Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0024483

Physical Location & Seq

Genomic Coordinates Reverse (-)

492749 .. 497683

Gene Structure 4935 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1004600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGACGTCTCAGCTGCATAAACCCATTTACGCTCCATCCTTCTCTCTCTTTCCAAAATCGTCCATTAACCCTAATCATCTGATTAAGCATGGTAACCCCTCCCTGATCAGCATCGTTCCGCGCCACCATGTCCATCAAAATCGTAACAAGAAAAACTCCTCCTCGGTGATCCGTGCCGCTTCTGGTGAGCTCAAATCATCACCTACATCAGTGTCCACGGTTAATTCAGCGGAGAATCAGGCGTTTACAGTAAAGGCTTTGGTGACGGTGATGTCAACAGTTGAAGGGTTCCTCTCCGGCATAAGCTTGACTCGCCCCCTCGATGACATTACCGACTTGCTCGGAAAAACCTTGCTTTTGGAGCTTGTTAGCGCCGAGCTTGACCCCAAGACGGGGTTGGAGAAGGAAACAGTGAAGGGCTATGCGCACAATGCGAGCCACAAGGACAACGAGGTGGTGTATGAGGCTACTTTCACCATCCCAGCAGGGTTTGGAGCCGTTGGAGCTGTTCAGGTAGAGAATGAACACCACAAGGAGATCTTCATCAAGAACATCGACCTCGATGGCTTCCCGAACGGCACTGTTAATATTCCCTGCATTTCTTGGGTTCATTCCAAGTTTGACAACTCTCAGAAGAGAATTTTTTTCACCAACAAGGTCCTCTATTTTAGATCCTTATATTTTTCCTTGCTTTCTCATTATTATCATACAAACACACACACACACATATATACATGGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

248

Amino Acids

27.54

Weight (kDa)

8.53

Isoelectric Point (pI)

32.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	145 - 216	2.5e-09	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0024483)

