Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0028293

Physical Location & Seq

Genomic Coordinates Forward (+)

32132200 .. 32132580

Gene Structure 381 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1182700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGATGAAGAAGCTTGTCCCTCGTTTGACGGTTAAGAGGGCTTCAGAACCAAAATTCGTGCTTGTTCTAGGCATGCATATGAGGGTTGGTGCTATATGTTTGGTCCTTCCTAACCCCCATTGCACGTCGAAAGCGAGTTCAAGTGGCAGCAACGAAGTTTCTTGGTCCCCGTTGAACTCTTCGGTTGACCCTGTTGCCTCGTTTACGATGGGCTCGTGCGAGCACAATGTGGGATACTACGACGCGTTCAAGCTTCAAAAGCACAGGAAAGATTTCGACGCGAATGTGACAAGGCTTGTGCTTGCAGGCATATGGGATGAGATAACTGATATGCTGAAAAAATATGATCTTCCTGATGAAATTGAGGCTATATCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0001666 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007584 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009627 GO:0009628 GO:0009653 GO:0009814 GO:0009987 GO:0009991 GO:0010035 GO:0010310 GO:0010618 GO:0010941 GO:0010942 GO:0012501 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031667 GO:0032502 GO:0033554 GO:0034050 GO:0036293 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070482 GO:0098542 GO:1901700 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

127

Amino Acids

14.03

Weight (kDa)

6.89

Isoelectric Point (pI)

45.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EDS1_EP	PF18117	73 - 123	5e-11	Enhanced disease susceptibility 1 protein EP domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0028293)

