Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028857

Physical Location & Seq

Genomic Coordinates Forward (+)

10459358 .. 10460801

Gene Structure 1444 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1095800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGTCCTTGGTGAAGAGAAGGCCTAATGACCATACAATTGCTCAGATTAAGGATGCTGTTCGTGATGGCCTGAGGGCAGTGAAAAACACAGTTGAAGATGAAGCTGTCATCTTAGGTGCTGGAGCTTTTGAAGTTGCAGCCAGACAATATTTAGTGAATGAAGTAAAGAAAACTGTTAAAGGGCGTGCTCAACTCGGTGTCGAAGCTTTTGCTGATGCTCTTCTTGTGGTGCCCAAAACACTTGCTGAGAATTCTGGCCTCGATACACAAGATGTGATAATTGCTCTTACGGGAGAGCATGATCAGGGAAATGTCGTGGGACTAAATCACAACACTGGAGAACCGCTTGATCCACAGATGGAGGGTATCTTCGACAACTACTCTGTGAAGCGACAGATTATAAACTCAGGGCCTGTAATTGCATCTCAACTGTTGTTGGTCGATGAAGTAATTCGTGCTGGGCGTAACATGCGGAAGCCAACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

162

Amino Acids

17.45

Weight (kDa)

5.92

Isoelectric Point (pI)

24.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	6 - 154	7.6e-46	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0028857)

