MD06G1088900.v1.1

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0028295
Physical Location & Seq
Forward (+)
21702997 .. 21705180
2184 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1088900.v1.1.491

Sequence Viewer

Length: 642 bp
ATGAACAGGCTAGCACAACAACCTATCAAAGCCTTAGCGCGTCTATGTCTCTACCCAGAAGCCCTAAAAGCCTCCGCATCAACCTCCCCTCTCAGCCCCAACCTCACAGACCAAACCTACGCCCTTTTTCTCAAGTCCGGCCACCGCCTGGACCCCTTCCTCGCCTCCGCTCTCATTTCGAAATTTTCCAAGTCGGGTTACTTCTCCCACGCCCTCCGGTTCCTAAACGACGCTCCAGAACCATATACAGTCTCCTACAACGCCCTCATTGCTAGATTGGCCCAGTTTGGACCACCCGGGCCGATTTTTGGGCTATTCGATTGGTTGAGATATGTGGGCTTAAGGCCAGATGGGTTTACAGTGAGTGCTCTGGTGAAAGCGTGTGATGGGTTGGAGGAGAATGAGATTGCCCATGGGGTTTGTTTGAGATTGGGGTTTGGTTATGGGGGTTTTGTGGTTAGTGGGTTGGTGGAGAATTATATGACGATTGGGGATATTGGGTCGGCAGCAGAGAATTGCTTTGGGGAGTGTTTGGTTGCGGACAATGTGGCTTGGACTGCTATGATTTCTGGGTATGTTTGGAGCGGCAAGTTGGAGAAGAGTAAGGAGGTGTTTGGGGAGATGAGGAGGTTGGGGAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

214

Amino Acids

23.22

Weight (kDa)

7.62

Isoelectric Point (pI)

35.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR PF01535 183 - 212 2.1e-08 PPR repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028295)

