Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0028857

Physical Location & Seq

Genomic Coordinates Reverse (-)

30609389 .. 30613951

Gene Structure 4563 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG178400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGTCTGTGCGAGTGCTGAACCCTAATGCGGAGGTGCTGAACAAGTCGGCGGCCCTGCACATGAACATCAACGCCGCCAAGGGCTTGCAGGATGTCCTCAAAACCAACCTCGGCCCCAAAGGCACCATCAAAATGCTCGTTGGTGGCTCTGGAGACATCAAGCTCACTAAAGATGGCAACACTCTCCTCAAAGAAATGCAGATTCAGAACCCCACAGCAATTATGATTGCCAGGACAGCTGTTGCCCAAGATGACATTAGCGGAGATGGCACCACCTCTACTGGTGCTGGAGCTTTTGAAGTTGCAGCCAGACAATATCTCATAAATGAAGTGAAGAAAACTGTTCAAGGGCGAGCTCAACTCGGTGTTGAAGCTTTTGCTGATGCTCTCCTTGTGGTGCCCAAGACACTTGCTGAGAATGCTGGCCTCGACACACAAGATGTGATAATTTCTCTCAAGGGAGAGCATGAGCGGGGAAACATTGTCGGACTAAATCATCACACTGGGGAACCCATTGACCCACAGATGGAGGGGATCTTCGACAACTACTCTGTGAAGCGGCAGATTATAAACTCAGGGCCTGTAATTACATCTCAATTGTTGTTGGTGGATGAAGTGATCCGTGCTGGGCGCAACATGAGGAAGCCAACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005832 GO:0006457 GO:0006458 GO:0008150 GO:0009987 GO:0010035 GO:0010038 GO:0010043 GO:0016020 GO:0032991 GO:0042221 GO:0044183 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:0051082 GO:0061077 GO:0101031

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cpn60_TCP1

Protein Analysis

217

Amino Acids

23.16

Weight (kDa)

6.92

Isoelectric Point (pI)

17.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cpn60_TCP1	PF00118	29 - 94	6.8e-23	TCP-1/cpn60 chaperonin family
Cpn60_TCP1	PF00118	94 - 210	2.9e-33	TCP-1/cpn60 chaperonin family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028857)

