Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0028308

Physical Location & Seq

Genomic Coordinates Reverse (-)

17348091 .. 17349021

Gene Structure 931 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g12210.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 207 bp

ATGGTTTCAGCTCTAGCTCAGGTGATCGGAAAAAATAGTGTCCAAATTAATAACCCACTTGATCAAGTGCAAGGATTAAATCCATTAATCACCTCACAGTCCAGCCCTACAGAGACTCAATCTCAACCGGTACTACTTCAAGATCAAGTTGAGGAGACAACATTACAGAGGAGTGAGGCGGAGACCAGGGGGAAAGTGGGCTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

69

Amino Acids

7.31

Weight (kDa)

4.49

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028308)

Species	Orthologous Gene IDs
malus_domestica	MD06G1130000.v1.1
pyrus_communis	pycom06g12210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	179
AfaI	GTAC	1 cut(s)	132
AgeI	ACCGGT	1 cut(s)	127
AgsI	TTSAA	1 cut(s)	140
AjnI	CCWGG	1 cut(s)	185
AluBI	AGCT	2 cut(s)	11, 17
AluI	AGCT	2 cut(s)	11, 17
Alw26I	GTCTC	3 cut(s)	107, 149, 176
ApeKI	GCWGC	1 cut(s)	201
AseI	ATTAAT	2 cut(s)	48, 86
AsiGI	ACCGGT	1 cut(s)	127
AsuHPI	GGTGA	2 cut(s)	34, 82
BbvI	GCAGC	1 cut(s)	188
BciT130I	CCWGG	1 cut(s)	187
BclI	TGATCA	1 cut(s)	61
BcoDI	GTCTC	3 cut(s)	107, 149, 176
BfaI	CTAG	1 cut(s)	14
BfmI	CTRYAG	1 cut(s)	108
BisI	GCNGC	1 cut(s)	202
BlsI	GCNGC	1 cut(s)	203
Bme1390I	CCNGG	1 cut(s)	187
BmrFI	CCNGG	1 cut(s)	187
Bpu10I	CCTNAGC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	176
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	127
Bse118I	RCCGGY	1 cut(s)	127
BseBI	CCWGG	1 cut(s)	187
BseDI	CCNNGG	1 cut(s)	186
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	167, 184
BseXI	GCAGC	1 cut(s)	188
BshTI	ACCGGT	1 cut(s)	127
BsiSI	CCGG	1 cut(s)	128
BsmAI	GTCTC	3 cut(s)	107, 149, 176
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	24, 61, 142
BspACI	CCGC	1 cut(s)	179
BspCNI	CTCAG	1 cut(s)	31
BspTNI	GGTCTC	1 cut(s)	176
BsrFI	RCCGGY	1 cut(s)	127
BssAI	RCCGGY	1 cut(s)	127
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	3 cut(s)	24, 61, 142
Bst2UI	CCWGG	1 cut(s)	187
Bst4CI	ACNGT	1 cut(s)	99
BstDEI	CTNAG	1 cut(s)	18
BstKTI	GATC	3 cut(s)	27, 64, 145
BstMAI	GTCTC	3 cut(s)	107, 149, 176
BstMBI	GATC	3 cut(s)	24, 61, 142
BstNI	CCWGG	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	185
BstSFI	CTRYAG	1 cut(s)	108
BstV1I	GCAGC	1 cut(s)	188
Cfr10I	RCCGGY	1 cut(s)	127
Csp6I	GTAC	1 cut(s)	131
CspAI	ACCGGT	1 cut(s)	127
CviJI	RGCY	4 cut(s)	11, 17, 105, 201
CviKI_1	RGCY	4 cut(s)	11, 17, 105, 201
CviQI	GTAC	1 cut(s)	131
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	3 cut(s)	26, 63, 144
DpnII	GATC	3 cut(s)	24, 61, 142
EciI	GGCGGA	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	185
FbaI	TGATCA	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	202
Fsp4HI	GCNGC	1 cut(s)	202
FspBI	CTAG	1 cut(s)	14
GluI	GCNGC	1 cut(s)	202
HapII	CCGG	1 cut(s)	128
HinfI	GANTC	1 cut(s)	115
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	2 cut(s)	34, 82
Hpy188I	TCNGA	1 cut(s)	29
Hpy188III	TCNNGA	1 cut(s)	140
HpyCH4III	ACNGT	1 cut(s)	99
HpyCH4V	TGCA	1 cut(s)	70
HpyF3I	CTNAG	1 cut(s)	18
Ksp22I	TGATCA	1 cut(s)	61
Kzo9I	GATC	3 cut(s)	24, 61, 142
LpnPI	CCDG	5 cut(s)	5, 115, 141, 172, 199
Lsp1109I	GCAGC	1 cut(s)	188
MaeI	CTAG	1 cut(s)	14
MalI	GATC	3 cut(s)	26, 63, 144
MboI	GATC	3 cut(s)	24, 61, 142
MluCI	AATT	1 cut(s)	45
MlyI	GAGTC	1 cut(s)	109
MnlI	CCTC	4 cut(s)	103, 145, 162, 169
MseI	TTAA	3 cut(s)	48, 77, 86
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	187
NdeII	GATC	3 cut(s)	24, 61, 142
PinAI	ACCGGT	1 cut(s)	127
PkrI	GCNGC	1 cut(s)	203
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PshBI	ATTAAT	2 cut(s)	48, 86
Psp6I	CCWGG	1 cut(s)	185
PspGI	CCWGG	1 cut(s)	185
RsaI	GTAC	1 cut(s)	132
RsaNI	GTAC	1 cut(s)	131
SaqAI	TTAA	3 cut(s)	48, 77, 86
SatI	GCNGC	1 cut(s)	202
Sau3AI	GATC	3 cut(s)	24, 61, 142
SchI	GAGTC	1 cut(s)	109
ScrFI	CCNGG	1 cut(s)	187
SetI	ASST	4 cut(s)	13, 19, 24, 95
SfcI	CTRYAG	1 cut(s)	108
Sse9I	AATT	1 cut(s)	45
SsiI	CCGC	1 cut(s)	179
SspMI	CTAG	1 cut(s)	14
StyD4I	CCNGG	1 cut(s)	185
TaaI	ACNGT	1 cut(s)	99
TasI	AATT	1 cut(s)	45
Tru1I	TTAA	3 cut(s)	48, 77, 86
Tru9I	TTAA	3 cut(s)	48, 77, 86
TseI	GCWGC	1 cut(s)	201
VspI	ATTAAT	2 cut(s)	48, 86
XcmI	CCANNNNNNNNNTGG	1 cut(s)	193
XspI	CTAG	1 cut(s)	14

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.