pycom06g08480

PPR repeat family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0028295
Physical Location & Seq
Forward (+)
13703177 .. 13704263
1087 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g08480.1

Sequence Viewer

Length: 966 bp
ATGTCTCTACCAGAAACCCTAAAAGCCTCCACATCAACCTCCTCTCTCAGCCCCAACCTCACAGACCAAACCTACGCCCTTTTTCTCAGGTCCGGCCACCGCCTGGACCCCTTCCTCGCCTCCGTTCTCATTTCGAAAATTTCCAAGTCGGGTTACTTCTCCCACGTCCTCCGGTTCCTAAACGACGCTCCAGAACCCGATACAGTCTCCTACAACGCCCTCATTGCTGGATTGGCCCAGTTTGGACCACCCGGACCCATTTTTGGGCTATTCGATTGGTTGAGGCACGTGGGCTTAAGGCCTGATGGGTTTGCAGTGAGTGCTCTGGTGAAAGCGTGTGATGGGTTGGAGAAGAATGAGGTTGCCCATGGGGTTTGTTTGAGATTGGGGTTTGGTTATGGGGGTTCTGTGGTTAGTGGGTTGGTGGAGAATTATATGAGGAATGGGGATGTTGGGTCGGCAGAGAATTGCTTTGGGGAGTGTTTGGTTGCGGACAATGTGGCTTGGACTGCTAGTAAGGAGGTGTTTGGGGAGATGAGGAGGTTGGGTTTGGAGTTGAATGAGTTTAGCTTGACTGCTGTGCTGGGTGGATTGTGTGATGAGAAGGAAGGGGAACAGATTCATGGGGTTGCTGTAAGGATGGGATTTTTATGCGGGTTTTCGGTTCATTTGAGTAATGCAATTATGAATATGTACTCTGGGTTACTGAACCAGATGTTGTTTCTTGGACTGAGAGGATATGAGCTGCTTATGATGATGTGGAAGCTTGGGAATTGTTTAGATATTAACGTTTTGTCGGCTATTGGATGGCCGGGAATATTGACACCCGGTAAACAAATCCAAGCACTCTGTCAGAAACTGGGGTGCTTACAGGTGGTTTCTGTTGGCAATCTGTTGATATTCATGTATGGGAAATGTGGGCAAATTGGTGATGCTAGGCGTGTGTTTGATGATTTGCTTTGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PPR PPR_2

Protein Analysis

322

Amino Acids

34.72

Weight (kDa)

5.7

Isoelectric Point (pI)

32.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 66 - 113 7.1e-06 PPR repeat family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028295)