Species Orthologous Gene IDs
malus_domestica MD06G1088900.v1.1
pyrus_communis pycom06g08480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 148
AccBSI CCGCTC 2 cut(s) 170, 585
AccII CGCG 1 cut(s) 40
AciI CCGC 5 cut(s) 75, 145, 168, 539, 585
AcoI YGGCCR 1 cut(s) 139
AcsI RAATTY 1 cut(s) 182
AfiI CCNNNNNNNGG 2 cut(s) 148, 308
AflII CTTAAG 1 cut(s) 340
AjnI CCWGG 1 cut(s) 147
Alw21I GWGCWC 1 cut(s) 370
Alw26I GTCTC 2 cut(s) 53, 256
Ama87I CYCGRG 1 cut(s) 296
AoxI GGCC 4 cut(s) 139, 279, 299, 344
ApeKI GCWGC 1 cut(s) 506
ApoI RAATTY 1 cut(s) 182
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 4 cut(s) 151, 280, 290, 299
AsuC2I CCSGG 2 cut(s) 297, 298
AsuHPI GGTGA 1 cut(s) 385
AsuII TTCGAA 1 cut(s) 179
AsuNHI GCTAGC 1 cut(s) 10
AvaI CYCGRG 1 cut(s) 296
AvaII GGWCC 2 cut(s) 151, 290
Bbv12I GWGCWC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 518
BccI CCATC 2 cut(s) 344, 380
BciT130I CCWGG 1 cut(s) 149
BcnI CCSGG 2 cut(s) 297, 298
BcoDI GTCTC 2 cut(s) 53, 256
BfaI CTAG 2 cut(s) 11, 273
BfrI CTTAAG 1 cut(s) 340
BisI GCNGC 2 cut(s) 507, 586
BlsI GCNGC 2 cut(s) 508, 587
Bme1390I CCNGG 3 cut(s) 149, 297, 298
Bme18I GGWCC 2 cut(s) 151, 290
BmeT110I CYCGRG 1 cut(s) 296
BmgT120I GGNCC 4 cut(s) 151, 280, 290, 299
BmiI GGNNCC 2 cut(s) 153, 221
BmrFI CCNGG 3 cut(s) 149, 297, 298
BmrI ACTGGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 86
BmtI GCTAGC 1 cut(s) 14
BmuI ACTGGG 1 cut(s) 277
BpmI CTGGAG 1 cut(s) 219
Bpu10I CCTNAGC 1 cut(s) 34
Bpu14I TTCGAA 1 cut(s) 179
BpuEI CTTGAG 1 cut(s) 116
BpuMI CCSGG 2 cut(s) 297, 298
BsaJI CCNNGG 2 cut(s) 296, 412
BsaWI WCCGGW 1 cut(s) 216
Bsc4I CCNNNNNNNGG 2 cut(s) 148, 308
Bse1I ACTGG 1 cut(s) 283
Bse3DI GCAATG 1 cut(s) 267
BseBI CCWGG 1 cut(s) 149
BseDI CCNNGG 2 cut(s) 296, 412
BseLI CCNNNNNNNGG 2 cut(s) 148, 308
BseMI GCAATG 1 cut(s) 267
BseMII CTCAG 1 cut(s) 106
BseNI ACTGG 1 cut(s) 283
BseRI GAGGAG 2 cut(s) 410, 640
BseXI GCAGC 1 cut(s) 518
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 4 cut(s) 141, 281, 301, 346
BsiHKAI GWGCWC 1 cut(s) 370
BsiHKCI CYCGRG 1 cut(s) 296
BsiSI CCGG 3 cut(s) 138, 217, 297
BslI CCNNNNNNNGG 2 cut(s) 148, 308
BsmAI GTCTC 2 cut(s) 53, 256
BsnI GGCC 4 cut(s) 141, 281, 301, 346
BsoBI CYCGRG 1 cut(s) 296
Bsp119I TTCGAA 1 cut(s) 179
Bsp1286I GDGCHC 1 cut(s) 370
Bsp19I CCATGG 1 cut(s) 412
BspACI CCGC 5 cut(s) 75, 145, 168, 539, 585
BspANI GGCC 4 cut(s) 141, 281, 301, 346
BspCNI CTCAG 1 cut(s) 105
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 153, 221
BspOI GCTAGC 1 cut(s) 14
BspT104I TTCGAA 1 cut(s) 179
BspTI CTTAAG 1 cut(s) 340
BsrBI CCGCTC 2 cut(s) 170, 585
BsrDI GCAATG 1 cut(s) 267
BsrI ACTGG 1 cut(s) 283
BssECI CCNNGG 2 cut(s) 296, 412
BssT1I CCWWGG 1 cut(s) 412
Bst2UI CCWGG 1 cut(s) 149
Bst4CI ACNGT 2 cut(s) 250, 361
Bst6I CTCTTC 1 cut(s) 593
BstAFI CTTAAG 1 cut(s) 340
BstBI TTCGAA 1 cut(s) 179
BstC8I GCNNGC 1 cut(s) 12
BstDEI CTNAG 2 cut(s) 34, 92
BstDSI CCRYGG 1 cut(s) 412
BstFNI CGCG 1 cut(s) 40
BstHHI GCGC 1 cut(s) 40
BstMAI GTCTC 2 cut(s) 53, 256
BstMWI GCNNNNNNNGC 4 cut(s) 68, 269, 278, 557
BstNI CCWGG 1 cut(s) 149
BstSCI CCNGG 3 cut(s) 147, 295, 296
BstUI CGCG 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 518
BsuRI GGCC 4 cut(s) 141, 281, 301, 346
