MD07G1057700.v1.1

Cyclic dof factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0024481
Physical Location & Seq
Forward (+)
5348996 .. 5351671
2676 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1057700.v1.1.491

Sequence Viewer

Length: 1428 bp
ATGTCCGAAGTGGGAGATCCAGCCATTAAGCTCTTCGGGAGGATTATTCCGCTCCCACAACTTCAGATTCACGATTTGTCCGCCGATAAAGAGTGTTTGGTGGCAGATACGGGTGAGTGTAGAGAAATGGAGGACCCTTCTGTAGAAAAATCCTGCACGCAAGATACATCTTCGGAACTAGATAATAGCAGAGAAAACAATCGCCAAGGCCTAATCCATGAGAATGAGGGTGAAGTTAATTGTGATCAAGGAGAAGACCAATGCGTGGATAGTGATACGAAAGGCATAGAAAAGTCTCTCAGAAAGCCAGACAAGGTTCTTCCTTGCCCTCGCTGCAAAAGCTTAGAAACAAAGTTTTGCTATTTCAATAATTACAGTGTTTACCAACCGAGACACTTTTGCAAGAGCTGCCAAAGATATTGGACTGCTGGGGGAACCATAAGAAATGTTCCTCTAGGTACTAGGCGGCGCAAGAATAAGCATTCATCTTCGCAGTATCATCAGGTAGTGGGACAACCGAATGCAGTACCAGTCACCCAGGGAGGCACCCTTAACGTTGTTGGCCAACAGCATCTTTCACCTTGTGGACTTCCAGCCTCTCCAAAGCCTGTCAATGAGATGAAGGAAGGCTTAAGTTCTGTCTCAGATGCGCTTTTAGTTGAATCTACAGAGACTGCCTCGAACCAGAAACACCAGATGAGAAATTCTGAGACTGGCTCTGCAGCTGACGGCGATGGTGGTTCCTTATCAGCCACTGCTTCACAGCACATTGCGTGTCTGACAAAAGAAATGAAGCAGGGTGGTCTGCCAGGATATGACAATGATTCTAGTCATATGTATACTATGCAATATTGCCCTGTTCCTCAATGGGCCAAGACTCCAAGTTGGGGCATAATGATGTTTGGATCTGATAGCAGTAATCCTAATCCTTCTCATGTAGGTCCTCTGCCTATGGTTACAGTTCCTAGTTTTTGTACTCCCACTTTCGCTTTCCCATTTGTGCCTTCCTTGTACTGGGGTTACATGCCAAGCTGGGACTCCAGAAAATGGAATTCTCAGCTGGTTGGATCTGCTGGCAGCTTGTCACTTTTGTCTTCCTCTGGCAACAGCGGATGTTCGGGCAATAGCTCGGCAACCTTGGGAAAATATGCAAGAGATGCAAATGTACATGAAGATGTAATAACAAAACAGTGCCTTTGGGTACCCAAGACTTTGAGAATTGATGACCCAGAAGAGGCTGCAAAGAGTTCTATATGGTCTACCTTGCGTATCAAACAGGATAAGAATGAACTTGTAGTTAGAGGTGGTATTTTTAAAGCTTTCCGAAAGAAATCAGATACTAAAACCCAAACATTAGATGCTGATCGAGTTTTACAGGCAAATCCAGCAGCCCTCTCTCGCTCTCAATCCTTCCAGGAGACCACGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

476

Amino Acids

52.06

Weight (kDa)

6.6

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 105 - 161 1.2e-30 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024481)

Species Orthologous Gene IDs
malus_domestica MD07G1057700.v1.1
prunus_persica Prupe.2G063800_v2.0.a1
pyrus_communis pycom07g04390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1201
AccB1I GGYRCC 2 cut(s) 545, 1201
AccB7I CCANNNNNTGG 2 cut(s) 265, 1047