Species	Orthologous Gene IDs
malus_domestica	MD07G1095800.v1.1
rosa_samantha	Rh6BG178400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	569
AccB1I	GGYRCC	3 cut(s)	122, 269, 397
AccBSI	CCGCTC	1 cut(s)	472
AciI	CCGC	6 cut(s)	29, 50, 75, 261, 472, 559
AclWI	GGATC	2 cut(s)	542, 613
AfiI	CCNNNNNNNGG	2 cut(s)	28, 526
AgsI	TTSAA	3 cut(s)	299, 347, 371
AjnI	CCWGG	1 cut(s)	230
AluBI	AGCT	5 cut(s)	163, 239, 293, 356, 374
AluI	AGCT	5 cut(s)	163, 239, 293, 356, 374
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	1 cut(s)	147
AlwI	GGATC	2 cut(s)	542, 613
AlwNI	CAGNNNCTG	1 cut(s)	581
AoxI	GGCC	4 cut(s)	51, 112, 424, 578
ApeKI	GCWGC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	633
AspS9I	GGNCC	3 cut(s)	52, 113, 578
BaeGI	GKGCMC	1 cut(s)	402
BanI	GGYRCC	3 cut(s)	122, 269, 397
BanII	GRGCYC	1 cut(s)	358
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	317
BccI	CCATC	4 cut(s)	134, 167, 260, 520
BciT130I	CCWGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	147
BglI	GCCNNNNNGGC	1 cut(s)	120
BisI	GCNGC	4 cut(s)	51, 75, 306, 560
BlsI	GCNGC	4 cut(s)	52, 76, 307, 561
Bme1390I	CCNGG	1 cut(s)	232
BmgT120I	GGNCC	3 cut(s)	52, 113, 578
BmiI	GGNNCC	5 cut(s)	115, 124, 271, 399, 510
BmrFI	CCNGG	1 cut(s)	232
BmrI	ACTGGG	1 cut(s)	513
BmsI	GCATC	1 cut(s)	373
BmuI	ACTGGG	1 cut(s)	513
BplI	GAGNNNNNCTC	2 cut(s)	345, 377
BpmI	CTGGAG	2 cut(s)	171, 309
BpuEI	CTTGAG	1 cut(s)	440
BsaJI	CCNNGG	2 cut(s)	78, 109
Bsc4I	CCNNNNNNNGG	2 cut(s)	28, 526
Bse1I	ACTGG	2 cut(s)	286, 508
BseBI	CCWGG	1 cut(s)	232
BseDI	CCNNGG	2 cut(s)	78, 109
BseGI	GGATG	2 cut(s)	97, 616
BseLI	CCNNNNNNNGG	2 cut(s)	28, 526
BseMII	CTCAG	2 cut(s)	405, 588
BseNI	ACTGG	2 cut(s)	286, 508
BseRI	GAGGAG	1 cut(s)	176
BseSI	GKGCMC	1 cut(s)	402
BseXI	GCAGC	1 cut(s)	317
BseYI	CCCAGC	1 cut(s)	626
BsgI	GTGCAG	1 cut(s)	41
BshFI	GGCC	4 cut(s)	53, 114, 426, 580
BshNI	GGYRCC	3 cut(s)	122, 269, 397
BsiHKAI	GWGCWC	1 cut(s)	358
BslI	CCNNNNNNNGG	2 cut(s)	28, 526
BsmAI	GTCTC	1 cut(s)	147
BsmI	GAATGC	1 cut(s)	424
BsnI	GGCC	4 cut(s)	53, 114, 426, 580
Bsp1286I	GDGCHC	2 cut(s)	358, 402
Bsp143I	GATC	2 cut(s)	534, 618
BspACI	CCGC	6 cut(s)	29, 50, 75, 261, 472, 559
BspANI	GGCC	4 cut(s)	53, 114, 426, 580
BspCNI	CTCAG	2 cut(s)	406, 587
BspLI	GGNNCC	5 cut(s)	115, 124, 271, 399, 510
BspPI	GGATC	2 cut(s)	542, 613
BspT107I	GGYRCC	3 cut(s)	122, 269, 397
BsrBI	CCGCTC	1 cut(s)	472
BsrI	ACTGG	2 cut(s)	286, 508
BssECI	CCNNGG	2 cut(s)	78, 109
BssMI	GATC	2 cut(s)	534, 618
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	232
Bst4CI	ACNGT	1 cut(s)	343
BstC8I	GCNNGC	3 cut(s)	86, 354, 424
BstDEI	CTNAG	3 cut(s)	414, 574, 651
BstF5I	GGATG	2 cut(s)	97, 616
BstHHI	GCGC	1 cut(s)	633
BstKTI	GATC	2 cut(s)	537, 621
BstMAI	GTCTC	1 cut(s)	147
BstMBI	GATC	2 cut(s)	534, 618
BstMWI	GCNNNNNNNGC	4 cut(s)	120, 236, 267, 419
BstNI	CCWGG	1 cut(s)	232
BstSCI	CCNGG	1 cut(s)	230
BstSLI	GKGCMC	1 cut(s)	402
BstV1I	GCAGC	1 cut(s)	317
BstX2I	RGATCY	1 cut(s)	534
BstYI	RGATCY	1 cut(s)	534
BsuRI	GGCC	4 cut(s)	53, 114, 426, 580
BtsCI	GGATG	2 cut(s)	97, 616
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	3 cut(s)	86, 354, 424
CaiI	CAGNNNCTG	1 cut(s)	581
CfoI	GCGC	1 cut(s)	633
Cfr13I	GGNCC	3 cut(s)	52, 113, 578
CviAII	CATG	3 cut(s)	61, 467, 637
DdeI	CTNAG	3 cut(s)	414, 574, 651
DpnI	GATC	2 cut(s)	536, 620
DpnII	GATC	2 cut(s)	534, 618
