) 1193, 1407
BsrDI GCAATG 1 cut(s) 438
BsrFI RCCGGY 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 607
BsrI ACTGG 6 cut(s) 59, 195, 1079, 1234, 1403, 1437
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 3 cut(s) 265, 744, 979
BssNI GRCGYC 1 cut(s) 1436
BssSI CACGAG 2 cut(s) 345, 1359
BssT1I CCWWGG 1 cut(s) 744
Bst2BI CACGAG 2 cut(s) 345, 1359
Bst2UI CCWGG 4 cut(s) 267, 865, 981, 1281
Bst4CI ACNGT 3 cut(s) 88, 304, 1052
Bst6I CTCTTC 2 cut(s) 82, 1028
BstACI GRCGYC 1 cut(s) 1436
BstAUI TGTACA 1 cut(s) 607
BstBAI YACGTR 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 65
BstC8I GCNNGC 2 cut(s) 536, 772
BstDEI CTNAG 5 cut(s) 474, 858, 1041, 1197, 1404
BstF5I GGATG 2 cut(s) 483, 523
BstMAI GTCTC 3 cut(s) 1193, 1407, 1443
BstMWI GCNNNNNNNGC 1 cut(s) 191
BstNI CCWGG 4 cut(s) 267, 865, 981, 1281
BstPAI GACNNNNGTC 1 cut(s) 281
BstSCI CCNGG 8 cut(s) 265, 441, 635, 780, 863, 963, 979, 1279
BstSFI CTRYAG 3 cut(s) 87, 887, 1070
BstSLI GKGCMC 1 cut(s) 1306
BstV1I GCAGC 4 cut(s) 333, 901, 1084, 1392
BstV2I GAAGAC 1 cut(s) 831
BstX2I RGATCY 8 cut(s) 162, 340, 748, 811, 874, 1124, 1295, 1389
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 8 cut(s) 162, 340, 748, 811, 874, 1124, 1295, 1389
BsuRI GGCC 6 cut(s) 635, 868, 900, 968, 1059, 1456
BtrI CACGTC 2 cut(s) 448, 565
BtsCI GGATG 2 cut(s) 483, 523
BtsI GCAGTG 1 cut(s) 363
BtsIMutI CAGTG 5 cut(s) 84, 202, 300, 363, 1227
Cac8I GCNNGC 2 cut(s) 536, 772
CciI TCATGA 2 cut(s) 223, 820
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 7 cut(s) 39, 92, 101, 502, 867, 967, 1058
CseI GACGC 2 cut(s) 1237, 1425
Csp6I GTAC 4 cut(s) 4, 608, 644, 908
CviQI GTAC 4 cut(s) 4, 608, 644, 908
DdeI CTNAG 5 cut(s) 474, 858, 1041, 1197, 1404
DraIII CACNNNGTG 1 cut(s) 652
DrdI GACNNNNNNGTC 1 cut(s) 99
DseDI GACNNNNNNGTC 1 cut(s) 99
EaeI YGGCCR 1 cut(s) 898
Eam1104I CTCTTC 2 cut(s) 82, 1028
EarI CTCTTC 2 cut(s) 82, 1028
Eco130I CCWWGG 1 cut(s) 744
Eco24I GRGCYC 1 cut(s) 265
Eco31I GGTCTC 2 cut(s) 1193, 1407
Eco47I GGWCC 4 cut(s) 39, 92, 101, 502
EcoO109I RGGNCCY 2 cut(s) 92, 502
EcoRII CCWGG 4 cut(s) 265, 863, 979, 1279
EcoT14I CCWWGG 1 cut(s) 744
EcoT38I GRGCYC 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 744
Esp3I CGTCTC 1 cut(s) 1443
FalI AAGNNNNNCTT 2 cut(s) 864, 896
