Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0028293

Physical Location & Seq

Genomic Coordinates Forward (+)

20555116 .. 20555907

Gene Structure 792 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g16170.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAAGAAGCTTGTTCCTCGTTTGACGGTTAAGAGGGCTTCAGAACCAAAGTTCGTGCTTATTCTAGACATTTCAAGTGGCAGCAACGAAGTTTCTTGGTCCCCGTTGAACTCTTCGGTTGACCCTGTTGCCTCGTTTACGATGGGCTCGTGCGAGCACAATGTGGGATACTACAACGCATTCAAGCTTGAAAAGCACAGGAAAGATTTCGACGCGAATGTGACAAGGCTTGTGCTTGCAGGCATATGGGATGAGATAACTGATATGCTGAAAAAATATGATCTTCCTGATGAAATTGAGGCAATATCAGATTGGGTAGAGCACGCAAGGGGAGAAGACACCGGAGTCTATATGGAGAGAGGCAGGCAAAAGCGTTACAAATACACACAAAGATGGCTCGAGCACGAAAAAAAACTGCCAGTACCCCGGGGGAATCCTGACCACCAGGCAGTGAACAAGGAGAAAAAGAGAGCGTTGAACCTTCAAGGACAAGTAGGAAAATGGATTGAGGACAGGGTTCTCGGCAAGGATGTGTTGAAGTCGTCCACCTTCAAGGCATGGTGGAGCGAACTCCCCGTTGACCTCAAAACTGAAACTATTTCGGGACTTATGAATGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0000304 GO:0001666 GO:0002376 GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007584 GO:0008150 GO:0008219 GO:0009605 GO:0009607 GO:0009626 GO:0009627 GO:0009628 GO:0009653 GO:0009814 GO:0009987 GO:0009991 GO:0010035 GO:0010310 GO:0010618 GO:0010941 GO:0010942 GO:0012501 GO:0016298 GO:0016787 GO:0016788 GO:0019222 GO:0031323 GO:0031667 GO:0032502 GO:0033554 GO:0034050 GO:0036293 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045087 GO:0046983 GO:0048518 GO:0048522 GO:0048646 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051193 GO:0051704 GO:0051707 GO:0051716 GO:0065007 GO:0070482 GO:0098542 GO:1901700 GO:2000377

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Lipase_3

Protein Analysis

207

Amino Acids

23.67

Weight (kDa)

8.81

Isoelectric Point (pI)

36.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028293)

Species	Orthologous Gene IDs
malus_domestica	MD06G1182700.v1.1
pyrus_communis	pycom06g16170