AccBSI CCGCTC 1 cut(s) 52
AccI GTMKAC 2 cut(s) 839, 1259
AciI CCGC 4 cut(s) 50, 81, 466, 1110
AclI AACGTT 1 cut(s) 555
AclWI GGATC 3 cut(s) 11, 913, 1075
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 2 cut(s) 703, 1051
AcuI CTGAAG 1 cut(s) 47
AdeI CACNNNGTG 1 cut(s) 584
AfaI GTAC 6 cut(s) 460, 528, 976, 1013, 1167, 1203
AfiI CCNNNNNNNGG 5 cut(s) 265, 887, 1014, 1047, 1234
AflII CTTAAG 1 cut(s) 631
AgsI TTSAA 2 cut(s) 367, 662
AjnI CCWGG 3 cut(s) 537, 808, 1413
AluBI AGCT 9 cut(s) 31, 342, 408, 725, 1032, 1060, 1080, 1128, 1319
AluI AGCT 9 cut(s) 31, 342, 408, 725, 1032, 1060, 1080, 1128, 1319
Alw26I GTCTC 6 cut(s) 300, 385, 646, 665, 704, 1412
AlwI GGATC 3 cut(s) 11, 913, 1075
AlwNI CAGNNNCTG 2 cut(s) 674, 755
AoxI GGCC 3 cut(s) 208, 562, 870
ApeKI GCWGC 6 cut(s) 333, 408, 722, 1077, 1238, 1388
ApoI RAATTY 2 cut(s) 703, 1051
Asp718I GGTACC 1 cut(s) 1201
AspLEI GCGC 2 cut(s) 471, 652
AspS9I GGNCC 3 cut(s) 133, 870, 941
AsuHPI GGTGA 4 cut(s) 125, 242, 526, 570
AvaII GGWCC 2 cut(s) 133, 941
BalI TGGCCA 1 cut(s) 564
BanI GGYRCC 2 cut(s) 545, 1201
BbsI GAAGAC 2 cut(s) 261, 1086
BbvI GCAGC 6 cut(s) 320, 395, 734, 1089, 1225, 1400
BccI CCATC 1 cut(s) 728
BceAI ACGGC 1 cut(s) 745
BciT130I CCWGG 3 cut(s) 539, 810, 1415
BclI TGATCA 1 cut(s) 244
BcoDI GTCTC 6 cut(s) 300, 385, 646, 665, 704, 1412
BfaI CTAG 5 cut(s) 179, 455, 462, 828, 966
BfmI CTRYAG 3 cut(s) 141, 666, 720
BfrI CTTAAG 1 cut(s) 631
BisI GCNGC 7 cut(s) 334, 409, 467, 723, 1078, 1239, 1389
BlsI GCNGC 7 cut(s) 335, 410, 468, 724, 1079, 1240, 1390
Bme1390I CCNGG 3 cut(s) 539, 810, 1415
Bme18I GGWCC 2 cut(s) 133, 941
BmgT120I GGNCC 3 cut(s) 133, 870, 941
BmiI GGNNCC 5 cut(s) 135, 436, 547, 742, 1203
BmrFI CCNGG 3 cut(s) 539, 810, 1415
BmrI ACTGGG 1 cut(s) 1024
BmsI GCATC 4 cut(s) 580, 637, 1147, 1348
BmuI ACTGGG 1 cut(s) 1024
BpiI GAAGAC 2 cut(s) 261, 1086
BplI GAGNNNNNCTC 4 cut(s) 662, 694, 701, 733
BpmI CTGGAG 1 cut(s) 1024
BsaAI YACGTR 1 cut(s) 1425
BsaBI GATNNNNATC 1 cut(s) 1362
BsaI GGTCTC 1 cut(s) 1412
BsaJI CCNNGG 4 cut(s) 205, 537, 538, 1137
BsaXI ACNNNNNCTCC 1 cut(s) 1409
Bsc4I CCNNNNNNNGG 5 cut(s) 265, 887, 1014, 1047, 1234
Bse1I ACTGG 3 cut(s) 530, 718, 1019
