Prupe.2G063800_v2.0.a1

Cyclic dof factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0024481
Physical Location & Seq
Forward (+)
8561919 .. 8563066
1148 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G063800.1

Sequence Viewer

Length: 609 bp
ATGCATGGGGGGCCTTCTGTGAAAGTATCCTGCAAGCAAGATCAATTTTTCGAACTAGATAAAGTCAGTGAAAACAATCACCATGGTCAAATCTTGGAGAATGAGGGTGAAGTTGATTGTAATCCAGAAGAAGACTGCATTGCTAGTGATACTGATGATGGCAAAGAAAAGGCTTTCACAAAGCCAGACAAGGTTCTTCCTTGCCCTCGCTGCAACAGCTTAAAAACAAAGTTTTACTGTTTTAATAATTATAGTGTATACCAACCGAGGCACTTTTGCAAGAGCTGCCGAAGATATTGGACAGCCGGGGGAACAATAAGAAATCTTCCTTTAGGGACTAGGCGGCACAGGAATAAGCATTCATCTTCTCAGTATCATCAAGTTGTGGGCGAACCGAGTGCAGTACCAGTCACCCAAGGAGACACCCTTAACTTTGTTGGCCAACAGCATCTATCGCCTGTTCAACTTCCTGCCTTTCCAAAACCTGTCAATGGGATGAGGGAAGTATTTATAGTAGCCTTTGGAGAGGTTGGTGGGGTTGGTGTAGTTGGTGTAGTTGGTGTGGTTGGTGTGGTTGGTGGGGTTGGTGCATTTAGGGATTATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-Dof

Protein Analysis

203

Amino Acids

22.17

Weight (kDa)

7.61

Isoelectric Point (pI)

35.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024481)