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	344
AccII	CGCG	1 cut(s)	215
AcuI	CTGAAG	1 cut(s)	24
AdeI	CACNNNGTG	1 cut(s)	163
AfaI	GTAC	1 cut(s)	423
AgsI	TTSAA	8 cut(s)	75, 109, 184, 191, 478, 485, 538, 553
AjnI	CCWGG	1 cut(s)	444
AluBI	AGCT	2 cut(s)	10, 187
AluI	AGCT	2 cut(s)	10, 187
Alw21I	GWGCWC	3 cut(s)	159, 324, 405
Ama87I	CYCGRG	2 cut(s)	398, 426
ApeKI	GCWGC	1 cut(s)	81
Asp700I	GAANNNNTTC	1 cut(s)	206
AspS9I	GGNCC	1 cut(s)	99
AsuC2I	CCSGG	2 cut(s)	427, 428
AvaI	CYCGRG	2 cut(s)	398, 426
AvaII	GGWCC	1 cut(s)	99
BanII	GRGCYC	1 cut(s)	149
BauI	CACGAG	1 cut(s)	148
BbsI	GAAGAC	1 cut(s)	342
Bbv12I	GWGCWC	3 cut(s)	159, 324, 405
BbvI	GCAGC	1 cut(s)	93
BccI	CCATC	2 cut(s)	136, 387
BciT130I	CCWGG	1 cut(s)	446
BciVI	GTATCC	1 cut(s)	161
BcnI	CCSGG	2 cut(s)	427, 428
BfaI	CTAG	1 cut(s)	65
BfuI	GTATCC	1 cut(s)	161
BisI	GCNGC	1 cut(s)	82
BlsI	GCNGC	1 cut(s)	83
Bme1390I	CCNGG	3 cut(s)	427, 428, 446
Bme18I	GGWCC	1 cut(s)	99
BmeT110I	CYCGRG	2 cut(s)	398, 426
BmgT120I	GGNCC	1 cut(s)	99
BmiI	GGNNCC	1 cut(s)	101
BmrFI	CCNGG	3 cut(s)	427, 428, 446
BpiI	GAAGAC	1 cut(s)	342
BpuMI	CCSGG	2 cut(s)	427, 428
BsaJI	CCNNGG	3 cut(s)	425, 426, 427
BsaWI	WCCGGW	1 cut(s)	341
Bse1I	ACTGG	1 cut(s)	419
BseBI	CCWGG	1 cut(s)	446
BseDI	CCNNGG	3 cut(s)	425, 426, 427
BseGI	GGATG	2 cut(s)	256, 535
BseNI	ACTGG	1 cut(s)	419
BseXI	GCAGC	1 cut(s)	93
Bsh1236I	CGCG	1 cut(s)	215
BsiHKAI	GWGCWC	3 cut(s)	159, 324, 405
BsiHKCI	CYCGRG	2 cut(s)	398, 426
BsiSI	CCGG	2 cut(s)	342, 427
BslFI	GGGAC	1 cut(s)	85
BsmFI	GGGAC	1 cut(s)	85
BsmI	GAATGC	1 cut(s)	179
BsoBI	CYCGRG	2 cut(s)	398, 426
Bsp1286I	GDGCHC	4 cut(s)	149, 159, 324, 405
Bsp143I	GATC	1 cut(s)	280
BspFNI	CGCG	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	101
BsrI	ACTGG	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	425, 426, 427
BssMI	GATC	1 cut(s)	280
BssSI	CACGAG	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	148
Bst2UI	CCWGG	1 cut(s)	446
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	1 cut(s)	118
BstC8I	GCNNGC	5 cut(s)	155, 237, 241, 324, 365
BstF5I	GGATG	2 cut(s)	256, 535
BstFNI	CGCG	1 cut(s)	215
BstKTI	GATC	1 cut(s)	283
BstMBI	GATC	1 cut(s)	280
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstNI	CCWGG	1 cut(s)	446
BstSCI	CCNGG	3 cut(s)	425, 426, 444
BstUI	CGCG	1 cut(s)	215
BstV1I	GCAGC	1 cut(s)	93
BstV2I	GAAGAC	1 cut(s)	342
BsuI	GTATCC	1 cut(s)	161
BtsCI	GGATG	2 cut(s)	256, 535
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	5 cut(s)	155, 237, 241, 324, 365
Cfr13I	GGNCC	1 cut(s)	99
Cfr9I	CCCGGG	1 cut(s)	426
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	422
CviAII	CATG	1 cut(s)	558
CviJI	RGCY	6 cut(s)	10, 38, 147, 187, 229, 397
CviKI_1	RGCY	6 cut(s)	10, 38, 147, 187, 229, 397
CviQI	GTAC	1 cut(s)	422
DpnI	GATC	1 cut(s)	282
DpnII	GATC	1 cut(s)	280
DraIII	CACNNNGTG	1 cut(s)	163
DrdI	GACNNNNNNGTC	1 cut(s)	344
DseDI	GACNNNNNNGTC	1 cut(s)	344
Eam1104I	CTCTTC	1 cut(s)	118
EarI	CTCTTC	1 cut(s)	118
Eco24I	GRGCYC	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	99
Eco57I	CTGAAG	1 cut(s)	24
Eco88I	CYCGRG	2 cut(s)	398, 426
EcoRII	CCWGG	1 cut(s)	444
EcoT38I	GRGCYC	1 cut(s)	149
FaeI	CATG	1 cut(s)	561
FaiI	YATR	8 cut(s)	245, 247, 266, 279, 351, 353, 559, 611
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	1 cut(s)	557