Bse3DI GCAATG 1 cut(s) 768
Bse8I GATNNNNATC 1 cut(s) 1362
BseBI CCWGG 3 cut(s) 539, 810, 1415
BseDI CCNNGG 4 cut(s) 205, 537, 538, 1137
BseGI GGATG 1 cut(s) 1118
BseJI GATNNNNATC 1 cut(s) 1362
BseLI CCNNNNNNNGG 5 cut(s) 265, 887, 1014, 1047, 1234
BseMI GCAATG 1 cut(s) 768
BseMII CTCAG 4 cut(s) 313, 657, 699, 1070
BseNI ACTGG 3 cut(s) 530, 718, 1019
BseXI GCAGC 6 cut(s) 320, 395, 734, 1089, 1225, 1400
BseYI CCCAGC 2 cut(s) 428, 1032
BsgI GTGCAG 1 cut(s) 139
BshFI GGCC 3 cut(s) 210, 564, 872
BshNI GGYRCC 2 cut(s) 545, 1201
BslFI GGGAC 2 cut(s) 525, 1049
BslI CCNNNNNNNGG 5 cut(s) 265, 887, 1014, 1047, 1234
BsmAI GTCTC 6 cut(s) 300, 385, 646, 665, 704, 1412
BsmFI GGGAC 2 cut(s) 525, 1049
BsmI GAATGC 2 cut(s) 481, 526
BsnI GGCC 3 cut(s) 210, 564, 872
Bso31I GGTCTC 1 cut(s) 1412
Bsp1407I TGTACA 1 cut(s) 1165
Bsp143I GATC 5 cut(s) 16, 244, 905, 1067, 1363
BspACI CCGC 4 cut(s) 50, 81, 466, 1110
BspANI GGCC 3 cut(s) 210, 564, 872
BspCNI CTCAG 4 cut(s) 312, 656, 700, 1069
BspLI GGNNCC 5 cut(s) 135, 436, 547, 742, 1203
BspMAI CTGCAG 1 cut(s) 724
BspPI GGATC 3 cut(s) 11, 913, 1075
BspQI GCTCTTC 1 cut(s) 38
BspT107I GGYRCC 2 cut(s) 545, 1201
BspTI CTTAAG 1 cut(s) 631
BspTNI GGTCTC 1 cut(s) 1412
BsrBI CCGCTC 1 cut(s) 52
BsrDI GCAATG 1 cut(s) 768
BsrGI TGTACA 1 cut(s) 1165
BsrI ACTGG 3 cut(s) 530, 718, 1019
BssECI CCNNGG 4 cut(s) 205, 537, 538, 1137
BssMI GATC 5 cut(s) 16, 244, 905, 1067, 1363
BssNAI GTATAC 1 cut(s) 840
BssT1I CCWWGG 2 cut(s) 205, 1137
Bst1107I GTATAC 1 cut(s) 840
Bst2UI CCWGG 3 cut(s) 539, 810, 1415
Bst4CI ACNGT 3 cut(s) 377, 961, 1191
Bst6I CTCTTC 2 cut(s) 38, 1227
BstAFI CTTAAG 1 cut(s) 631
BstAPI GCANNNNNTGC 2 cut(s) 408, 1157
BstAUI TGTACA 1 cut(s) 1165
BstBAI YACGTR 1 cut(s) 1425
BstC8I GCNNGC 2 cut(s) 158, 1075
BstDEI CTNAG 5 cut(s) 299, 343, 643, 708, 1056
BstF5I GGATG 1 cut(s) 1118
BstHHI GCGC 2 cut(s) 471, 652
BstKTI GATC 5 cut(s) 19, 247, 908, 1070, 1366
BstMAI GTCTC 6 cut(s) 300, 385, 646, 665, 704, 1412
BstMBI GATC 5 cut(s) 16, 244, 905, 1067, 1363
BstMWI GCNNNNNNNGC 5 cut(s) 333, 339, 408, 1157, 1385
BstNI CCWGG 3 cut(s) 539, 810, 1415
BstNSI RCATGY 1 cut(s) 1027
BstSCI CCNGG 3 cut(s) 537, 808, 1413