Ecl136II	GAGCTC	1 cut(s)	356
Eco130I	CCWWGG	1 cut(s)	78
Eco24I	GRGCYC	1 cut(s)	358
Eco53kI	GAGCTC	1 cut(s)	356
EcoICRI	GAGCTC	1 cut(s)	356
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRII	CCWGG	1 cut(s)	230
EcoT14I	CCWWGG	1 cut(s)	78
EcoT38I	GRGCYC	1 cut(s)	358
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	3 cut(s)	64, 470, 640
FaiI	YATR	6 cut(s)	62, 224, 323, 468, 569, 638
FatI	CATG	3 cut(s)	60, 466, 636
FauI	CCCGC	1 cut(s)	465
Fnu4HI	GCNGC	4 cut(s)	51, 75, 306, 560
FokI	GGATG	2 cut(s)	104, 623
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	4 cut(s)	51, 75, 306, 560
GlaI	GCGC	1 cut(s)	632
GluI	GCNGC	4 cut(s)	51, 75, 306, 560
GsaI	CCCAGC	1 cut(s)	630
GsuI	CTGGAG	2 cut(s)	171, 309
HaeIII	GGCC	4 cut(s)	53, 114, 426, 580
HhaI	GCGC	1 cut(s)	633
Hin1II	CATG	3 cut(s)	64, 470, 640
Hin6I	GCGC	1 cut(s)	631
HinP1I	GCGC	1 cut(s)	631
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	1 cut(s)	202
Hpy188I	TCNGA	2 cut(s)	207, 488
Hpy188III	TCNNGA	1 cut(s)	150
HpyCH4III	ACNGT	1 cut(s)	343
HpyCH4V	TGCA	4 cut(s)	58, 88, 199, 305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	120, 236, 267, 419
HpyF3I	CTNAG	3 cut(s)	414, 574, 651
Hsp92II	CATG	3 cut(s)	64, 470, 640
HspAI	GCGC	1 cut(s)	631
Kzo9I	GATC	2 cut(s)	534, 618
LmnI	GCTCC	1 cut(s)	290
Lsp1109I	GCAGC	1 cut(s)	317
LweI	GCATC	1 cut(s)	373
MalI	GATC	2 cut(s)	536, 620
MbiI	CCGCTC	1 cut(s)	472
MboI	GATC	2 cut(s)	534, 618
MboII	GAAGA	2 cut(s)	346, 529
MfeI	CAATTG	1 cut(s)	596
MflI	RGATCY	1 cut(s)	534
MhlI	GDGCHC	2 cut(s)	358, 402
MluCI	AATT	4 cut(s)	219, 447, 585, 596
MmeI	TCCRAC	1 cut(s)	466
MnlI	CCTC	8 cut(s)	25, 107, 119, 197, 286, 437, 523, 633
MslI	CAYNNNNRTG	1 cut(s)	131
MspA1I	CMGCKG	1 cut(s)	239
MspR9I	CCNGG	1 cut(s)	232
MunI	CAATTG	1 cut(s)	596
Mva1269I	GAATGC	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	4 cut(s)	120, 236, 267, 419
NdeII	GATC	2 cut(s)	534, 618
NlaIII	CATG	3 cut(s)	64, 470, 640
NlaIV	GGNNCC	5 cut(s)	115, 124, 271, 399, 510
NmeAIII	GCCGAG	1 cut(s)	90
PctI	GAATGC	1 cut(s)	424
PfeI	GAWTC	1 cut(s)	202
PkrI	GCNGC	4 cut(s)	52, 76, 307, 561
PsiI	TTATAA	1 cut(s)	569
Psp124BI	GAGCTC	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	230
PspFI	CCCAGC	1 cut(s)	626
PspGI	CCWGG	1 cut(s)	230
PspN4I	GGNNCC	5 cut(s)	115, 124, 271, 399, 510
PspPI	GGNCC	3 cut(s)	52, 113, 578
PstNI	CAGNNNCTG	1 cut(s)	581
PsuI	RGATCY	1 cut(s)	534
PvuII	CAGCTG	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	131
SacI	GAGCTC	1 cut(s)	358
SatI	GCNGC	4 cut(s)	51, 75, 306, 560
Sau3AI	GATC	2 cut(s)	534, 618
Sau96I	GGNCC	3 cut(s)	52, 113, 578
ScrFI	CCNGG	1 cut(s)	232
SduI	GDGCHC	2 cut(s)	358, 402
SetI	ASST	8 cut(s)	36, 111, 165, 241, 278, 295, 358, 376
SfaNI	GCATC	1 cut(s)	373
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	1 cut(s)	455
SmoI	CTYRAG	1 cut(s)	455
Sse9I	AATT	4 cut(s)	219, 447, 585, 596
SsiI	CCGC	6 cut(s)	29, 50, 75, 261, 472, 559
SstI	GAGCTC	1 cut(s)	358
StyD4I	CCNGG	1 cut(s)	230
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	343
TaqI	TCGA	2 cut(s)	429, 540
TasI	AATT	4 cut(s)	219, 447, 585, 596
TauI	GCSGC	3 cut(s)	53, 77, 562
TfiI	GAWTC	1 cut(s)	202
TscAI	CASTG	1 cut(s)	508
TseI	GCWGC	1 cut(s)	305
TspDTI	ATGAA	3 cut(s)	77, 342, 627
TspGWI	ACGGA	1 cut(s)	611
TspRI	CASTG	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.