BtgI CCRYGG 1 cut(s) 412
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 12
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 4 cut(s) 151, 280, 290, 299
Cfr9I CCCGGG 1 cut(s) 296
CseI GACGC 2 cut(s) 29, 239
CviAII CATG 1 cut(s) 413
DdeI CTNAG 2 cut(s) 34, 92
EaeI YGGCCR 1 cut(s) 139
Eam1104I CTCTTC 1 cut(s) 593
EarI CTCTTC 1 cut(s) 593
Eco130I CCWWGG 1 cut(s) 412
Eco47I GGWCC 2 cut(s) 151, 290
Eco88I CYCGRG 1 cut(s) 296
EcoRII CCWGG 1 cut(s) 147
EcoT14I CCWWGG 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 412
FaeI CATG 1 cut(s) 416
FatI CATG 1 cut(s) 412
Fnu4HI GCNGC 2 cut(s) 507, 586
Fsp4HI GCNGC 2 cut(s) 507, 586
FspBI CTAG 2 cut(s) 11, 273
GlaI GCGC 1 cut(s) 39
GluI GCNGC 2 cut(s) 507, 586
GsuI CTGGAG 1 cut(s) 219
HaeIII GGCC 4 cut(s) 141, 281, 301, 346
HapII CCGG 3 cut(s) 138, 217, 297
HgaI GACGC 2 cut(s) 29, 239
HhaI GCGC 1 cut(s) 40
Hin1II CATG 1 cut(s) 416
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HpaII CCGG 3 cut(s) 138, 217, 297
HphI GGTGA 1 cut(s) 385
Hpy166II GTNNAC 1 cut(s) 357
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 1 cut(s) 357
Hpy99I CGWCG 1 cut(s) 233
HpyAV CCTTC 1 cut(s) 166
HpyCH4III ACNGT 2 cut(s) 250, 361
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 269, 278, 557
HpyF3I CTNAG 2 cut(s) 34, 92
Hsp92II CATG 1 cut(s) 416
HspAI GCGC 1 cut(s) 38
LmnI GCTCC 2 cut(s) 238, 582
Lsp1109I GCAGC 1 cut(s) 518
LweI GCATC 1 cut(s) 86
MaeI CTAG 2 cut(s) 11, 273
MaeIII GTNAC 1 cut(s) 197
MbiI CCGCTC 2 cut(s) 170, 585
MboII GAAGA 1 cut(s) 610
MhlI GDGCHC 1 cut(s) 370
MluCI AATT 3 cut(s) 182, 475, 514
MmeI TCCRAC 2 cut(s) 372, 573
MseI TTAA 1 cut(s) 341
MspCI CTTAAG 1 cut(s) 340
MspI CCGG 3 cut(s) 138, 217, 297
MspR9I CCNGG 3 cut(s) 149, 297, 298
MvaI CCWGG 1 cut(s) 149
MvnI CGCG 1 cut(s) 40
MwoI GCNNNNNNNGC 4 cut(s) 68, 269, 278, 557
NciI CCSGG 2 cut(s) 297, 298
NcoI CCATGG 1 cut(s) 412
NheI GCTAGC 1 cut(s) 10
NlaIII CATG 1 cut(s) 416
NlaIV GGNNCC 2 cut(s) 153, 221
NspV TTCGAA 1 cut(s) 179
PflMI CCANNNNNTGG 1 cut(s) 148
PkrI GCNGC 2 cut(s) 508, 587
Psp6I CCWGG 1 cut(s) 147
PspGI CCWGG 1 cut(s) 147
PspN4I GGNNCC 2 cut(s) 153, 221
PspPI GGNCC 4 cut(s) 151, 280, 290, 299
SaqAI TTAA 1 cut(s) 341
SatI GCNGC 2 cut(s) 507, 586
Sau96I GGNCC 4 cut(s) 151, 280, 290, 299
ScrFI CCNGG 3 cut(s) 149, 297, 298
SduI GDGCHC 1 cut(s) 370
SetI ASST 6 cut(s) 25, 86, 105, 119, 612, 632
SfaNI GCATC 1 cut(s) 86
SfuI TTCGAA 1 cut(s) 179
SinI GGWCC 2 cut(s) 151, 290
SmaI CCCGGG 1 cut(s) 298
SmlI CTYRAG 2 cut(s) 131, 340
SmoI CTYRAG 2 cut(s) 131, 340
Sse9I AATT 3 cut(s) 182, 475, 514
SsiI CCGC 5 cut(s) 75, 145, 168, 539, 585
SspMI CTAG 2 cut(s) 11, 273
StyD4I CCNGG 3 cut(s) 147, 295, 296
StyI CCWWGG 1 cut(s) 412
TaaI ACNGT 2 cut(s) 250, 361
TaqI TCGA 2 cut(s) 179, 318
TasI AATT 3 cut(s) 182, 475, 514
TauI GCSGC 1 cut(s) 588
Tru1I TTAA 1 cut(s) 341
Tru9I TTAA 1 cut(s) 341
TscAI CASTG 1 cut(s) 366
TseI GCWGC 1 cut(s) 506
TspDTI ATGAA 1 cut(s) 17
TspMI CCCGGG 1 cut(s) 296
TspRI CASTG 1 cut(s) 366
Van91I CCANNNNNTGG 1 cut(s) 148
Vha464I CTTAAG 1 cut(s) 340
VpaK11BI GGWCC 2 cut(s) 151, 290
XapI RAATTY 1 cut(s) 182
XmaI CCCGGG 1 cut(s) 296
XspI CTAG 2 cut(s) 11, 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.