Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0028875

Physical Location & Seq

Genomic Coordinates Reverse (-)

12417931 .. 12418784

Gene Structure 854 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1108200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGATGAGCCCAGTAGTGGACTTGATCCAGCTTCAAGAAAACATCTACGGAATATTGTCGAGTGGGCAAAACAAGACCGCGCAATTGTCCTGACCACACTTTCCATGGAGGAGGCAGAGTACATACGTGATCGACTAGGAATTGTCACAGACGGCACACTGCAGTGCATAGGAAATCCAAAGGAGCTGCAGGCCGGATATGGAGGATCGTATGACTTAGCGATCACAACAACTTGGGATCATGAACAGGAAGTGGAGGACATGGTCCGAACTCTCTGCCCAAATTCGAACAAGGTTTACCAGCTGTCGGGGACACACAAGTTCGAGCTGCCAAAGAGTGAGGTAGGTAAGAGTTTGCACAAGTATTCCAAACAGTGGAGAATGCGGTTCACGGTTTTTGCACGGGGTCTGGCTGATAGCCTGATACTACTTGGGAGGATGTTTTTATCAAGGTTGCAAGTGGATCCAACACTTGAATCTATTCAAAGGTTTAAAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

167

Amino Acids

18.92

Weight (kDa)

6.91

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABCA12_C	PF24526	71 - 115	2.1e-20	ABCA12-like, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028875)

