Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0024483

Physical Location & Seq

Genomic Coordinates Reverse (-)

1472592 .. 1479718

Gene Structure 7127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG009400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGAATTCTCAGCTGCAGCAGGGACCCCACTATGAAGATCAAGTTTCCAATGATGTACTCAAACCTGCAGAGTATCAAGTAGTACTAACCATAAAAGCTGTGGTTACAGTCATAGTAACAGCCGGAGGCTTCCGATCCACTATAGGGATCATTCGTCACCTCGAGGACTTGGGAGGCAAAACCTTGCTGCTGGAGCTGGTTAGTGCCAAGCTTGATCCCAAGACGGGAAAAGAGAAGGAAGCGATCAAGGGGCACTCGCACAGAGTGAGGAGAGACGTTGAGGAGGTGATATATGAGAGTGAGTTCAGCATCCCAGCAGGTTTTGGAGAGATTGGAGCTGTTCTGGTTGAGAATGAGCACCACAAGGAGATTTACATCCAGACCATCGACCTCACCGGCTTCCCAAATGCCTCCACTCTCTCCATTCCCTGTACCTCATGGGTTCATTCCAAACATTATAATGCACAGAAGAGAGTCTTCTTCACCAACAAGATTATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006629 GO:0006631 GO:0006690 GO:0006950 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009526 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009605 GO:0009607 GO:0009611 GO:0009617 GO:0009620 GO:0009694 GO:0009695 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009941 GO:0009987 GO:0010033 GO:0010597 GO:0010817 GO:0014070 GO:0016020 GO:0016053 GO:0016165 GO:0016166 GO:0016491 GO:0016627 GO:0016701 GO:0016702 GO:0019372 GO:0019752 GO:0030258 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032787 GO:0034357 GO:0034440 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042651 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046677 GO:0050896 GO:0051213 GO:0051704 GO:0051707 GO:0055035 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0080027 GO:1901568 GO:1901576 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00591 ko00592 ko01100 ko01110 map00591 map00592 map01100 map01110

Pfam Domains

Protein Families

Lipoxygenase PLAT

Protein Analysis

166

Amino Acids

18.52

Weight (kDa)

6.44

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PLAT	PF01477	88 - 161	3.1e-08	PLAT/LH2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0024483)