FauNDI	CATATG	1 cut(s)	245
Fnu4HI	GCNGC	1 cut(s)	82
FokI	GGATG	2 cut(s)	263, 542
FriOI	GRGCYC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	82
FspBI	CTAG	1 cut(s)	65
GluI	GCNGC	1 cut(s)	82
HapII	CCGG	2 cut(s)	342, 427
HgaI	GACGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	561
HincII	GTYRAC	2 cut(s)	121, 580
HindII	GTYRAC	2 cut(s)	121, 580
HindIII	AAGCTT	2 cut(s)	8, 185
HinfI	GANTC	2 cut(s)	345, 433
HpaII	CCGG	2 cut(s)	342, 427
Hpy166II	GTNNAC	5 cut(s)	121, 138, 454, 546, 580
Hpy188I	TCNGA	2 cut(s)	43, 310
Hpy188III	TCNNGA	4 cut(s)	65, 287, 437, 603
Hpy8I	GTNNAC	5 cut(s)	121, 138, 454, 546, 580
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	2 cut(s)	491, 559
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	1 cut(s)	239
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
Hsp92II	CATG	1 cut(s)	561
Kzo9I	GATC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	564
Lsp1109I	GCAGC	1 cut(s)	93
MaeI	CTAG	1 cut(s)	65
MaeIII	GTNAC	2 cut(s)	220, 374
MalI	GATC	1 cut(s)	282
MboI	GATC	1 cut(s)	280
MboII	GAAGA	4 cut(s)	16, 105, 275, 347
MhlI	GDGCHC	4 cut(s)	149, 159, 324, 405
MluCI	AATT	1 cut(s)	294
MlyI	GAGTC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	27, 27, 142, 292, 353, 502, 593
MroXI	GAANNNNTTC	1 cut(s)	206
MseI	TTAA	1 cut(s)	30
MslI	CAYNNNNRTG	1 cut(s)	391
MspI	CCGG	2 cut(s)	342, 427
MspR9I	CCNGG	3 cut(s)	427, 428, 446
Mva1269I	GAATGC	1 cut(s)	179
MvaI	CCWGG	1 cut(s)	446
MvnI	CGCG	1 cut(s)	215
MwoI	GCNNNNNNNGC	1 cut(s)	193
NciI	CCSGG	2 cut(s)	427, 428
NdeI	CATATG	1 cut(s)	245
NdeII	GATC	1 cut(s)	280
NlaIII	CATG	1 cut(s)	561
NlaIV	GGNNCC	1 cut(s)	101
NmeAIII	GCCGAG	1 cut(s)	501
NmuCI	GTSAC	1 cut(s)	220
PaeR7I	CTCGAG	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	1 cut(s)	146
PctI	GAATGC	1 cut(s)	179
PdmI	GAANNNNTTC	1 cut(s)	206
PfeI	GAWTC	1 cut(s)	433
PkrI	GCNGC	1 cut(s)	83
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
Psp6I	CCWGG	1 cut(s)	444
PspGI	CCWGG	1 cut(s)	444
PspN4I	GGNNCC	1 cut(s)	101
PspPI	GGNCC	1 cut(s)	99
PspXI	VCTCGAGB	1 cut(s)	398
RsaI	GTAC	1 cut(s)	423
RsaNI	GTAC	1 cut(s)	422
RseI	CAYNNNNRTG	1 cut(s)	391
SaqAI	TTAA	1 cut(s)	30
SatI	GCNGC	1 cut(s)	82
Sau3AI	GATC	1 cut(s)	280
Sau96I	GGNCC	1 cut(s)	99
SchI	GAGTC	1 cut(s)	354
ScrFI	CCNGG	3 cut(s)	427, 428, 446
SduI	GDGCHC	4 cut(s)	149, 159, 324, 405
SetI	ASST	5 cut(s)	12, 189, 483, 551, 585
Sfr274I	CTCGAG	1 cut(s)	398
SinI	GGWCC	1 cut(s)	99
SlaI	CTCGAG	1 cut(s)	398
SmaI	CCCGGG	1 cut(s)	428
SmiMI	CAYNNNNRTG	1 cut(s)	391
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	1 cut(s)	294
SspMI	CTAG	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	425, 426, 444
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	2 cut(s)	210, 399
TasI	AATT	1 cut(s)	294
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	1 cut(s)	30
Tru9I	TTAA	1 cut(s)	30
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	1 cut(s)	81
Tsp45I	GTSAC	1 cut(s)	220
TspDTI	ATGAA	2 cut(s)	17, 306
TspMI	CCCGGG	1 cut(s)	426
TspRI	CASTG	1 cut(s)	456
VpaK11BI	GGWCC	1 cut(s)	99
XbaI	TCTAGA	1 cut(s)	64
XhoI	CTCGAG	1 cut(s)	398
XmaI	CCCGGG	1 cut(s)	426
XmnI	GAANNNNTTC	1 cut(s)	206
XspI	CTAG	1 cut(s)	65

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.