FaqI GGGAC 3 cut(s) 401, 463, 962
FbaI TGATCA 1 cut(s) 817
Fnu4HI GCNGC 4 cut(s) 322, 890, 1073, 1381
FokI GGATG 2 cut(s) 470, 510
FriOI GRGCYC 1 cut(s) 265
Fsp4HI GCNGC 4 cut(s) 322, 890, 1073, 1381
FspBI CTAG 1 cut(s) 186
GluI GCNGC 4 cut(s) 322, 890, 1073, 1381
GsuI CTGGAG 3 cut(s) 42, 288, 1302
HaeIII GGCC 6 cut(s) 635, 868, 900, 968, 1059, 1456
HapII CCGG 6 cut(s) 51, 104, 443, 636, 782, 965
HgaI GACGC 2 cut(s) 1237, 1425
Hin1I GRCGYC 1 cut(s) 1436
HinfI GANTC 4 cut(s) 681, 758, 1020, 1323
HpaII CCGG 6 cut(s) 51, 104, 443, 636, 782, 965
HphI GGTGA 3 cut(s) 227, 512, 1357
Hpy166II GTNNAC 3 cut(s) 608, 610, 646
Hpy188I TCNGA 5 cut(s) 276, 804, 1036, 1044, 1354
Hpy188III TCNNGA 5 cut(s) 37, 224, 527, 815, 821
Hpy8I GTNNAC 3 cut(s) 608, 610, 646
HpyAV CCTTC 8 cut(s) 21, 266, 559, 590, 634, 1213, 1224, 1252
HpyCH4III ACNGT 3 cut(s) 88, 304, 1052
HpyCH4IV ACGT 5 cut(s) 447, 542, 564, 651, 1449
HpyCH4V TGCA 7 cut(s) 200, 356, 431, 889, 938, 1072, 1141
HpyF10VI GCNNNNNNNGC 1 cut(s) 191
HpyF3I CTNAG 5 cut(s) 474, 858, 1041, 1197, 1404
HpySE526I ACGT 5 cut(s) 447, 542, 564, 651, 1449
Hsp92I GRCGYC 1 cut(s) 1436
Ksp22I TGATCA 1 cut(s) 817
LmnI GCTCC 6 cut(s) 61, 191, 722, 1014, 1080, 1093
Lsp1109I GCAGC 4 cut(s) 333, 901, 1084, 1392
LweI GCATC 2 cut(s) 418, 996
MaeI CTAG 1 cut(s) 186
MaeII ACGT 5 cut(s) 447, 542, 564, 651, 1449
MaeIII GTNAC 2 cut(s) 217, 1363
MboII GAAGA 6 cut(s) 69, 836, 869, 872, 884, 1015
MfeI CAATTG 1 cut(s) 762
MflI RGATCY 8 cut(s) 162, 340, 748, 811, 874, 1124, 1295, 1389
MhlI GDGCHC 4 cut(s) 58, 265, 1102, 1306
MluCI AATT 9 cut(s) 25, 382, 403, 437, 656, 762, 1132, 1209, 1374
MlyI GAGTC 3 cut(s) 690, 752, 1014
MmeI TCCRAC 2 cut(s) 675, 697
MroXI GAANNNNTTC 2 cut(s) 876, 1268
MseI TTAA 3 cut(s) 711, 1083, 1446
MslI CAYNNNNRTG 2 cut(s) 315, 1146
MspI CCGG 6 cut(s) 51, 104, 443, 636, 782, 965
MspR9I CCNGG 8 cut(s) 267, 443, 637, 782, 865, 965, 981, 1281
MunI CAATTG 1 cut(s) 762
MvaI CCWGG 4 cut(s) 267, 865, 981, 1281
MwoI GCNNNNNNNGC 1 cut(s) 191
NciI CCSGG 4 cut(s) 443, 637, 782, 965
NlaIV GGNNCC 9 cut(s) 94, 164, 193, 342, 503, 813, 1049, 1060, 1305
NmuCI GTSAC 2 cut(s) 217, 1363
NspV TTCGAA 1 cut(s) 65
PagI TCATGA 2 cut(s) 223, 820
PdmI GAANNNNTTC 2 cut(s) 876, 1268
PfeI GAWTC 1 cut(s) 1323
PflMI CCANNNNNTGG 1 cut(s) 130