Species Orthologous Gene IDs
malus_domestica MD06G1088900.v1.1
pyrus_communis pycom06g08480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 103
AciI CCGC 3 cut(s) 100, 491, 654
AclI AACGTT 1 cut(s) 789
AcoI YGGCCR 2 cut(s) 94, 809
AcsI RAATTY 1 cut(s) 138
AcvI CACGTG 1 cut(s) 289
AfaI GTAC 1 cut(s) 695
AfiI CCNNNNNNNGG 3 cut(s) 103, 263, 264
AflII CTTAAG 1 cut(s) 295
AgsI TTSAA 1 cut(s) 559
AjiI CACGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 102
AluBI AGCT 3 cut(s) 570, 745, 766
AluI AGCT 3 cut(s) 570, 745, 766
Alw21I GWGCWC 1 cut(s) 325
Alw26I GTCTC 2 cut(s) 9, 211
AlwNI CAGNNNCTG 1 cut(s) 859
AoxI GGCC 4 cut(s) 94, 234, 299, 809
ApeKI GCWGC 1 cut(s) 745
ApoI RAATTY 1 cut(s) 138
Asp700I GAANNNNTTC 1 cut(s) 618
AspS9I GGNCC 5 cut(s) 90, 106, 235, 245, 254
AsuC2I CCSGG 3 cut(s) 252, 813, 828
AsuHPI GGTGA 2 cut(s) 340, 941
AsuII TTCGAA 1 cut(s) 134
AvaII GGWCC 4 cut(s) 90, 106, 245, 254
BbrPI CACGTG 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 325
BbvI GCAGC 1 cut(s) 732
BccI CCATC 4 cut(s) 299, 335, 634, 801
BciT130I CCWGG 1 cut(s) 104
BcnI CCSGG 3 cut(s) 252, 813, 828
BcoDI GTCTC 2 cut(s) 9, 211
BfaI CTAG 2 cut(s) 513, 936
BfrI CTTAAG 1 cut(s) 295
BisI GCNGC 1 cut(s) 746
BlsI GCNGC 1 cut(s) 747
Bme1390I CCNGG 4 cut(s) 104, 252, 813, 828
Bme18I GGWCC 4 cut(s) 90, 106, 245, 254
BmgBI CACGTC 1 cut(s) 166
BmgT120I GGNCC 5 cut(s) 90, 106, 235, 245, 254
BmiI GGNNCC 3 cut(s) 108, 176, 256
BmrFI CCNGG 4 cut(s) 104, 252, 813, 828
BmrI ACTGGG 2 cut(s) 232, 869
BmsI GCATC 1 cut(s) 922
BmuI ACTGGG 2 cut(s) 232, 869
BpmI CTGGAG 1 cut(s) 174
Bpu14I TTCGAA 1 cut(s) 134
BpuMI CCSGG 3 cut(s) 252, 813, 828
BsaAI YACGTR 1 cut(s) 289
BsaJI CCNNGG 1 cut(s) 367
BsaWI WCCGGW 1 cut(s) 171
BsaXI ACNNNNNCTCC 2 cut(s) 532, 562
Bsc4I CCNNNNNNNGG 3 cut(s) 103, 263, 264
Bse1I ACTGG 2 cut(s) 238, 864
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 367
BseGI GGATG 3 cut(s) 454, 645, 812
BseLI CCNNNNNNNGG 3 cut(s) 103, 263, 264
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 3 cut(s) 61, 100, 722
BseNI ACTGG 2 cut(s) 238, 864
BseRI GAGGAG 2 cut(s) 31, 553
BseXI GCAGC 1 cut(s) 732
BseYI CCCAGC 1 cut(s) 583
BshFI GGCC 4 cut(s) 96, 236, 301, 811
BsiHKAI GWGCWC 1 cut(s) 325
BsiSI CCGG 5 cut(s) 93, 172, 252, 812, 828
BslI CCNNNNNNNGG 3 cut(s) 103, 263, 264
BsmAI GTCTC 2 cut(s) 9, 211
BsnI GGCC 4 cut(s) 96, 236, 301, 811
Bsp119I TTCGAA 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 325
Bsp19I CCATGG 1 cut(s) 367
BspACI CCGC 3 cut(s) 100, 491, 654
BspANI GGCC 4 cut(s) 96, 236, 301, 811
BspCNI CTCAG 3 cut(s) 60, 99, 723
BspLI GGNNCC 3 cut(s) 108, 176, 256
BspT104I TTCGAA 1 cut(s) 134
BspTI CTTAAG 1 cut(s) 295
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 2 cut(s) 238, 864
BssECI CCNNGG 1 cut(s) 367
BssT1I CCWWGG 1 cut(s) 367
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 205
BstAFI CTTAAG 1 cut(s) 295
BstAPI GCANNNNNTGC 1 cut(s) 320
BstBAI YACGTR 1 cut(s) 289
BstBI TTCGAA 1 cut(s) 134
BstDEI CTNAG 3 cut(s) 47, 86, 731
BstDSI CCRYGG 1 cut(s) 367
BstF5I GGATG 3 cut(s) 454, 645, 812
BstMAI GTCTC 2 cut(s) 9, 211
BstMWI GCNNNNNNNGC 4 cut(s) 224, 233, 320, 509
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 4 cut(s) 102, 250, 811, 826
BstV1I GCAGC 1 cut(s) 732
BsuRI GGCC 4 cut(s) 96, 236, 301, 811
BtgI CCRYGG 1 cut(s) 367
BtrI CACGTC 1 cut(s) 166
BtsCI GGATG 3 cut(s) 454, 645, 812
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
CaiI CAGNNNCTG 1 cut(s) 859
Cfr13I GGNCC 5 cut(s) 90, 106, 235, 245, 254
CseI GACGC 1 cut(s) 194
Csp6I GTAC 1 cut(s) 694
CviAII CATG 3 cut(s) 368, 623, 904
CviQI GTAC 1 cut(s) 694
