Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028859

Physical Location & Seq

Genomic Coordinates Reverse (-)

3876475 .. 3878565

Gene Structure 2091 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1045400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1431 bp

ATGGCAGCAGAAGATCAGTCCGTTGTAACTCAGGTGTGGAACTTCCTCTCTGTGCCTTTCAGTCGTTTTGACCAACGCTTGAATGATAGGAGGATAAAGGAGTTATATCATAGATTAAAATTCCTTGCAAACGAAAAGGACATTCTTGGTCTTCAAAAAGGTGTTCGGAAGGTTTCACAAATGCCAACAACTTGTTTGGTTGATAAATCTTTTGTAGTTGGTAGAGATGATGATAAAGAAGAGTTGATAAGACTGTTGATCTCTGATGCCGAAGGCAGGAATAATGTTTCTGTCATTACTATAGTAGGAATGGCCGGGATTGGTAAGACAACACTTGCTCAACTCGTTTACAACGATGAAAGAGTGAAAGAGCATTTTGATATTCAAGCTTGGGTTTGCGTTTCCGAAGATTTTGATGCTGTTAGGGTCACTAAAACCCTGCTCGAGTCAATCACTTCGACTGTTTGTGACATTACCGATCTAAATTTTGTTCAGGTCCAGCTAAAACACCAAGTGAGGGGAAAGAGATTCTTATTTGTGTTGGACGACCTCTGGAATGAGAACTATCATGATTGGAATCTCCTGCAAGTTCCTTTTCTCTATGCGGCAGGGGGAAGTAAGGTCGTGATAACAACGCGGAGTGAAACAGTTGCTTCAATCGTGCGCAATGTACCTACTCACTACTTAGAGCCGCTGTCCGATGAAGATTGTTGGTCGTTGATTTTAAAACATGCTTTGGGAGACAGTAACCCCACTGAACATTCAAACATTCGAGAAACTGATAGGGAAACTGCAATTCGCAAGTGCAATGGTTTGCCTTTAATTGCACGAGCACTAGGGGGTCTCTTACGAAGCACAACTTCTGGTTCTGAGGAATGGCATCACATATTACATACCAATATTTGGGAGCTACCCTCCATTGCTGGCATTCTCCCAATTTGTTTACTACAACAATTAAGGCAGAAGGGGAGAGAATCACATCAAAAACGCCGCTCCGCTAGGACAGAGGCAAATTCAGCAGAGTGGATATTTTTAGTCACTAGCCTTTGCATGGAGATTTTATCAGCTGCTTTTGATCAGGCTTCGTCCCCAAGAAGGCCGGGGTATGCCCTGTTCGGAATGCTCTTCGCTATTGCAGCTCTACTCACTTGCATATGGGAGCTGATTTACAAAGGCAGGAAACATAACGTGGTGCGGAGGAAGATGGGATGTTACATGCTTTTTGGTTCTGCCAATGAAATTTTTGGGTTACTCGGAGGCATCGCTCAGTGTGTTTGCTCGATAGTTCAATACTTTTATTACATTCGGCGCGCTGATAATCCTATCAAACTGTCCCTTTTGCCTGCCATCTTTCTCATATGTTTGATTGCTACAAGATTAAGTAGGAAACGAATGCAGACCACAGATGAGACCGGTGAACATACAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04014 map04014

Pfam Domains

Protein Families

FNIP LRR_8 NB-ARC

Protein Analysis

477

Amino Acids

54.03

Weight (kDa)

8.38

Isoelectric Point (pI)

47.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	72 - 151	7.9e-06	AAA ATPase domain
NB-ARC	PF00931	77 - 245	4.9e-35	NB-ARC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028859)