Species	Orthologous Gene IDs
malus_domestica	MD06G1182700.v1.1
pyrus_communis	pycom06g16170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	245, 281
AcsI	RAATTY	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	27
AdeI	CACNNNGTG	1 cut(s)	229
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	4 cut(s)	141, 175, 250, 257
AjiI	CACGTC	1 cut(s)	126
AluBI	AGCT	2 cut(s)	13, 253
AluI	AGCT	2 cut(s)	13, 253
Alw21I	GWGCWC	1 cut(s)	225
ApeKI	GCWGC	1 cut(s)	147
ApoI	RAATTY	1 cut(s)	53
Asp700I	GAANNNNTTC	1 cut(s)	272
AspS9I	GGNCC	2 cut(s)	103, 165
AvaII	GGWCC	2 cut(s)	103, 165
BanII	GRGCYC	1 cut(s)	215
BauI	CACGAG	1 cut(s)	214
Bbv12I	GWGCWC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	159
BccI	CCATC	1 cut(s)	202
BciVI	GTATCC	1 cut(s)	227
BfaI	CTAG	1 cut(s)	68
BfuI	GTATCC	1 cut(s)	227
BisI	GCNGC	1 cut(s)	148
BlsI	GCNGC	1 cut(s)	149
Bme18I	GGWCC	2 cut(s)	103, 165
BmgBI	CACGTC	1 cut(s)	126
BmgT120I	GGNCC	2 cut(s)	103, 165
BmiI	GGNNCC	1 cut(s)	167
Bse3DI	GCAATG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	322
BseMI	GCAATG	1 cut(s)	118
BseXI	GCAGC	1 cut(s)	159
Bsh1236I	CGCG	2 cut(s)	245, 281
BsiHKAI	GWGCWC	1 cut(s)	225
BslFI	GGGAC	2 cut(s)	2, 151
BsmFI	GGGAC	2 cut(s)	2, 151
Bsp1286I	GDGCHC	2 cut(s)	215, 225
Bsp143I	GATC	1 cut(s)	346
BspFNI	CGCG	2 cut(s)	245, 281
BspLI	GGNNCC	1 cut(s)	167
BsrDI	GCAATG	1 cut(s)	118
BssMI	GATC	1 cut(s)	346
BssSI	CACGAG	1 cut(s)	214
Bst2BI	CACGAG	1 cut(s)	214
Bst4CI	ACNGT	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	184
BstC8I	GCNNGC	4 cut(s)	74, 221, 303, 307
BstF5I	GGATG	1 cut(s)	322
BstFNI	CGCG	2 cut(s)	245, 281
BstKTI	GATC	1 cut(s)	349
BstMBI	GATC	1 cut(s)	346
BstMWI	GCNNNNNNNGC	1 cut(s)	259
BstNSI	RCATGY	1 cut(s)	76
BstUI	CGCG	2 cut(s)	245, 281
BstV1I	GCAGC	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	227
BtrI	CACGTC	1 cut(s)	126
BtsCI	GGATG	1 cut(s)	322
Cac8I	GCNNGC	4 cut(s)	74, 221, 303, 307
Cfr13I	GGNCC	2 cut(s)	103, 165
CseI	GACGC	2 cut(s)	251, 287
CviAII	CATG	1 cut(s)	73
CviJI	RGCY	6 cut(s)	13, 41, 213, 253, 295, 368
CviKI_1	RGCY	6 cut(s)	13, 41, 213, 253, 295, 368
DpnI	GATC	1 cut(s)	348
DpnII	GATC	1 cut(s)	346
DraIII	CACNNNGTG	1 cut(s)	229
Eam1104I	CTCTTC	1 cut(s)	184
EarI	CTCTTC	1 cut(s)	184
Eco24I	GRGCYC	1 cut(s)	215
Eco47I	GGWCC	2 cut(s)	103, 165
Eco57I	CTGAAG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	215
FaeI	CATG	1 cut(s)	76
FaqI	GGGAC	2 cut(s)	2, 151
FatI	CATG	1 cut(s)	72
FauNDI	CATATG	2 cut(s)	78, 311
Fnu4HI	GCNGC	1 cut(s)	148
FokI	GGATG	1 cut(s)	329
FriOI	GRGCYC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	148
FspBI	CTAG	1 cut(s)	68
GluI	GCNGC	1 cut(s)	148
HgaI	GACGC	2 cut(s)	251, 287
Hin1II	CATG	1 cut(s)	76
HincII	GTYRAC	1 cut(s)	187
HindII	GTYRAC	1 cut(s)	187
HindIII	AAGCTT	2 cut(s)	11, 251
Hpy166II	GTNNAC	2 cut(s)	187, 204
Hpy188I	TCNGA	2 cut(s)	46, 376
Hpy188III	TCNNGA	1 cut(s)	353
Hpy8I	GTNNAC	2 cut(s)	187, 204
Hpy99I	CGWCG	3 cut(s)	130, 245, 281
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	31
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	76, 123, 305
HpyF10VI	GCNNNNNNNGC	1 cut(s)	259
HpySE526I	ACGT	1 cut(s)	125
Hsp92II	CATG	1 cut(s)	76
Kzo9I	GATC	1 cut(s)	346
LpnPI	CCDG	4 cut(s)	204, 250, 291, 366
Lsp1109I	GCAGC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	68
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	1 cut(s)	286
MalI	GATC	1 cut(s)	348
MboI	GATC	1 cut(s)	346
MboII	GAAGA	3 cut(s)	19, 171, 341
MhlI	GDGCHC	2 cut(s)	215, 225
MluCI	AATT	2 cut(s)	53, 360
MluI	ACGCGT	1 cut(s)	243
MnlI	CCTC	5 cut(s)	30, 30, 75, 208, 358
Mph1103I	ATGCAT	1 cut(s)	78
MroXI	GAANNNNTTC	1 cut(s)	272
MseI	TTAA	1 cut(s)	33
MslI	CAYNNNNRTG	1 cut(s)	77
MvnI	CGCG	2 cut(s)	245, 281
MwoI	GCNNNNNNNGC	1 cut(s)	259
NdeI	CATATG	2 cut(s)	78, 311
NdeII	GATC	1 cut(s)	346
NlaIII	CATG	1 cut(s)	76
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	286
NsiI	ATGCAT	1 cut(s)	78
NspI	RCATGY	1 cut(s)	76
PaeI	GCATGC	1 cut(s)	76
PcsI	WCGNNNNNNNCGW	2 cut(s)	131, 212
PdmI	GAANNNNTTC	1 cut(s)	272
PkrI	GCNGC	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	2 cut(s)	103, 165
RseI	CAYNNNNRTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	33
SatI	GCNGC	1 cut(s)	148
Sau3AI	GATC	1 cut(s)	346
Sau96I	GGNCC	2 cut(s)	103, 165
SduI	GDGCHC	2 cut(s)	215, 225
SetI	ASST	3 cut(s)	15, 128, 255
SinI	GGWCC	2 cut(s)	103, 165
SmiMI	CAYNNNNRTG	1 cut(s)	77
SphI	GCATGC	1 cut(s)	76
Sse9I	AATT	2 cut(s)	53, 360
SspMI	CTAG	1 cut(s)	68
TaaI	ACNGT	1 cut(s)	31
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	128, 276
TasI	AATT	2 cut(s)	53, 360
Tru1I	TTAA	1 cut(s)	33
Tru9I	TTAA	1 cut(s)	33
TseFI	GTSAC	1 cut(s)	286
TseI	GCWGC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	286
TspDTI	ATGAA	2 cut(s)	20, 372
VpaK11BI	GGWCC	2 cut(s)	103, 165
XapI	RAATTY	1 cut(s)	53
XceI	RCATGY	1 cut(s)	76
XmnI	GAANNNNTTC	1 cut(s)	272
XspI	CTAG	1 cut(s)	68
Zsp2I	ATGCAT	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.