Species	Orthologous Gene IDs
malus_domestica	MD07G1095800.v1.1
rosa_samantha	Rh6BG178400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	401
AccB1I	GGYRCC	1 cut(s)	229
AciI	CCGC	2 cut(s)	344, 472
AclWI	GGATC	1 cut(s)	344
AcsI	RAATTY	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	95, 131
AluBI	AGCT	3 cut(s)	104, 125, 206
AluI	AGCT	3 cut(s)	104, 125, 206
Alw21I	GWGCWC	1 cut(s)	190
AlwI	GGATC	1 cut(s)	344
AlwNI	CAGNNNCTG	1 cut(s)	413
AoxI	GGCC	4 cut(s)	20, 67, 256, 410
ApeKI	GCWGC	1 cut(s)	137
ApoI	RAATTY	1 cut(s)	250
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	22
AxyI	CCTNAGG	1 cut(s)	71
BaeGI	GKGCMC	1 cut(s)	234
BanI	GGYRCC	1 cut(s)	229
Bbv12I	GWGCWC	1 cut(s)	190
BbvI	GCAGC	1 cut(s)	149
BccI	CCATC	2 cut(s)	59, 352
BcgI	CGANNNNNNTGC	2 cut(s)	191, 225
BclI	TGATCA	1 cut(s)	301
BisI	GCNGC	1 cut(s)	138
BlsI	GCNGC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	231
BmsI	GCATC	3 cut(s)	43, 205, 431
BpmI	CTGGAG	2 cut(s)	141, 357
BsaJI	CCNNGG	1 cut(s)	6
Bse1I	ACTGG	1 cut(s)	340
Bse21I	CCTNAGG	1 cut(s)	71
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	1 cut(s)	58
BseMII	CTCAG	4 cut(s)	56, 62, 237, 420
BseNI	ACTGG	1 cut(s)	340
BseSI	GKGCMC	1 cut(s)	234
BseXI	GCAGC	1 cut(s)	149
BseYI	CCCAGC	1 cut(s)	458
BshFI	GGCC	4 cut(s)	22, 69, 258, 412
BshNI	GGYRCC	1 cut(s)	229
BsiHKAI	GWGCWC	1 cut(s)	190
BslFI	GGGAC	1 cut(s)	333
BsmFI	GGGAC	1 cut(s)	333
BsnI	GGCC	4 cut(s)	22, 69, 258, 412
Bsp1286I	GDGCHC	2 cut(s)	190, 234
Bsp143I	GATC	2 cut(s)	301, 349
BspACI	CCGC	2 cut(s)	344, 472
BspANI	GGCC	4 cut(s)	22, 69, 258, 412
BspCNI	CTCAG	4 cut(s)	55, 63, 238, 419
BspLI	GGNNCC	1 cut(s)	231
BspPI	GGATC	1 cut(s)	344
BspQI	GCTCTTC	1 cut(s)	225
BspT107I	GGYRCC	1 cut(s)	229
BsrI	ACTGG	1 cut(s)	340
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	2 cut(s)	301, 349
BssT1I	CCWWGG	1 cut(s)	6
Bst4CI	ACNGT	3 cut(s)	91, 175, 432
Bst6I	CTCTTC	2 cut(s)	8, 225
BstC8I	GCNNGC	1 cut(s)	186
BstDEI	CTNAG	5 cut(s)	42, 71, 112, 246, 406
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	2 cut(s)	304, 352
BstMBI	GATC	2 cut(s)	301, 349
BstMWI	GCNNNNNNNGC	1 cut(s)	469
BstNSI	RCATGY	1 cut(s)	472
BstSLI	GKGCMC	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	149
Bsu36I	CCTNAGG	1 cut(s)	71
BsuRI	GGCC	4 cut(s)	22, 69, 258, 412
BtsCI	GGATG	1 cut(s)	58
BtsI	GCAGTG	1 cut(s)	84
BtsIMutI	CAGTG	2 cut(s)	84, 333
Cac8I	GCNNGC	1 cut(s)	186
CaiI	CAGNNNCTG	1 cut(s)	413
Cfr13I	GGNCC	1 cut(s)	410
CviAII	CATG	2 cut(s)	299, 469
CviJI	RGCY	9 cut(s)	22, 69, 104, 125, 140, 206, 258, 412, 478
CviKI_1	RGCY	9 cut(s)	22, 69, 104, 125, 140, 206, 258, 412, 478
DdeI	CTNAG	5 cut(s)	42, 71, 112, 246, 406
DpnI	GATC	2 cut(s)	303, 351
DpnII	GATC	2 cut(s)	301, 349
Eam1104I	CTCTTC	2 cut(s)	8, 225
EarI	CTCTTC	2 cut(s)	8, 225
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	22
Eco81I	CCTNAGG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	410
EcoRI	GAATTC	1 cut(s)	250
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	302, 472
FaiI	YATR	4 cut(s)	33, 300, 401, 470
FaqI	GGGAC	1 cut(s)	333
FatI	CATG	2 cut(s)	298, 468
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	1 cut(s)	138
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	138
GluI	GCNGC	1 cut(s)	138
GsaI	CCCAGC	1 cut(s)	462
GsuI	CTGGAG	2 cut(s)	141, 357
HaeIII	GGCC	4 cut(s)	22, 69, 258, 412
Hin1II	CATG	2 cut(s)	302, 472
HindIII	AAGCTT	1 cut(s)	204
HphI	GGTGA	1 cut(s)	22
Hpy188I	TCNGA	1 cut(s)	45
Hpy188III	TCNNGA	1 cut(s)	62
HpyAV	CCTTC	1 cut(s)	12
HpyCH4III	ACNGT	3 cut(s)	91, 175, 432
HpyCH4V	TGCA	2 cut(s)	137, 422
HpyF10VI	GCNNNNNNNGC	1 cut(s)	469
HpyF3I	CTNAG	5 cut(s)	42, 71, 112, 246, 406
Hsp92II	CATG	2 cut(s)	302, 472
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	301, 349
LguI	GCTCTTC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	122
LpnPI	CCDG	9 cut(s)	83, 105, 154, 240, 290, 321, 393, 426, 444
Lsp1109I	GCAGC	1 cut(s)	149
LweI	GCATC	3 cut(s)	43, 205, 431
MaeIII	GTNAC	1 cut(s)	464
MalI	GATC	2 cut(s)	303, 351
MboI	GATC	2 cut(s)	301, 349
MboII	GAAGA	4 cut(s)	25, 107, 212, 361
MfeI	CAATTG	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	190, 234
MluCI	AATT	5 cut(s)	36, 250, 279, 417, 450
MnlI	CCTC	3 cut(s)	66, 269, 355
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	2 cut(s)	48, 177
MunI	CAATTG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	469
NdeII	GATC	2 cut(s)	301, 349
NlaIII	CATG	2 cut(s)	302, 472
NlaIV	GGNNCC	1 cut(s)	231
NspI	RCATGY	1 cut(s)	472
PceI	AGGCCT	1 cut(s)	22
PciSI	GCTCTTC	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	460
PdmI	GAANNNNTTC	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	139
PsiI	TTATAA	1 cut(s)	401
PspFI	CCCAGC	1 cut(s)	458
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	1 cut(s)	410
PstNI	CAGNNNCTG	1 cut(s)	413
SapI	GCTCTTC	1 cut(s)	225
SaqAI	TTAA	2 cut(s)	48, 177
SatI	GCNGC	1 cut(s)	138
Sau3AI	GATC	2 cut(s)	301, 349
Sau96I	GGNCC	1 cut(s)	410
SduI	GDGCHC	2 cut(s)	190, 234
SetI	ASST	5 cut(s)	106, 118, 127, 208, 485
SfaNI	GCATC	3 cut(s)	43, 205, 431
Sse9I	AATT	5 cut(s)	36, 250, 279, 417, 450
SseBI	AGGCCT	1 cut(s)	22
SsiI	CCGC	2 cut(s)	344, 472
SspI	AATATT	1 cut(s)	149
StuI	AGGCCT	1 cut(s)	22
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	3 cut(s)	91, 175, 432
TaqI	TCGA	4 cut(s)	201, 261, 372, 441
TasI	AATT	5 cut(s)	36, 250, 279, 417, 450
Tru1I	TTAA	2 cut(s)	48, 177
Tru9I	TTAA	2 cut(s)	48, 177
TscAI	CASTG	2 cut(s)	84, 340
TseI	GCWGC	1 cut(s)	137
TspDTI	ATGAA	3 cut(s)	114, 174, 459
TspRI	CASTG	2 cut(s)	84, 340
XapI	RAATTY	1 cut(s)	250
XceI	RCATGY	1 cut(s)	472
XmnI	GAANNNNTTC	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.