Species	Orthologous Gene IDs
malus_domestica	MD07G1045400.v1.1
pyrus_communis	pycom07g03250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	665
AccB7I	CCANNNNNTGG	1 cut(s)	903
AccBSI	CCGCTC	1 cut(s)	993
AccII	CGCG	2 cut(s)	637, 1311
AciI	CCGC	6 cut(s)	605, 637, 692, 991, 996, 1195
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	4 cut(s)	119, 484, 1012, 1239
AdeI	CACNNNGTG	1 cut(s)	514
AfaI	GTAC	1 cut(s)	672
AfiI	CCNNNNNNNGG	5 cut(s)	276, 517, 903, 1051, 1095
AgeI	ACCGGT	1 cut(s)	1412
AgsI	TTSAA	6 cut(s)	82, 155, 386, 657, 765, 1289
AluBI	AGCT	7 cut(s)	389, 502, 910, 1067, 1139, 1162, 1427
AluI	AGCT	7 cut(s)	389, 502, 910, 1067, 1139, 1162, 1427
Alw21I	GWGCWC	1 cut(s)	835
Alw26I	GTCTC	3 cut(s)	735, 848, 1403
Ama87I	CYCGRG	1 cut(s)	443
AoxI	GGCC	2 cut(s)	312, 1097
ApeKI	GCWGC	3 cut(s)	5, 1067, 1136
ApoI	RAATTY	4 cut(s)	119, 484, 1012, 1239
AsiGI	ACCGGT	1 cut(s)	1412
AspLEI	GCGC	3 cut(s)	666, 1311, 1313
AspS9I	GGNCC	1 cut(s)	496
AsuC2I	CCSGG	2 cut(s)	316, 1101
AsuHPI	GGTGA	1 cut(s)	1427
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	496
BauI	CACGAG	1 cut(s)	828
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	835
BbvI	GCAGC	3 cut(s)	17, 1054, 1148
BccI	CCATC	2 cut(s)	1198, 1355
BclI	TGATCA	1 cut(s)	1075
BcnI	CCSGG	2 cut(s)	316, 1101
BcoDI	GTCTC	3 cut(s)	735, 848, 1403
BfaI	CTAG	3 cut(s)	836, 999, 1041
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	6 cut(s)	6, 606, 692, 991, 1068, 1137
BlsI	GCNGC	6 cut(s)	7, 607, 693, 992, 1069, 1138
Bme1390I	CCNGG	2 cut(s)	316, 1101
Bme18I	GGWCC	1 cut(s)	496
BmeT110I	CYCGRG	1 cut(s)	443
BmgT120I	GGNCC	1 cut(s)	496
BmrFI	CCNGG	2 cut(s)	316, 1101
BmsI	GCATC	4 cut(s)	256, 406, 889, 1269
BpiI	GAAGAC	1 cut(s)	143
BplI	GAGNNNNNCTC	2 cut(s)	899, 931
BpuMI	CCSGG	2 cut(s)	316, 1101
BsaBI	GATNNNNATC	1 cut(s)	576
BsaI	GGTCTC	2 cut(s)	848, 1403
BsaJI	CCNNGG	1 cut(s)	1100
BsaWI	WCCGGW	1 cut(s)	1412
Bsc4I	CCNNNNNNNGG	5 cut(s)	276, 517, 903, 1051, 1095
Bse118I	RCCGGY	1 cut(s)	1412
Bse3DI	GCAATG	3 cut(s)	673, 814, 918
Bse8I	GATNNNNATC	1 cut(s)	576
BseDI	CCNNGG	1 cut(s)	1100
BseGI	GGATG	1 cut(s)	1214
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	5 cut(s)	276, 517, 903, 1051, 1095
BseMI	GCAATG	3 cut(s)	673, 814, 918
BseMII	CTCAG	3 cut(s)	44, 861, 1280
BsePI	GCGCGC	1 cut(s)	1309
BseXI	GCAGC	3 cut(s)	17, 1054, 1148
Bsh1236I	CGCG	2 cut(s)	637, 1311