BstSFI CTRYAG 3 cut(s) 141, 666, 720
BstV1I GCAGC 6 cut(s) 320, 395, 734, 1089, 1225, 1400
BstV2I GAAGAC 2 cut(s) 261, 1086
BstX2I RGATCY 3 cut(s) 16, 905, 1067
BstYI RGATCY 3 cut(s) 16, 905, 1067
BstZ17I GTATAC 1 cut(s) 840
BsuRI GGCC 3 cut(s) 210, 564, 872
BtgZI GCGATG 1 cut(s) 747
BtsCI GGATG 1 cut(s) 1118
BtsI GCAGTG 1 cut(s) 753
BtsIMutI CAGTG 3 cut(s) 382, 753, 1196
Cac8I GCNNGC 2 cut(s) 158, 1075
CaiI CAGNNNCTG 2 cut(s) 674, 755
CfoI GCGC 2 cut(s) 471, 652
Cfr13I GGNCC 3 cut(s) 133, 870, 941
Csp6I GTAC 6 cut(s) 459, 527, 975, 1012, 1166, 1202
CviAII CATG 4 cut(s) 218, 935, 1024, 1169
CviQI GTAC 6 cut(s) 459, 527, 975, 1012, 1166, 1202
DdeI CTNAG 5 cut(s) 299, 343, 643, 708, 1056
DpnI GATC 5 cut(s) 18, 246, 907, 1069, 1365
DpnII GATC 5 cut(s) 16, 244, 905, 1067, 1363
DraI TTTAAA 1 cut(s) 1315
DraIII CACNNNGTG 1 cut(s) 584
EaeI YGGCCR 1 cut(s) 562
Eam1104I CTCTTC 2 cut(s) 38, 1227
EarI CTCTTC 2 cut(s) 38, 1227
EciI GGCGGA 1 cut(s) 70
Eco130I CCWWGG 2 cut(s) 205, 1137
Eco147I AGGCCT 1 cut(s) 210
Eco31I GGTCTC 1 cut(s) 1412
Eco47I GGWCC 2 cut(s) 133, 941
Eco57I CTGAAG 1 cut(s) 47
EcoO109I RGGNCCY 2 cut(s) 133, 941
EcoRI GAATTC 1 cut(s) 1051
EcoRII CCWGG 3 cut(s) 537, 808, 1413
EcoT14I CCWWGG 2 cut(s) 205, 1137
ErhI CCWWGG 2 cut(s) 205, 1137
FaeI CATG 4 cut(s) 221, 938, 1027, 1172
FalI AAGNNNNNCTT 2 cut(s) 614, 646
FaqI GGGAC 2 cut(s) 525, 1049
FatI CATG 4 cut(s) 217, 934, 1023, 1168
FauNDI CATATG 1 cut(s) 834
FbaI TGATCA 1 cut(s) 244
FblI GTMKAC 2 cut(s) 839, 1259
Fnu4HI GCNGC 7 cut(s) 334, 409, 467, 723, 1078, 1239, 1389
FokI GGATG 1 cut(s) 1125
Fsp4HI GCNGC 7 cut(s) 334, 409, 467, 723, 1078, 1239, 1389
FspBI CTAG 5 cut(s) 179, 455, 462, 828, 966
GlaI GCGC 2 cut(s) 470, 651
GluI GCNGC 7 cut(s) 334, 409, 467, 723, 1078, 1239, 1389
GsaI CCCAGC 2 cut(s) 432, 1036
GsuI CTGGAG 1 cut(s) 1024
HaeIII GGCC 3 cut(s) 210, 564, 872
HhaI GCGC 2 cut(s) 471, 652
Hin1II CATG 4 cut(s) 221, 938, 1027, 1172
Hin6I GCGC 2 cut(s) 469, 650
HinP1I GCGC 2 cut(s) 469, 650
HindIII AAGCTT 2 cut(s) 340, 1317
HinfI GANTC 5 cut(s) 67, 662, 824, 877, 1037
HphI GGTGA 4 cut(s) 125, 242, 526, 570
Hpy166II GTNNAC 4 cut(s) 382, 587, 840, 1260
Hpy188III TCNNGA 3 cut(s) 37, 71, 1041