Species	Orthologous Gene IDs
malus_domestica	MD07G1004600.v1.1
pyrus_communis	pycom02g26580
rosa_samantha	Rh1CG009400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	459
AbsI	CCTCGAGG	1 cut(s)	161
Acc36I	ACCTGC	2 cut(s)	73, 308
AclWI	GGATC	3 cut(s)	129, 155, 209
AcsI	RAATTY	1 cut(s)	4
AdeI	CACNNNGTG	1 cut(s)	265
AfaI	GTAC	3 cut(s)	57, 84, 433
AfiI	CCNNNNNNNGG	2 cut(s)	144, 224
AluBI	AGCT	5 cut(s)	13, 98, 196, 211, 338
AluI	AGCT	5 cut(s)	13, 98, 196, 211, 338
Alw21I	GWGCWC	1 cut(s)	360
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	3 cut(s)	129, 155, 209
Ama87I	CYCGRG	1 cut(s)	161
ApeKI	GCWGC	3 cut(s)	13, 16, 187
ApoI	RAATTY	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	4 cut(s)	149, 298, 385, 475
AvaI	CYCGRG	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	23
BaeGI	GKGCMC	1 cut(s)	255
BbsI	GAAGAC	1 cut(s)	469
Bbv12I	GWGCWC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	28, 174
BccI	CCATC	1 cut(s)	392
BcoDI	GTCTC	1 cut(s)	267
BfmI	CTRYAG	3 cut(s)	14, 66, 141
BfuAI	ACCTGC	2 cut(s)	73, 308
BisI	GCNGC	3 cut(s)	14, 17, 188
BlsI	GCNGC	3 cut(s)	15, 18, 189
BmcAI	AGTACT	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	23
BmeT110I	CYCGRG	1 cut(s)	161
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	24, 25
BmsI	GCATC	1 cut(s)	318
BpiI	GAAGAC	1 cut(s)	469
BpmI	CTGGAG	1 cut(s)	212
BsaBI	GATNNNNATC	1 cut(s)	374
Bsc4I	CCNNNNNNNGG	2 cut(s)	144, 224
Bse118I	RCCGGY	1 cut(s)	395
Bse8I	GATNNNNATC	1 cut(s)	374
BseGI	GGATG	2 cut(s)	309, 375
BseJI	GATNNNNATC	1 cut(s)	374
BseLI	CCNNNNNNNGG	2 cut(s)	144, 224
BseMII	CTCAG	1 cut(s)	23
BseRI	GAGGAG	2 cut(s)	283, 296
BseSI	GKGCMC	1 cut(s)	255
BseXI	GCAGC	2 cut(s)	28, 174
BseYI	CCCAGC	1 cut(s)	313
BsiHKAI	GWGCWC	1 cut(s)	360
BsiHKCI	CYCGRG	1 cut(s)	161
BsiSI	CCGG	2 cut(s)	123, 396
BslFI	GGGAC	1 cut(s)	36
BslI	CCNNNNNNNGG	2 cut(s)	144, 224
BsmAI	GTCTC	1 cut(s)	267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	36
BsoBI	CYCGRG	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	255, 360
Bsp143I	GATC	5 cut(s)	37, 134, 147, 214, 243
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	24, 25
BspMAI	CTGCAG	2 cut(s)	18, 70
BspMI	ACCTGC	2 cut(s)	73, 308
BspPI	GGATC	3 cut(s)	129, 155, 209
BsrFI	RCCGGY	1 cut(s)	395
BssAI	RCCGGY	1 cut(s)	395
BssMI	GATC	5 cut(s)	37, 134, 147, 214, 243
Bst4CI	ACNGT	1 cut(s)	109
Bst6I	CTCTTC	1 cut(s)	464
BstDEI	CTNAG	1 cut(s)	9
BstF5I	GGATG	2 cut(s)	309, 375
BstKTI	GATC	5 cut(s)	40, 137, 150, 217, 246
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	5 cut(s)	37, 134, 147, 214, 243
BstMWI	GCNNNNNNNGC	1 cut(s)	193
BstSFI	CTRYAG	3 cut(s)	14, 66, 141
BstSLI	GKGCMC	1 cut(s)	255
BstV1I	GCAGC	2 cut(s)	28, 174
BstV2I	GAAGAC	1 cut(s)	469
BtsCI	GGATG	2 cut(s)	309, 375
BveI	ACCTGC	2 cut(s)	73, 308
Cfr10I	RCCGGY	1 cut(s)	395
Cfr13I	GGNCC	1 cut(s)	23
Csp6I	GTAC	3 cut(s)	56, 83, 432
CviAII	CATG	1 cut(s)	438
CviJI	RGCY	8 cut(s)	13, 98, 122, 129, 196, 211, 338, 399
CviKI_1	RGCY	8 cut(s)	13, 98, 122, 129, 196, 211, 338, 399
CviQI	GTAC	3 cut(s)	56, 83, 432