BshFI	GGCC	2 cut(s)	314, 1099
BshTI	ACCGGT	1 cut(s)	1412
BsiHKAI	GWGCWC	1 cut(s)	835
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	3 cut(s)	315, 1100, 1413
BslFI	GGGAC	2 cut(s)	1072, 1318
BslI	CCNNNNNNNGG	5 cut(s)	276, 517, 903, 1051, 1095
BsmAI	GTCTC	3 cut(s)	735, 848, 1403
BsmFI	GGGAC	2 cut(s)	1072, 1318
BsmI	GAATGC	3 cut(s)	927, 1125, 1398
BsnI	GGCC	2 cut(s)	314, 1099
Bso31I	GGTCTC	2 cut(s)	848, 1403
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	835
Bsp143I	GATC	4 cut(s)	13, 258, 478, 1075
BspACI	CCGC	6 cut(s)	605, 637, 692, 991, 996, 1195
BspANI	GGCC	2 cut(s)	314, 1099
BspCNI	CTCAG	3 cut(s)	43, 862, 1279
BspFNI	CGCG	2 cut(s)	637, 1311
BspHI	TCATGA	1 cut(s)	568
BspQI	GCTCTTC	1 cut(s)	1130
BspTNI	GGTCTC	2 cut(s)	848, 1403
BsrBI	CCGCTC	1 cut(s)	993
BsrDI	GCAATG	3 cut(s)	673, 814, 918
BsrFI	RCCGGY	1 cut(s)	1412
BssAI	RCCGGY	1 cut(s)	1412
BssECI	CCNNGG	1 cut(s)	1100
BssHII	GCGCGC	1 cut(s)	1309
BssMI	GATC	4 cut(s)	13, 258, 478, 1075
BssSI	CACGAG	1 cut(s)	828
Bst2BI	CACGAG	1 cut(s)	828
Bst4CI	ACNGT	5 cut(s)	255, 463, 649, 746, 1332
Bst6I	CTCTTC	2 cut(s)	234, 1130
BstC8I	GCNNGC	3 cut(s)	925, 1311, 1344
BstDEI	CTNAG	5 cut(s)	30, 685, 870, 1266, 1428
BstF5I	GGATG	1 cut(s)	1214
BstFNI	CGCG	2 cut(s)	637, 1311
BstHHI	GCGC	3 cut(s)	666, 1311, 1313
BstKTI	GATC	4 cut(s)	16, 261, 481, 1078
BstMAI	GTCTC	3 cut(s)	735, 848, 1403
BstMBI	GATC	4 cut(s)	13, 258, 478, 1075
BstMWI	GCNNNNNNNGC	2 cut(s)	1016, 1136
BstNSI	RCATGY	2 cut(s)	734, 1219
BstSCI	CCNGG	2 cut(s)	314, 1099
BstSFI	CTRYAG	1 cut(s)	300
BstUI	CGCG	2 cut(s)	637, 1311
BstV1I	GCAGC	3 cut(s)	17, 1054, 1148
BstV2I	GAAGAC	1 cut(s)	143
BsuRI	GGCC	2 cut(s)	314, 1099
BtgZI	GCGATG	1 cut(s)	1246
BtsCI	GGATG	1 cut(s)	1214
BtsIMutI	CAGTG	2 cut(s)	753, 1274
Cac8I	GCNNGC	3 cut(s)	925, 1311, 1344
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	3 cut(s)	666, 1311, 1313
Cfr10I	RCCGGY	1 cut(s)	1412
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	1 cut(s)	671
CspAI	ACCGGT	1 cut(s)	1412
CviAII	CATG	4 cut(s)	569, 731, 1051, 1216
CviQI	GTAC	1 cut(s)	671
DdeI	CTNAG	5 cut(s)	30, 685, 870, 1266, 1428
DpnI	GATC	4 cut(s)	15, 260, 480, 1077
DpnII	GATC	4 cut(s)	13, 258, 478, 1075
DraI	TTTAAA	1 cut(s)	726
DraIII	CACNNNGTG	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	234, 1130
EarI	CTCTTC	2 cut(s)	234, 1130
Eco31I	GGTCTC	2 cut(s)	848, 1403
Eco47I	GGWCC	1 cut(s)	496