Species Orthologous Gene IDs
malus_domestica MD07G1057700.v1.1
prunus_persica Prupe.2G063800_v2.0.a1
pyrus_communis pycom07g04390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 258
AciI CCGC 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 439
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 1 cut(s) 491
AgsI TTSAA 1 cut(s) 464
AluBI AGCT 2 cut(s) 219, 285
AluI AGCT 2 cut(s) 219, 285
Alw26I GTCTC 1 cut(s) 414
AoxI GGCC 2 cut(s) 11, 439
ApeKI GCWGC 2 cut(s) 210, 285
AspS9I GGNCC 1 cut(s) 11
AsuC2I CCSGG 1 cut(s) 307
AsuHPI GGTGA 3 cut(s) 71, 119, 403
AsuII TTCGAA 1 cut(s) 51
BalI TGGCCA 1 cut(s) 441
BbsI GAAGAC 1 cut(s) 138
BbvI GCAGC 2 cut(s) 197, 272
BccI CCATC 1 cut(s) 152
BcgI CGANNNNNNTGC 2 cut(s) 380, 414
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 307
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 3 cut(s) 56, 144, 339
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 3 cut(s) 211, 286, 344
BlsI GCNGC 3 cut(s) 212, 287, 345
Bme1390I CCNGG 1 cut(s) 307
BmgT120I GGNCC 1 cut(s) 11
BmiI GGNNCC 1 cut(s) 12
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 457
BpiI GAAGAC 1 cut(s) 138
Bpu14I TTCGAA 1 cut(s) 51
BpuMI CCSGG 1 cut(s) 307
BsaBI GATNNNNATC 1 cut(s) 120
BsaJI CCNNGG 4 cut(s) 82, 266, 306, 415
Bsc4I CCNNNNNNNGG 1 cut(s) 491
Bse1I ACTGG 1 cut(s) 407
Bse3DI GCAATG 1 cut(s) 138
Bse8I GATNNNNATC 1 cut(s) 120
BseDI CCNNGG 4 cut(s) 82, 266, 306, 415
BseGI GGATG 1 cut(s) 501
BseJI GATNNNNATC 1 cut(s) 120
BseLI CCNNNNNNNGG 1 cut(s) 491
BseMI GCAATG 1 cut(s) 138
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 407
BseXI GCAGC 2 cut(s) 197, 272
BsgI GTGCAG 1 cut(s) 420
BshFI GGCC 2 cut(s) 13, 441
BsiSI CCGG 1 cut(s) 306
BslFI GGGAC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 491
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 1 cut(s) 349
BsmI GAATGC 1 cut(s) 358
BsnI GGCC 2 cut(s) 13, 441
Bsp119I TTCGAA 1 cut(s) 51
Bsp143I GATC 1 cut(s) 40
Bsp19I CCATGG 1 cut(s) 82
BspACI CCGC 1 cut(s) 343
BspANI GGCC 2 cut(s) 13, 441
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 1 cut(s) 12
BspT104I TTCGAA 1 cut(s) 51
BsrDI GCAATG 1 cut(s) 138
BsrI ACTGG 1 cut(s) 407
BssECI CCNNGG 4 cut(s) 82, 266, 306, 415
BssMI GATC 1 cut(s) 40
BssNAI GTATAC 1 cut(s) 259
BssT1I CCWWGG 2 cut(s) 82, 415
Bst1107I GTATAC 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 239
BstAPI GCANNNNNTGC 1 cut(s) 285
BstBI TTCGAA 1 cut(s) 51
BstC8I GCNNGC 1 cut(s) 35
BstDEI CTNAG 1 cut(s) 369
BstDSI CCRYGG 1 cut(s) 82
BstF5I GGATG 1 cut(s) 501
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 1 cut(s) 40
BstMWI GCNNNNNNNGC 5 cut(s) 10, 210, 216, 285, 454
BstSCI CCNGG 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 197, 272
BstV2I GAAGAC 1 cut(s) 138
BstZ17I GTATAC 1 cut(s) 259
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 13, 441
BtgI CCRYGG 1 cut(s) 82
BtsCI GGATG 1 cut(s) 501
BtsIMutI CAGTG 1 cut(s) 73
Cac8I GCNNGC 1 cut(s) 35
Cfr13I GGNCC 1 cut(s) 11
Csp6I GTAC 1 cut(s) 404
CviAII CATG 2 cut(s) 5, 83
CviJI RGCY 8 cut(s) 13, 173, 184, 219, 285, 305, 441, 518
CviKI_1 RGCY 8 cut(s) 13, 173, 184, 219, 285, 305, 441, 518
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 1 cut(s) 369
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 1 cut(s) 439
Eco130I CCWWGG 2 cut(s) 82, 415
EcoO109I RGGNCCY 1 cut(s) 11
EcoT14I CCWWGG 2 cut(s) 82, 415
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 82, 415
FaeI CATG 2 cut(s) 8, 86
FaiI YATR 6 cut(s) 6, 84, 252, 259, 512, 603
FaqI GGGAC 1 cut(s) 349
FatI CATG 2 cut(s) 4, 82
FblI GTMKAC 1 cut(s) 258
Fnu4HI GCNGC 3 cut(s) 211, 286, 344
FokI GGATG 1 cut(s) 508
Fsp4HI GCNGC 3 cut(s) 211, 286, 344
FspBI CTAG 3 cut(s) 56, 144, 339
GluI GCNGC 3 cut(s) 211, 286, 344
HaeIII GGCC 2 cut(s) 13, 441
HapII CCGG 1 cut(s) 306
Hin1II CATG 2 cut(s) 8, 86
HpaII CCGG 1 cut(s) 306
HphI GGTGA 3 cut(s) 71, 119, 403
Hpy166II GTNNAC 1 cut(s) 259
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 1 cut(s) 24
HpyCH4III ACNGT 1 cut(s) 239
HpyCH4V TGCA 7 cut(s) 4, 33, 138, 213, 279, 401, 590
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 210, 216, 285, 454
HpyF3I CTNAG 1 cut(s) 369
Hsp92II CATG 2 cut(s) 8, 86
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 9 cut(s) 43, 138, 198, 319, 334, 420, 471, 483, 498
Lsp1109I GCAGC 2 cut(s) 197, 272
LweI GCATC 1 cut(s) 457
MaeI CTAG 3 cut(s) 56, 144, 339
MaeIII GTNAC 1 cut(s) 409
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 6 cut(s) 140, 143, 188, 303, 317, 357
MlsI TGGCCA 1 cut(s) 441
MluCI AATT 2 cut(s) 44, 247
MluNI TGGCCA 1 cut(s) 441
MnlI CCTC 5 cut(s) 97, 216, 261, 492, 520
Mox20I TGGCCA 1 cut(s) 441
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 441
MseI TTAA 3 cut(s) 221, 243, 429
Msp20I TGGCCA 1 cut(s) 441
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 358
MwoI GCNNNNNNNGC 5 cut(s) 10, 210, 216, 285, 454
NciI CCSGG 1 cut(s) 307
NcoI CCATGG 1 cut(s) 82
NdeII GATC 1 cut(s) 40
NlaIII CATG 2 cut(s) 8, 86
NlaIV GGNNCC 1 cut(s) 12
NmuCI GTSAC 1 cut(s) 409
NsiI ATGCAT 1 cut(s) 6
NspV TTCGAA 1 cut(s) 51
PctI GAATGC 1 cut(s) 358
PkrI GCNGC 3 cut(s) 212, 287, 345
PspN4I GGNNCC 1 cut(s) 12
PspPI GGNCC 1 cut(s) 11
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
SaqAI TTAA 3 cut(s) 221, 243, 429
SatI GCNGC 3 cut(s) 211, 286, 344
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 11
ScrFI CCNGG 1 cut(s) 307
SetI ASST 5 cut(s) 195, 221, 287, 487, 531
SfaNI GCATC 1 cut(s) 457
SfuI TTCGAA 1 cut(s) 51
Sse9I AATT 2 cut(s) 44, 247
SsiI CCGC 1 cut(s) 343
SspMI CTAG 3 cut(s) 56, 144, 339
StyD4I CCNGG 1 cut(s) 305
StyI CCWWGG 2 cut(s) 82, 415
TaaI ACNGT 1 cut(s) 239
TaqI TCGA 1 cut(s) 51
TasI AATT 2 cut(s) 44, 247
TauI GCSGC 1 cut(s) 346
Tru1I TTAA 3 cut(s) 221, 243, 429
Tru9I TTAA 3 cut(s) 221, 243, 429
TscAI CASTG 1 cut(s) 73
TseFI GTSAC 1 cut(s) 409
TseI GCWGC 2 cut(s) 210, 285
Tsp45I GTSAC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 351
TspRI CASTG 1 cut(s) 73
XmiI GTMKAC 1 cut(s) 258
XspI CTAG 3 cut(s) 56, 144, 339
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.