DdeI	CTNAG	1 cut(s)	9
DpnI	GATC	5 cut(s)	39, 136, 149, 216, 245
DpnII	GATC	5 cut(s)	37, 134, 147, 214, 243
DraIII	CACNNNGTG	1 cut(s)	265
Eam1104I	CTCTTC	1 cut(s)	464
EarI	CTCTTC	1 cut(s)	464
Eco47I	GGWCC	1 cut(s)	23
Eco88I	CYCGRG	1 cut(s)	161
EcoO109I	RGGNCCY	1 cut(s)	23
EcoRI	GAATTC	1 cut(s)	4
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	1 cut(s)	441
FalI	AAGNNNNNCTT	2 cut(s)	461, 493
FaqI	GGGAC	1 cut(s)	36
FatI	CATG	1 cut(s)	437
Fnu4HI	GCNGC	3 cut(s)	14, 17, 188
FokI	GGATG	2 cut(s)	296, 362
Fsp4HI	GCNGC	3 cut(s)	14, 17, 188
GluI	GCNGC	3 cut(s)	14, 17, 188
GsaI	CCCAGC	1 cut(s)	317
GsuI	CTGGAG	1 cut(s)	212
HapII	CCGG	2 cut(s)	123, 396
Hin1II	CATG	1 cut(s)	441
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	1 cut(s)	474
HpaII	CCGG	2 cut(s)	123, 396
HphI	GGTGA	4 cut(s)	149, 298, 385, 475
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	379
HpyAV	CCTTC	1 cut(s)	229
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	276
HpyCH4V	TGCA	3 cut(s)	16, 68, 464
HpyF10VI	GCNNNNNNNGC	1 cut(s)	193
HpyF3I	CTNAG	1 cut(s)	9
HpySE526I	ACGT	1 cut(s)	276
Hsp92II	CATG	1 cut(s)	441
KflI	GGGWCCC	1 cut(s)	23
Kzo9I	GATC	5 cut(s)	37, 134, 147, 214, 243
LmnI	GCTCC	2 cut(s)	193, 335
Lsp1109I	GCAGC	2 cut(s)	28, 174
LweI	GCATC	1 cut(s)	318
MaeII	ACGT	1 cut(s)	276
MaeIII	GTNAC	3 cut(s)	103, 115, 155
MalI	GATC	5 cut(s)	39, 136, 149, 216, 245
MboI	GATC	5 cut(s)	37, 134, 147, 214, 243
MboII	GAAGA	4 cut(s)	47, 469, 472, 481
MhlI	GDGCHC	2 cut(s)	255, 360
MluCI	AATT	1 cut(s)	4
MlyI	GAGTC	1 cut(s)	483
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	123, 396
MwoI	GCNNNNNNNGC	1 cut(s)	193
NdeII	GATC	5 cut(s)	37, 134, 147, 214, 243
NlaIII	CATG	1 cut(s)	441
NlaIV	GGNNCC	2 cut(s)	24, 25
NmuCI	GTSAC	1 cut(s)	155
PaeR7I	CTCGAG	1 cut(s)	161
PkrI	GCNGC	3 cut(s)	15, 18, 189
PleI	GAGTC	1 cut(s)	482
PpsI	GAGTC	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	23
PsiI	TTATAA	1 cut(s)	459
Psp5II	RGGWCCY	1 cut(s)	23
PspFI	CCCAGC	1 cut(s)	313
PspN4I	GGNNCC	2 cut(s)	24, 25
PspPI	GGNCC	1 cut(s)	23
PspPPI	RGGWCCY	1 cut(s)	23
PspXI	VCTCGAGB	1 cut(s)	161
PstI	CTGCAG	2 cut(s)	18, 70
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	3 cut(s)	57, 84, 433
RsaNI	GTAC	3 cut(s)	56, 83, 432
RseI	CAYNNNNRTG	1 cut(s)	459
SatI	GCNGC	3 cut(s)	14, 17, 188
Sau3AI	GATC	5 cut(s)	37, 134, 147, 214, 243
Sau96I	GGNCC	1 cut(s)	23
ScaI	AGTACT	1 cut(s)	84
SchI	GAGTC	1 cut(s)	483
SduI	GDGCHC	2 cut(s)	255, 360
SfaNI	GCATC	1 cut(s)	318
SfcI	CTRYAG	3 cut(s)	14, 66, 141
Sfr274I	CTCGAG	1 cut(s)	161
SinI	GGWCC	1 cut(s)	23
SlaI	CTCGAG	1 cut(s)	161
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	1 cut(s)	4
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	279
TaqI	TCGA	2 cut(s)	162, 387
TasI	AATT	1 cut(s)	4
TatI	WGTACW	2 cut(s)	55, 82
TseFI	GTSAC	1 cut(s)	155
TseI	GCWGC	3 cut(s)	13, 16, 187
Tsp45I	GTSAC	1 cut(s)	155
TspDTI	ATGAA	3 cut(s)	17, 48, 434
VpaK11BI	GGWCC	1 cut(s)	23
XapI	RAATTY	1 cut(s)	4
XcmI	CCANNNNNNNNNTGG	1 cut(s)	97
XhoI	CTCGAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.