Species	Orthologous Gene IDs
malus_domestica	MD07G1004600.v1.1
pyrus_communis	pycom02g26580
rosa_samantha	Rh1CG009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	271
AatII	GACGTC	1 cut(s)	8
Acc16I	TGCGCA	1 cut(s)	426
AccII	CGCG	1 cut(s)	121
AciI	CCGC	3 cut(s)	119, 177, 230
AclWI	GGATC	2 cut(s)	163, 666
AcsI	RAATTY	1 cut(s)	639
AcyI	GRCGYC	1 cut(s)	5
AfiI	CCNNNNNNNGG	3 cut(s)	391, 392, 393
AgsI	TTSAA	1 cut(s)	284
AluBI	AGCT	6 cut(s)	13, 190, 306, 364, 379, 506
AluI	AGCT	6 cut(s)	13, 190, 306, 364, 379, 506
Alw21I	GWGCWC	1 cut(s)	192
Alw26I	GTCTC	1 cut(s)	12
AlwI	GGATC	2 cut(s)	163, 666
ApeKI	GCWGC	1 cut(s)	13
ApoI	RAATTY	1 cut(s)	639
AspLEI	GCGC	3 cut(s)	123, 374, 427
AspS9I	GGNCC	1 cut(s)	658
AsuHPI	GGTGA	7 cut(s)	178, 192, 197, 274, 280, 466, 640
AvaII	GGWCC	1 cut(s)	658
BanII	GRGCYC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	192
BccI	CCATC	4 cut(s)	43, 141, 485, 557
BceAI	ACGGC	2 cut(s)	482, 592
BclI	TGATCA	1 cut(s)	105
BcoDI	GTCTC	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	375
BglII	AGATCT	1 cut(s)	537
BisI	GCNGC	2 cut(s)	14, 177
BlsI	GCNGC	2 cut(s)	15, 178
Bme18I	GGWCC	1 cut(s)	658
BmgT120I	GGNCC	1 cut(s)	658
BmiI	GGNNCC	2 cut(s)	290, 496
BmsI	GCATC	1 cut(s)	120
BsaBI	GATNNNNATC	2 cut(s)	110, 542
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	162, 216
Bsc4I	CCNNNNNNNGG	3 cut(s)	391, 392, 393
Bse8I	GATNNNNATC	2 cut(s)	110, 542
BseDI	CCNNGG	2 cut(s)	162, 216
BseGI	GGATG	2 cut(s)	35, 477
BseJI	GATNNNNATC	2 cut(s)	110, 542
BseLI	CCNNNNNNNGG	3 cut(s)	391, 392, 393
BseMII	CTCAG	2 cut(s)	23, 644
BseRI	GAGGAG	2 cut(s)	148, 151
BseYI	CCCAGC	1 cut(s)	481
Bsh1236I	CGCG	1 cut(s)	121
BsiHKAI	GWGCWC	1 cut(s)	192
BsiSI	CCGG	1 cut(s)	297
BslI	CCNNNNNNNGG	3 cut(s)	391, 392, 393
BsmAI	GTCTC	1 cut(s)	12
BsmBI	CGTCTC	1 cut(s)	12
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	4 cut(s)	105, 168, 537, 671
BspACI	CCGC	3 cut(s)	119, 177, 230
BspCNI	CTCAG	2 cut(s)	22, 643
BspFNI	CGCG	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	290, 496
BspPI	GGATC	2 cut(s)	163, 666
BssECI	CCNNGG	2 cut(s)	162, 216
BssMI	GATC	4 cut(s)	105, 168, 537, 671
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	6 cut(s)	220, 250, 268, 280, 412, 583
Bst6I	CTCTTC	1 cut(s)	629
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	9, 630
BstDSI	CCRYGG	1 cut(s)	216
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	35, 477
BstFNI	CGCG	1 cut(s)	121
BstH2I	RGCGCY	1 cut(s)	375
BstHHI	GCGC	3 cut(s)	123, 374, 427
BstKTI	GATC	4 cut(s)	108, 171, 540, 674
BstMAI	GTCTC	1 cut(s)	12
BstMBI	GATC	4 cut(s)	105, 168, 537, 671
BstMWI	GCNNNNNNNGC	4 cut(s)	312, 361, 431, 503
BstPI	GGTNACC	1 cut(s)	92
BstUI	CGCG	1 cut(s)	121
BstX2I	RGATCY	2 cut(s)	537, 671
BstYI	RGATCY	2 cut(s)	537, 671
BtgI	CCRYGG	1 cut(s)	216
BtsCI	GGATG	2 cut(s)	35, 477
BtsIMutI	CAGTG	3 cut(s)	216, 417, 579
Cac8I	GCNNGC	1 cut(s)	436
CfoI	GCGC	3 cut(s)	123, 374, 427
Cfr13I	GGNCC	1 cut(s)	658
CviAII	CATG	3 cut(s)	89, 128, 735
DdeI	CTNAG	2 cut(s)	9, 630
DpnI	GATC	4 cut(s)	107, 170, 539, 673
DpnII	GATC	4 cut(s)	105, 168, 537, 671
DrdI	GACNNNNNNGTC	1 cut(s)	271
DseDI	GACNNNNNNGTC	1 cut(s)	271
Eam1104I	CTCTTC	1 cut(s)	629
EarI	CTCTTC	1 cut(s)	629
Ecl136II	GAGCTC	1 cut(s)	190
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	658
Eco53kI	GAGCTC	1 cut(s)	190
Eco91I	GGTNACC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	190
EcoO109I	RGGNCCY	1 cut(s)	658
EcoO65I	GGTNACC	1 cut(s)	92
EcoT38I	GRGCYC	1 cut(s)	192
Esp3I	CGTCTC	1 cut(s)	12
FaeI	CATG	3 cut(s)	92, 131, 738
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	3 cut(s)	88, 127, 734
FbaI	TGATCA	1 cut(s)	105
