Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0028308

Physical Location & Seq

Genomic Coordinates Reverse (-)

27350256 .. 27351509

Gene Structure 1254 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1130000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGGTTTCAGCTCTAGCTCAGGTGATCGGAAAAAATAGTGACCAAATTAATAACCCACTTGGTCAAGTGCAAGGAATAAATCCATTAACCACCTCACAGTCCAGCCCTACGGAGACTCAATCTCAACCGGTGCTACTTCAAGATCAAGTCGACCTTGACTGGACGACCCATGATAAGATTCTAAATGTTACTAGATCGAGAACGACTCTAAGCTCAGCCCAAAATATTATTTTGGGCCCAAACAGGTGCATATTAGGATTTCGTGACCCAATATTAATTTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

95

Amino Acids

10.25

Weight (kDa)

5.52

Isoelectric Point (pI)

53.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028308)

Species	Orthologous Gene IDs
malus_domestica	MD06G1130000.v1.1
pyrus_communis	pycom06g12210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	150
AgeI	ACCGGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	140
AluBI	AGCT	3 cut(s)	11, 17, 213
AluI	AGCT	3 cut(s)	11, 17, 213
Alw26I	GTCTC	1 cut(s)	107
AoxI	GGCC	1 cut(s)	235
ApaI	GGGCCC	1 cut(s)	239
AseI	ATTAAT	2 cut(s)	48, 275
AsiGI	ACCGGT	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	235, 236
AsuHPI	GGTGA	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	239
BanII	GRGCYC	1 cut(s)	239
BcoDI	GTCTC	1 cut(s)	107
BfaI	CTAG	2 cut(s)	14, 192
BlpI	GCTNAGC	1 cut(s)	214
BmgT120I	GGNCC	2 cut(s)	235, 236
BmiI	GGNNCC	1 cut(s)	237
BplI	GAGNNNNNCTC	2 cut(s)	190, 222
Bpu10I	CCTNAGC	1 cut(s)	18
Bpu1102I	GCTNAGC	1 cut(s)	214
BsaWI	WCCGGW	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	127
Bse1I	ACTGG	1 cut(s)	164
BseMII	CTCAG	2 cut(s)	32, 228
BseNI	ACTGG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	239
BshFI	GGCC	1 cut(s)	237
BshTI	ACCGGT	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	128
BsmAI	GTCTC	1 cut(s)	107
BsnI	GGCC	1 cut(s)	237
Bsp120I	GGGCCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	3 cut(s)	24, 142, 194
Bsp1720I	GCTNAGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	237
BspCNI	CTCAG	2 cut(s)	31, 227
BspLI	GGNNCC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	164
BssAI	RCCGGY	1 cut(s)	127
BssMI	GATC	3 cut(s)	24, 142, 194
Bst4CI	ACNGT	1 cut(s)	99
BstDEI	CTNAG	3 cut(s)	18, 209, 214
BstKTI	GATC	3 cut(s)	27, 145, 197
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	3 cut(s)	24, 142, 194
BstSLI	GKGCMC	1 cut(s)	239
BsuRI	GGCC	1 cut(s)	237
Cfr10I	RCCGGY	1 cut(s)	127
Cfr13I	GGNCC	2 cut(s)	235, 236
CspAI	ACCGGT	1 cut(s)	127
CviAII	CATG	1 cut(s)	170
CviJI	RGCY	6 cut(s)	11, 17, 105, 213, 218, 237
CviKI_1	RGCY	6 cut(s)	11, 17, 105, 213, 218, 237
DdeI	CTNAG	3 cut(s)	18, 209, 214
DpnI	GATC	3 cut(s)	26, 144, 196
DpnII	GATC	3 cut(s)	24, 142, 194
Eco24I	GRGCYC	1 cut(s)	239
EcoT38I	GRGCYC	1 cut(s)	239
FaeI	CATG	1 cut(s)	173
FaiI	YATR	2 cut(s)	171, 251
FalI	AAGNNNNNCTT	2 cut(s)	138, 170
FatI	CATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	150
FriOI	GRGCYC	1 cut(s)	239
FspBI	CTAG	2 cut(s)	14, 192
HaeIII	GGCC	1 cut(s)	237
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	1 cut(s)	173
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HinfI	GANTC	3 cut(s)	115, 178, 205
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	3 cut(s)	140, 198, 263
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	70, 249
HpyF3I	CTNAG	3 cut(s)	18, 209, 214
Hsp92II	CATG	1 cut(s)	173
Kzo9I	GATC	3 cut(s)	24, 142, 194
LpnPI	CCDG	5 cut(s)	5, 115, 141, 145, 229
MaeI	CTAG	2 cut(s)	14, 192
MaeIII	GTNAC	3 cut(s)	38, 187, 263
MalI	GATC	3 cut(s)	26, 144, 196
MboI	GATC	3 cut(s)	24, 142, 194
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	2 cut(s)	45, 276
MlyI	GAGTC	2 cut(s)	109, 199
MnlI	CCTC	1 cut(s)	103
MseI	TTAA	3 cut(s)	48, 86, 275
MspI	CCGG	1 cut(s)	128
NdeII	GATC	3 cut(s)	24, 142, 194
NlaIII	CATG	1 cut(s)	173
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	2 cut(s)	38, 263
PfeI	GAWTC	1 cut(s)	178
PinAI	ACCGGT	1 cut(s)	127
PleI	GAGTC	2 cut(s)	109, 199
PpsI	GAGTC	2 cut(s)	109, 199
PshBI	ATTAAT	2 cut(s)	48, 275
PspN4I	GGNNCC	1 cut(s)	237
PspOMI	GGGCCC	1 cut(s)	235
PspPI	GGNCC	2 cut(s)	235, 236
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	3 cut(s)	48, 86, 275
Sau3AI	GATC	3 cut(s)	24, 142, 194
Sau96I	GGNCC	2 cut(s)	235, 236
SchI	GAGTC	2 cut(s)	109, 199
SduI	GDGCHC	1 cut(s)	239
SetI	ASST	7 cut(s)	13, 19, 24, 95, 156, 215, 248
Sse9I	AATT	2 cut(s)	45, 276
SspI	AATATT	2 cut(s)	226, 273
SspMI	CTAG	2 cut(s)	14, 192
TaaI	ACNGT	1 cut(s)	99
TaqI	TCGA	2 cut(s)	150, 197
TasI	AATT	2 cut(s)	45, 276
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	3 cut(s)	48, 86, 275
Tru9I	TTAA	3 cut(s)	48, 86, 275
TseFI	GTSAC	2 cut(s)	38, 263
Tsp45I	GTSAC	2 cut(s)	38, 263
TspGWI	ACGGA	1 cut(s)	125
VspI	ATTAAT	2 cut(s)	48, 275
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	2 cut(s)	14, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.