Hpy8I GTNNAC 4 cut(s) 382, 587, 840, 1260
HpyAV CCTTC 6 cut(s) 147, 616, 620, 939, 1014, 1420
HpyCH4III ACNGT 3 cut(s) 377, 961, 1191
HpyCH4IV ACGT 2 cut(s) 555, 1424
HpyCH4V TGCA 9 cut(s) 156, 336, 402, 524, 722, 847, 1151, 1160, 1241
HpyF10VI GCNNNNNNNGC 5 cut(s) 333, 339, 408, 1157, 1385
HpyF3I CTNAG 5 cut(s) 299, 343, 643, 708, 1056
HpySE526I ACGT 2 cut(s) 555, 1424
Hsp92II CATG 4 cut(s) 221, 938, 1027, 1172
HspAI GCGC 2 cut(s) 469, 650
KpnI GGTACC 1 cut(s) 1205
Ksp22I TGATCA 1 cut(s) 244
Kzo9I GATC 5 cut(s) 16, 244, 905, 1067, 1363
LguI GCTCTTC 1 cut(s) 38
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 6 cut(s) 320, 395, 734, 1089, 1225, 1400
LweI GCATC 4 cut(s) 580, 637, 1147, 1348
MaeI CTAG 5 cut(s) 179, 455, 462, 828, 966
MaeII ACGT 2 cut(s) 555, 1424
MaeIII GTNAC 4 cut(s) 532, 955, 1019, 1083
MalI GATC 5 cut(s) 18, 246, 907, 1069, 1365
MbiI CCGCTC 1 cut(s) 52
MboI GATC 5 cut(s) 16, 244, 905, 1067, 1363
MboII GAAGA 8 cut(s) 25, 162, 266, 311, 480, 1086, 1184, 1244
MflI RGATCY 3 cut(s) 16, 905, 1067
MlsI TGGCCA 1 cut(s) 564
MluCI AATT 5 cut(s) 238, 370, 703, 1051, 1218
MluNI TGGCCA 1 cut(s) 564
MlyI GAGTC 2 cut(s) 871, 1031
MmeI TCCRAC 1 cut(s) 1045
Mox20I TGGCCA 1 cut(s) 564
MscI TGGCCA 1 cut(s) 564
MseI TTAA 5 cut(s) 27, 237, 552, 632, 1314
MslI CAYNNNNRTG 3 cut(s) 222, 896, 1173
Msp20I TGGCCA 1 cut(s) 564
MspA1I CMGCKG 3 cut(s) 725, 1060, 1110
MspCI CTTAAG 1 cut(s) 631
MspR9I CCNGG 3 cut(s) 539, 810, 1415
Mva1269I GAATGC 2 cut(s) 481, 526
MvaI CCWGG 3 cut(s) 539, 810, 1415
MwoI GCNNNNNNNGC 5 cut(s) 333, 339, 408, 1157, 1385
NdeI CATATG 1 cut(s) 834
NdeII GATC 5 cut(s) 16, 244, 905, 1067, 1363
NlaIII CATG 4 cut(s) 221, 938, 1027, 1172
NlaIV GGNNCC 5 cut(s) 135, 436, 547, 742, 1203
NmeAIII GCCGAG 1 cut(s) 1109
NmuCI GTSAC 2 cut(s) 532, 1083
NspI RCATGY 1 cut(s) 1027
PasI CCCWGGG 1 cut(s) 538
PceI AGGCCT 1 cut(s) 210
PciSI GCTCTTC 1 cut(s) 38
PctI GAATGC 2 cut(s) 481, 526
PfeI GAWTC 3 cut(s) 67, 662, 824
PflMI CCANNNNNTGG 2 cut(s) 265, 1047
PfoI TCCNGGA 1 cut(s) 1413
PkrI GCNGC 7 cut(s) 335, 410, 468, 724, 1079, 1240, 1390
PleI GAGTC 2 cut(s) 871, 1031
PpsI GAGTC 2 cut(s) 871, 1031
Ppu21I YACGTR 1 cut(s) 1425