Fnu4HI	GCNGC	2 cut(s)	14, 177
FokI	GGATG	2 cut(s)	22, 464
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	2 cut(s)	14, 177
FspAI	RTGCGCAY	1 cut(s)	426
FspI	TGCGCA	1 cut(s)	426
GlaI	GCGC	3 cut(s)	122, 373, 426
GluI	GCNGC	2 cut(s)	14, 177
GsaI	CCCAGC	1 cut(s)	485
HaeII	RGCGCY	1 cut(s)	375
HapII	CCGG	1 cut(s)	297
HhaI	GCGC	3 cut(s)	123, 374, 427
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	3 cut(s)	92, 131, 738
Hin6I	GCGC	3 cut(s)	121, 372, 425
HinP1I	GCGC	3 cut(s)	121, 372, 425
HincII	GTYRAC	1 cut(s)	276
HindII	GTYRAC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	304
HinfI	GANTC	2 cut(s)	235, 310
HpaII	CCGG	1 cut(s)	297
HphI	GGTGA	7 cut(s)	178, 192, 197, 274, 280, 466, 640
Hpy166II	GTNNAC	3 cut(s)	216, 246, 276
Hpy188I	TCNGA	3 cut(s)	81, 344, 633
Hpy188III	TCNNGA	2 cut(s)	547, 571
Hpy8I	GTNNAC	3 cut(s)	216, 246, 276
HpyAV	CCTTC	4 cut(s)	49, 278, 397, 409
HpyCH4III	ACNGT	6 cut(s)	220, 250, 268, 280, 412, 583
HpyCH4IV	ACGT	1 cut(s)	5
HpyCH4V	TGCA	2 cut(s)	16, 597
HpyF10VI	GCNNNNNNNGC	4 cut(s)	312, 361, 431, 503
HpyF3I	CTNAG	2 cut(s)	9, 630
HpySE526I	ACGT	1 cut(s)	5
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	3 cut(s)	92, 131, 738
HspAI	GCGC	3 cut(s)	121, 372, 425
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	105, 168, 537, 671
LmnI	GCTCC	4 cut(s)	37, 361, 494, 503
LpnPI	CCDG	8 cut(s)	116, 168, 224, 310, 471, 495, 497, 607
LweI	GCATC	1 cut(s)	120
MaeII	ACGT	1 cut(s)	5
MaeIII	GTNAC	3 cut(s)	92, 143, 262
MalI	GATC	4 cut(s)	107, 170, 539, 673
MboI	GATC	4 cut(s)	105, 168, 537, 671
MboII	GAAGA	2 cut(s)	532, 646
MflI	RGATCY	2 cut(s)	537, 671
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	2 cut(s)	223, 639
MlyI	GAGTC	1 cut(s)	304
MmeI	TCCRAC	2 cut(s)	378, 481
MnlI	CCTC	9 cut(s)	109, 169, 172, 302, 329, 445, 457, 569, 671
MseI	TTAA	4 cut(s)	66, 84, 222, 585
MspA1I	CMGCKG	2 cut(s)	13, 230
MspI	CCGG	1 cut(s)	297
MvnI	CGCG	1 cut(s)	121
MwoI	GCNNNNNNNGC	4 cut(s)	312, 361, 431, 503
NdeII	GATC	4 cut(s)	105, 168, 537, 671
NlaIII	CATG	3 cut(s)	92, 131, 738
NlaIV	GGNNCC	2 cut(s)	290, 496
NmeAIII	GCCGAG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	262
NsbI	TGCGCA	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	15, 178
PleI	GAGTC	1 cut(s)	304
PpsI	GAGTC	1 cut(s)	304
PpuMI	RGGWCCY	1 cut(s)	658
Psp124BI	GAGCTC	1 cut(s)	192
Psp5II	RGGWCCY	1 cut(s)	658
PspEI	GGTNACC	1 cut(s)	92
PspFI	CCCAGC	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	290, 496
PspPI	GGNCC	1 cut(s)	658
PspPPI	RGGWCCY	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	537, 671
PvuII	CAGCTG	1 cut(s)	13
SacI	GAGCTC	1 cut(s)	192
SaqAI	TTAA	4 cut(s)	66, 84, 222, 585
SatI	GCNGC	2 cut(s)	14, 177
Sau3AI	GATC	4 cut(s)	105, 168, 537, 671
Sau96I	GGNCC	1 cut(s)	658
SchI	GAGTC	1 cut(s)	304
SduI	GDGCHC	1 cut(s)	192
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	658
Sse9I	AATT	2 cut(s)	223, 639
SsiI	CCGC	3 cut(s)	119, 177, 230
SspI	AATATT	1 cut(s)	589
SstI	GAGCTC	1 cut(s)	192
TaaI	ACNGT	6 cut(s)	220, 250, 268, 280, 412, 583
TaiI	ACGT	1 cut(s)	8
TaqI	TCGA	3 cut(s)	321, 555, 561
TasI	AATT	2 cut(s)	223, 639
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	1 cut(s)	235
Tru1I	TTAA	4 cut(s)	66, 84, 222, 585
Tru9I	TTAA	4 cut(s)	66, 84, 222, 585
TscAI	CASTG	3 cut(s)	216, 417, 586
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	1 cut(s)	13
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	3 cut(s)	532, 537, 599
TspGWI	ACGGA	1 cut(s)	161
TspRI	CASTG	3 cut(s)	216, 417, 586
VpaK11BI	GGWCC	1 cut(s)	658
XapI	RAATTY	1 cut(s)	639
XcmI	CCANNNNNNNNNTGG	1 cut(s)	394
ZraI	GACGTC	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.