Eco88I	CYCGRG	1 cut(s)	443
FaeI	CATG	4 cut(s)	572, 734, 1054, 1219
FalI	AAGNNNNNCTT	4 cut(s)	515, 547, 844, 876
FaqI	GGGAC	2 cut(s)	1072, 1318
FatI	CATG	4 cut(s)	568, 730, 1050, 1215
FauNDI	CATATG	2 cut(s)	1154, 1358
FbaI	TGATCA	1 cut(s)	1075
Fnu4HI	GCNGC	6 cut(s)	6, 606, 692, 991, 1068, 1137
FokI	GGATG	1 cut(s)	1221
Fsp4HI	GCNGC	6 cut(s)	6, 606, 692, 991, 1068, 1137
FspBI	CTAG	3 cut(s)	836, 999, 1041
FspI	TGCGCA	1 cut(s)	665
GlaI	GCGC	3 cut(s)	665, 1310, 1312
GluI	GCNGC	6 cut(s)	6, 606, 692, 991, 1068, 1137
HaeIII	GGCC	2 cut(s)	314, 1099
HapII	CCGG	3 cut(s)	315, 1100, 1413
HhaI	GCGC	3 cut(s)	666, 1311, 1313
Hin1II	CATG	4 cut(s)	572, 734, 1054, 1219
Hin6I	GCGC	3 cut(s)	664, 1309, 1311
HinP1I	GCGC	3 cut(s)	664, 1309, 1311
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	4 cut(s)	446, 528, 577, 974
HpaII	CCGG	3 cut(s)	315, 1100, 1413
HphI	GGTGA	1 cut(s)	1427
Hpy166II	GTNNAC	3 cut(s)	349, 944, 1418
Hpy188I	TCNGA	7 cut(s)	168, 265, 406, 700, 871, 1118, 1256
Hpy188III	TCNNGA	4 cut(s)	553, 569, 625, 773
Hpy8I	GTNNAC	3 cut(s)	349, 944, 1418
HpyAV	CCTTC	4 cut(s)	163, 266, 958, 1089
HpyCH4III	ACNGT	5 cut(s)	255, 463, 649, 746, 1332
HpyCH4IV	ACGT	1 cut(s)	1188
HpyCH4V	TGCA	9 cut(s)	128, 586, 794, 807, 827, 1050, 1136, 1152, 1396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1016, 1136
HpyF3I	CTNAG	5 cut(s)	30, 685, 870, 1266, 1428
HpySE526I	ACGT	1 cut(s)	1188
Hsp92II	CATG	4 cut(s)	572, 734, 1054, 1219
HspAI	GCGC	3 cut(s)	664, 1309, 1311
Ksp22I	TGATCA	1 cut(s)	1075
Kzo9I	GATC	4 cut(s)	13, 258, 478, 1075
LguI	GCTCTTC	1 cut(s)	1130
LmnI	GCTCC	3 cut(s)	907, 998, 1159
Lsp1109I	GCAGC	3 cut(s)	17, 1054, 1148
LweI	GCATC	4 cut(s)	256, 406, 889, 1269
MaeI	CTAG	3 cut(s)	836, 999, 1041
MaeII	ACGT	1 cut(s)	1188
MaeIII	GTNAC	7 cut(s)	25, 427, 467, 746, 1036, 1211, 1248
MalI	GATC	4 cut(s)	15, 260, 480, 1077
MbiI	CCGCTC	1 cut(s)	993
MboI	GATC	4 cut(s)	13, 258, 478, 1075
MboII	GAAGA	7 cut(s)	23, 143, 251, 419, 716, 1117, 1213
MhlI	GDGCHC	1 cut(s)	835
MluCI	AATT	8 cut(s)	119, 484, 795, 822, 936, 953, 1012, 1239
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	1 cut(s)	522
MnlI	CCTC	9 cut(s)	56, 84, 510, 560, 865, 925, 1000, 1191, 1250
MseI	TTAA	5 cut(s)	116, 725, 821, 956, 1379
MspA1I	CMGCKG	2 cut(s)	694, 1067
MspI	CCGG	3 cut(s)	315, 1100, 1413
MspR9I	CCNGG	2 cut(s)	316, 1101
Mva1269I	GAATGC	3 cut(s)	927, 1125, 1398