DdeI CTNAG 3 cut(s) 47, 86, 731
EaeI YGGCCR 2 cut(s) 94, 809
Eco130I CCWWGG 1 cut(s) 367
Eco147I AGGCCT 1 cut(s) 301
Eco47I GGWCC 4 cut(s) 90, 106, 245, 254
Eco72I CACGTG 1 cut(s) 289
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 367
ErhI CCWWGG 1 cut(s) 367
FaeI CATG 3 cut(s) 371, 626, 907
FatI CATG 3 cut(s) 367, 622, 903
FauI CCCGC 1 cut(s) 647
Fnu4HI GCNGC 1 cut(s) 746
FokI GGATG 3 cut(s) 461, 652, 819
Fsp4HI GCNGC 1 cut(s) 746
FspBI CTAG 2 cut(s) 513, 936
GluI GCNGC 1 cut(s) 746
GsaI CCCAGC 1 cut(s) 587
GsuI CTGGAG 1 cut(s) 174
HaeIII GGCC 4 cut(s) 96, 236, 301, 811
HapII CCGG 5 cut(s) 93, 172, 252, 812, 828
HgaI GACGC 1 cut(s) 194
Hin1II CATG 3 cut(s) 371, 626, 907
HindIII AAGCTT 1 cut(s) 764
HinfI GANTC 1 cut(s) 619
HpaII CCGG 5 cut(s) 93, 172, 252, 812, 828
HphI GGTGA 2 cut(s) 340, 941
Hpy166II GTNNAC 1 cut(s) 833
Hpy188I TCNGA 1 cut(s) 855
Hpy188III TCNNGA 1 cut(s) 191
Hpy8I GTNNAC 1 cut(s) 833
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 121, 598, 602
HpyCH4III ACNGT 1 cut(s) 205
HpyCH4IV ACGT 3 cut(s) 165, 288, 789
HpyCH4V TGCA 2 cut(s) 314, 680
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 233, 320, 509
HpyF3I CTNAG 3 cut(s) 47, 86, 731
HpySE526I ACGT 3 cut(s) 165, 288, 789
Hsp92II CATG 3 cut(s) 371, 626, 907
LmnI GCTCC 1 cut(s) 193
Lsp1109I GCAGC 1 cut(s) 732
LweI GCATC 1 cut(s) 922
MaeI CTAG 2 cut(s) 513, 936
MaeII ACGT 3 cut(s) 165, 288, 789
MaeIII GTNAC 2 cut(s) 152, 702
MboII GAAGA 1 cut(s) 364
MhlI GDGCHC 1 cut(s) 325
MluCI AATT 6 cut(s) 138, 430, 466, 681, 772, 924
MmeI TCCRAC 1 cut(s) 327
MroXI GAANNNNTTC 1 cut(s) 618
MseI TTAA 2 cut(s) 296, 786
MspCI CTTAAG 1 cut(s) 295
MspI CCGG 5 cut(s) 93, 172, 252, 812, 828
MspR9I CCNGG 4 cut(s) 104, 252, 813, 828
MvaI CCWGG 1 cut(s) 104
MwoI GCNNNNNNNGC 4 cut(s) 224, 233, 320, 509
NciI CCSGG 3 cut(s) 252, 813, 828
NcoI CCATGG 1 cut(s) 367
NlaIII CATG 3 cut(s) 371, 626, 907
NlaIV GGNNCC 3 cut(s) 108, 176, 256
NspV TTCGAA 1 cut(s) 134
PceI AGGCCT 1 cut(s) 301
PdmI GAANNNNTTC 1 cut(s) 618
PfeI GAWTC 1 cut(s) 619
PflMI CCANNNNNTGG 1 cut(s) 103
PkrI GCNGC 1 cut(s) 747
PmaCI CACGTG 1 cut(s) 289
PmlI CACGTG 1 cut(s) 289
Ppu21I YACGTR 1 cut(s) 289
Psp1406I AACGTT 1 cut(s) 789
Psp6I CCWGG 1 cut(s) 102
PspCI CACGTG 1 cut(s) 289
PspFI CCCAGC 1 cut(s) 583
PspGI CCWGG 1 cut(s) 102
PspN4I GGNNCC 3 cut(s) 108, 176, 256
PspPI GGNCC 5 cut(s) 90, 106, 235, 245, 254
PstNI CAGNNNCTG 1 cut(s) 859
RsaI GTAC 1 cut(s) 695
RsaNI GTAC 1 cut(s) 694
SaqAI TTAA 2 cut(s) 296, 786
SatI GCNGC 1 cut(s) 746
Sau96I GGNCC 5 cut(s) 90, 106, 235, 245, 254
ScrFI CCNGG 4 cut(s) 104, 252, 813, 828
SduI GDGCHC 1 cut(s) 325
SfaNI GCATC 1 cut(s) 922
SfuI TTCGAA 1 cut(s) 134
SinI GGWCC 4 cut(s) 90, 106, 245, 254
SmlI CTYRAG 1 cut(s) 295
SmoI CTYRAG 1 cut(s) 295
Sse9I AATT 6 cut(s) 138, 430, 466, 681, 772, 924
SseBI AGGCCT 1 cut(s) 301
SsiI CCGC 3 cut(s) 100, 491, 654
SspI AATATT 1 cut(s) 819
SspMI CTAG 2 cut(s) 513, 936
StuI AGGCCT 1 cut(s) 301
StyD4I CCNGG 4 cut(s) 102, 250, 811, 826
StyI CCWWGG 1 cut(s) 367
TaaI ACNGT 1 cut(s) 205
TaiI ACGT 3 cut(s) 168, 291, 792
TaqI TCGA 2 cut(s) 134, 273
TasI AATT 6 cut(s) 138, 430, 466, 681, 772, 924
TatI WGTACW 1 cut(s) 693
TfiI GAWTC 1 cut(s) 619
Tru1I TTAA 2 cut(s) 296, 786
Tru9I TTAA 2 cut(s) 296, 786
TscAI CASTG 1 cut(s) 321
TseI GCWGC 1 cut(s) 745
TspDTI ATGAA 4 cut(s) 611, 656, 701, 892
TspGWI ACGGA 1 cut(s) 112
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 1 cut(s) 103
Vha464I CTTAAG 1 cut(s) 295
VpaK11BI GGWCC 4 cut(s) 90, 106, 245, 254
XapI RAATTY 1 cut(s) 138
XmnI GAANNNNTTC 1 cut(s) 618
XspI CTAG 2 cut(s) 513, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.