PfoI TCCNGGA 1 cut(s) 441
PkrI GCNGC 4 cut(s) 323, 891, 1074, 1382
PleI GAGTC 3 cut(s) 689, 752, 1014
PpsI GAGTC 3 cut(s) 689, 752, 1014
Ppu21I YACGTR 1 cut(s) 652
PpuMI RGGWCCY 2 cut(s) 92, 502
PshAI GACNNNNGTC 1 cut(s) 281
Psp5II RGGWCCY 2 cut(s) 92, 502
Psp6I CCWGG 4 cut(s) 265, 863, 979, 1279
PspGI CCWGG 4 cut(s) 265, 863, 979, 1279
PspN4I GGNNCC 9 cut(s) 94, 164, 193, 342, 503, 813, 1049, 1060, 1305
PspPI GGNCC 7 cut(s) 39, 92, 101, 502, 867, 967, 1058
PspPPI RGGWCCY 2 cut(s) 92, 502
PstI CTGCAG 2 cut(s) 891, 1074
PsuI RGATCY 8 cut(s) 162, 340, 748, 811, 874, 1124, 1295, 1389
RsaI GTAC 4 cut(s) 5, 609, 645, 909
RsaNI GTAC 4 cut(s) 4, 608, 644, 908
RseI CAYNNNNRTG 2 cut(s) 315, 1146
SaqAI TTAA 3 cut(s) 711, 1083, 1446
SatI GCNGC 4 cut(s) 322, 890, 1073, 1381
Sau96I GGNCC 7 cut(s) 39, 92, 101, 502, 867, 967, 1058
SchI GAGTC 3 cut(s) 690, 752, 1014
ScrFI CCNGG 8 cut(s) 267, 443, 637, 782, 865, 965, 981, 1281
SduI GDGCHC 4 cut(s) 58, 265, 1102, 1306
SfaNI GCATC 2 cut(s) 418, 996
SfcI CTRYAG 3 cut(s) 87, 887, 1070
SfuI TTCGAA 1 cut(s) 65
SinI GGWCC 4 cut(s) 39, 92, 101, 502
SmiMI CAYNNNNRTG 2 cut(s) 315, 1146
SmlI CTYRAG 1 cut(s) 113
SmoI CTYRAG 1 cut(s) 113
Sse9I AATT 9 cut(s) 25, 382, 403, 437, 656, 762, 1132, 1209, 1374
SsiI CCGC 1 cut(s) 7
SspI AATATT 2 cut(s) 494, 1222
SspMI CTAG 1 cut(s) 186
StyD4I CCNGG 8 cut(s) 265, 441, 635, 780, 863, 963, 979, 1279
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 3 cut(s) 88, 304, 1052
TaiI ACGT 5 cut(s) 450, 545, 567, 654, 1452
TaqI TCGA 4 cut(s) 65, 259, 558, 1018
TaqII GACCGA 1 cut(s) 1428
TasI AATT 9 cut(s) 25, 382, 403, 437, 656, 762, 1132, 1209, 1374
TatI WGTACW 1 cut(s) 607
TfiI GAWTC 1 cut(s) 1323
Tru1I TTAA 3 cut(s) 711, 1083, 1446
Tru9I TTAA 3 cut(s) 711, 1083, 1446
TscAI CASTG 5 cut(s) 91, 202, 307, 363, 1234
TseFI GTSAC 2 cut(s) 217, 1363
TseI GCWGC 4 cut(s) 321, 889, 1072, 1380
Tsp45I GTSAC 2 cut(s) 217, 1363
TspDTI ATGAA 8 cut(s) 231, 449, 650, 837, 960, 1126, 1145, 1386
TspGWI ACGGA 3 cut(s) 175, 413, 1137
TspRI CASTG 5 cut(s) 91, 202, 307, 363, 1234
Van91I CCANNNNNTGG 1 cut(s) 130
VpaK11BI GGWCC 4 cut(s) 39, 92, 101, 502
XapI RAATTY 4 cut(s) 437, 656, 1132, 1374
XmnI GAANNNNTTC 2 cut(s) 876, 1268
XspI CTAG 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.