MvnI	CGCG	2 cut(s)	637, 1311
MwoI	GCNNNNNNNGC	2 cut(s)	1016, 1136
NciI	CCSGG	2 cut(s)	316, 1101
NdeI	CATATG	2 cut(s)	1154, 1358
NdeII	GATC	4 cut(s)	13, 258, 478, 1075
NlaIII	CATG	4 cut(s)	572, 734, 1054, 1219
NmuCI	GTSAC	3 cut(s)	427, 467, 1036
NsbI	TGCGCA	1 cut(s)	665
NspI	RCATGY	2 cut(s)	734, 1219
PaeR7I	CTCGAG	1 cut(s)	443
PagI	TCATGA	1 cut(s)	568
PauI	GCGCGC	1 cut(s)	1309
PciSI	GCTCTTC	1 cut(s)	1130
PcsI	WCGNNNNNNNCGW	1 cut(s)	351
PctI	GAATGC	3 cut(s)	927, 1125, 1398
PfeI	GAWTC	3 cut(s)	528, 577, 974
PflMI	CCANNNNNTGG	1 cut(s)	903
PinAI	ACCGGT	1 cut(s)	1412
PkrI	GCNGC	6 cut(s)	7, 607, 693, 992, 1069, 1138
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PspPI	GGNCC	1 cut(s)	496
PspXI	VCTCGAGB	1 cut(s)	443
PsrI	GAACNNNNNNTAC	2 cut(s)	1097, 1129
PteI	GCGCGC	1 cut(s)	1309
PvuII	CAGCTG	1 cut(s)	1067
RsaI	GTAC	1 cut(s)	672
RsaNI	GTAC	1 cut(s)	671
SapI	GCTCTTC	1 cut(s)	1130
SaqAI	TTAA	5 cut(s)	116, 725, 821, 956, 1379
SatI	GCNGC	6 cut(s)	6, 606, 692, 991, 1068, 1137
Sau3AI	GATC	4 cut(s)	13, 258, 478, 1075
Sau96I	GGNCC	1 cut(s)	496
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	2 cut(s)	316, 1101
SduI	GDGCHC	1 cut(s)	835
SfaNI	GCATC	4 cut(s)	256, 406, 889, 1269
SfcI	CTRYAG	1 cut(s)	300
Sfr274I	CTCGAG	1 cut(s)	443
SinI	GGWCC	1 cut(s)	496
SlaI	CTCGAG	1 cut(s)	443
SmlI	CTYRAG	1 cut(s)	443
SmoI	CTYRAG	1 cut(s)	443
Sse9I	AATT	8 cut(s)	119, 484, 795, 822, 936, 953, 1012, 1239
SsiI	CCGC	6 cut(s)	605, 637, 692, 991, 996, 1195
SspI	AATATT	1 cut(s)	901
SspMI	CTAG	3 cut(s)	836, 999, 1041
StyD4I	CCNGG	2 cut(s)	314, 1099
TaaI	ACNGT	5 cut(s)	255, 463, 649, 746, 1332
TaiI	ACGT	1 cut(s)	1191
TaqI	TCGA	4 cut(s)	444, 458, 772, 1280
TasI	AATT	8 cut(s)	119, 484, 795, 822, 936, 953, 1012, 1239
TauI	GCSGC	3 cut(s)	608, 694, 993
TfiI	GAWTC	3 cut(s)	528, 577, 974
Tru1I	TTAA	5 cut(s)	116, 725, 821, 956, 1379
Tru9I	TTAA	5 cut(s)	116, 725, 821, 956, 1379
TscAI	CASTG	2 cut(s)	760, 1274
TseFI	GTSAC	3 cut(s)	427, 467, 1036
TseI	GCWGC	3 cut(s)	5, 1067, 1136
Tsp45I	GTSAC	3 cut(s)	427, 467, 1036
TspDTI	ATGAA	3 cut(s)	372, 717, 1251
TspGWI	ACGGA	1 cut(s)	10
TspRI	CASTG	2 cut(s)	760, 1274
Van91I	CCANNNNNTGG	1 cut(s)	903
VpaK11BI	GGWCC	1 cut(s)	496
XapI	RAATTY	4 cut(s)	119, 484, 1012, 1239
XceI	RCATGY	2 cut(s)	734, 1219
XhoI	CTCGAG	1 cut(s)	443
XspI	CTAG	3 cut(s)	836, 999, 1041

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.