PpuMI RGGWCCY 2 cut(s) 133, 941
Psp1406I AACGTT 1 cut(s) 555
Psp5II RGGWCCY 2 cut(s) 133, 941
Psp6I CCWGG 3 cut(s) 537, 808, 1413
PspFI CCCAGC 2 cut(s) 428, 1032
PspGI CCWGG 3 cut(s) 537, 808, 1413
PspN4I GGNNCC 5 cut(s) 135, 436, 547, 742, 1203
PspPI GGNCC 3 cut(s) 133, 870, 941
PspPPI RGGWCCY 2 cut(s) 133, 941
PstI CTGCAG 1 cut(s) 724
PstNI CAGNNNCTG 2 cut(s) 674, 755
PsuI RGATCY 3 cut(s) 16, 905, 1067
PvuII CAGCTG 2 cut(s) 725, 1060
RsaI GTAC 6 cut(s) 460, 528, 976, 1013, 1167, 1203
RsaNI GTAC 6 cut(s) 459, 527, 975, 1012, 1166, 1202
RseI CAYNNNNRTG 3 cut(s) 222, 896, 1173
SapI GCTCTTC 1 cut(s) 38
SaqAI TTAA 5 cut(s) 27, 237, 552, 632, 1314
SatI GCNGC 7 cut(s) 334, 409, 467, 723, 1078, 1239, 1389
Sau3AI GATC 5 cut(s) 16, 244, 905, 1067, 1363
Sau96I GGNCC 3 cut(s) 133, 870, 941
SchI GAGTC 2 cut(s) 871, 1031
ScrFI CCNGG 3 cut(s) 539, 810, 1415
SfaNI GCATC 4 cut(s) 580, 637, 1147, 1348
SfcI CTRYAG 3 cut(s) 141, 666, 720
SinI GGWCC 2 cut(s) 133, 941
SmiMI CAYNNNNRTG 3 cut(s) 222, 896, 1173
SmlI CTYRAG 1 cut(s) 631
SmoI CTYRAG 1 cut(s) 631
Sse9I AATT 5 cut(s) 238, 370, 703, 1051, 1218
SseBI AGGCCT 1 cut(s) 210
SsiI CCGC 4 cut(s) 50, 81, 466, 1110
SspI AATATT 1 cut(s) 851
SspMI CTAG 5 cut(s) 179, 455, 462, 828, 966
StuI AGGCCT 1 cut(s) 210
StyD4I CCNGG 3 cut(s) 537, 808, 1413
StyI CCWWGG 2 cut(s) 205, 1137
TaaI ACNGT 3 cut(s) 377, 961, 1191
TaiI ACGT 2 cut(s) 558, 1427
TaqI TCGA 2 cut(s) 680, 1366
TasI AATT 5 cut(s) 238, 370, 703, 1051, 1218
TatI WGTACW 3 cut(s) 974, 1011, 1165
TauI GCSGC 1 cut(s) 469
TfiI GAWTC 3 cut(s) 67, 662, 824
Tru1I TTAA 5 cut(s) 27, 237, 552, 632, 1314
Tru9I TTAA 5 cut(s) 27, 237, 552, 632, 1314
TscAI CASTG 3 cut(s) 382, 760, 1196
TseFI GTSAC 2 cut(s) 532, 1083
TseI GCWGC 6 cut(s) 333, 408, 722, 1077, 1238, 1388
Tsp45I GTSAC 2 cut(s) 532, 1083
TspDTI ATGAA 5 cut(s) 474, 635, 806, 1185, 1302
TspRI CASTG 3 cut(s) 382, 760, 1196
Van91I CCANNNNNTGG 2 cut(s) 265, 1047
Vha464I CTTAAG 1 cut(s) 631
VpaK11BI GGWCC 2 cut(s) 133, 941
XapI RAATTY 2 cut(s) 703, 1051
XceI RCATGY 1 cut(s) 1027
XmiI GTMKAC 2 cut(s) 839, 1259
XspI CTAG 5 cut(s) 179, 455, 462, 828, 966
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.