Species	Orthologous Gene IDs
malus_domestica	MD07G1108200.v1.1
pyrus_communis	pycom07g09250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	375
AccII	CGCG	1 cut(s)	81
AciI	CCGC	2 cut(s)	79, 385
AclWI	GGATC	5 cut(s)	20, 214, 246, 458, 471
AcsI	RAATTY	1 cut(s)	283
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	17, 307, 375
AgsI	TTSAA	3 cut(s)	36, 476, 485
AleI	CACNNNNGTG	1 cut(s)	163
AluBI	AGCT	4 cut(s)	32, 187, 304, 328
AluI	AGCT	4 cut(s)	32, 187, 304, 328
AlwI	GGATC	5 cut(s)	20, 214, 246, 458, 471
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	2 cut(s)	187, 328
ApoI	RAATTY	1 cut(s)	283
Asp700I	GAANNNNTTC	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	287
AvaII	GGWCC	1 cut(s)	265
BamHI	GGATCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	12
BbvI	GCAGC	2 cut(s)	174, 315
BceAI	ACGGC	1 cut(s)	169
BcgI	CGANNNNNNTGC	2 cut(s)	258, 292
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	2 cut(s)	161, 188
BisI	GCNGC	2 cut(s)	188, 329
BlsI	GCNGC	2 cut(s)	189, 330
Bme18I	GGWCC	1 cut(s)	265
BmgT120I	GGNCC	1 cut(s)	265
BmiI	GGNNCC	1 cut(s)	465
BmrI	ACTGGG	1 cut(s)	6
BmuI	ACTGGG	1 cut(s)	6
Bpu14I	TTCGAA	1 cut(s)	287
BsaAI	YACGTR	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	105
BsaXI	ACNNNNNCTCC	2 cut(s)	104, 134
Bsc4I	CCNNNNNNNGG	3 cut(s)	17, 307, 375
Bse1I	ACTGG	1 cut(s)	12
BseDI	CCNNGG	1 cut(s)	105
BseGI	GGATG	2 cut(s)	10, 444
BseLI	CCNNNNNNNGG	3 cut(s)	17, 307, 375
BseNI	ACTGG	1 cut(s)	12
BseRI	GAGGAG	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	174, 315
Bsh1236I	CGCG	1 cut(s)	81
BshFI	GGCC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	195
BslFI	GGGAC	1 cut(s)	325
BslI	CCNNNNNNNGG	3 cut(s)	17, 307, 375
BsmFI	GGGAC	1 cut(s)	325
BsmI	GAATGC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	194
Bsp119I	TTCGAA	1 cut(s)	287
Bsp1286I	GDGCHC	1 cut(s)	12
Bsp143I	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
Bsp19I	CCATGG	1 cut(s)	105
BspACI	CCGC	2 cut(s)	79, 385
BspANI	GGCC	1 cut(s)	194
BspFNI	CGCG	1 cut(s)	81
BspHI	TCATGA	1 cut(s)	241
BspLI	GGNNCC	1 cut(s)	465
BspMAI	CTGCAG	2 cut(s)	165, 192
BspPI	GGATC	5 cut(s)	20, 214, 246, 458, 471
BspT104I	TTCGAA	1 cut(s)	287
BsrI	ACTGG	1 cut(s)	12
BssECI	CCNNGG	1 cut(s)	105
BssMI	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
BssT1I	CCWWGG	1 cut(s)	105
Bst4CI	ACNGT	2 cut(s)	375, 394
BstBAI	YACGTR	1 cut(s)	128
BstBI	TTCGAA	1 cut(s)	287
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	1 cut(s)	217
BstDSI	CCRYGG	1 cut(s)	105
BstF5I	GGATG	2 cut(s)	10, 444
BstFNI	CGCG	1 cut(s)	81
BstHHI	GCGC	1 cut(s)	83
BstKTI	GATC	6 cut(s)	28, 133, 209, 225, 241, 466
BstMBI	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
BstSFI	CTRYAG	2 cut(s)	161, 188
BstUI	CGCG	1 cut(s)	81
BstV1I	GCAGC	2 cut(s)	174, 315
BstX2I	RGATCY	1 cut(s)	463
BstYI	RGATCY	1 cut(s)	463
BsuRI	GGCC	1 cut(s)	194
BtgI	CCRYGG	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	10, 444
BtsI	GCAGTG	2 cut(s)	158, 170
BtsIMutI	CAGTG	3 cut(s)	158, 170, 380
Cac8I	GCNNGC	1 cut(s)	192
CciI	TCATGA	1 cut(s)	241
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	265
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	4 cut(s)	106, 242, 262, 498
CviJI	RGCY	8 cut(s)	10, 32, 187, 194, 304, 328, 413, 420
CviKI_1	RGCY	8 cut(s)	10, 32, 187, 194, 304, 328, 413, 420
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	6 cut(s)	27, 132, 208, 224, 240, 465
DpnII	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
DraI	TTTAAA	1 cut(s)	493
Eco130I	CCWWGG	1 cut(s)	105
Eco24I	GRGCYC	1 cut(s)	12
Eco47I	GGWCC	1 cut(s)	265
EcoT14I	CCWWGG	1 cut(s)	105
EcoT38I	GRGCYC	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	105
FaeI	CATG	4 cut(s)	109, 245, 265, 501
FaiI	YATR	8 cut(s)	107, 125, 170, 201, 213, 243, 263, 499
FaqI	GGGAC	1 cut(s)	325
FatI	CATG	4 cut(s)	105, 241, 261, 497
Fnu4HI	GCNGC	2 cut(s)	188, 329
FokI	GGATG	2 cut(s)	17, 451
FriOI	GRGCYC	1 cut(s)	12
Fsp4HI	GCNGC	2 cut(s)	188, 329
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	2 cut(s)	188, 329
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	195
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	109, 245, 265, 501
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	1 cut(s)	476
HpaII	CCGG	1 cut(s)	195
Hpy166II	GTNNAC	3 cut(s)	20, 298, 390
Hpy188I	TCNGA	1 cut(s)	269
Hpy188III	TCNNGA	3 cut(s)	36, 91, 242
Hpy8I	GTNNAC	3 cut(s)	20, 298, 390
HpyCH4III	ACNGT	2 cut(s)	375, 394
HpyCH4IV	ACGT	1 cut(s)	127
HpyCH4V	TGCA	6 cut(s)	163, 168, 190, 358, 401, 457
HpyF3I	CTNAG	1 cut(s)	217
HpySE526I	ACGT	1 cut(s)	127
Hsp92II	CATG	4 cut(s)	109, 245, 265, 501
HspAI	GCGC	1 cut(s)	81
Kzo9I	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
LmnI	GCTCC	1 cut(s)	184
LpnPI	CCDG	9 cut(s)	25, 42, 104, 176, 208, 233, 314, 395, 434
Lsp1109I	GCAGC	2 cut(s)	174, 315
MaeI	CTAG	1 cut(s)	137
MaeII	ACGT	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	145
MalI	GATC	6 cut(s)	27, 132, 208, 224, 240, 465
MboI	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
MfeI	CAATTG	1 cut(s)	84
MflI	RGATCY	1 cut(s)	463
MhlI	GDGCHC	1 cut(s)	12
MluCI	AATT	3 cut(s)	84, 141, 283
MmeI	TCCRAC	1 cut(s)	491
MnlI	CCTC	6 cut(s)	103, 106, 197, 250, 334, 429
MroXI	GAANNNNTTC	1 cut(s)	480
MseI	TTAA	1 cut(s)	492
MslI	CAYNNNNRTG	1 cut(s)	163
MspA1I	CMGCKG	1 cut(s)	304
MspI	CCGG	1 cut(s)	195
MunI	CAATTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	387
MvnI	CGCG	1 cut(s)	81
NcoI	CCATGG	1 cut(s)	105
NdeII	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
NlaIII	CATG	4 cut(s)	109, 245, 265, 501
NlaIV	GGNNCC	1 cut(s)	465
NmuCI	GTSAC	1 cut(s)	145
NspV	TTCGAA	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	163
PagI	TCATGA	1 cut(s)	241
PctI	GAATGC	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	480
PfeI	GAWTC	1 cut(s)	476
PflFI	GACNNNGTC	1 cut(s)	263
PflMI	CCANNNNNTGG	1 cut(s)	375
PkrI	GCNGC	2 cut(s)	189, 330
Ppu21I	YACGTR	1 cut(s)	128
PspN4I	GGNNCC	1 cut(s)	465
PspPI	GGNCC	1 cut(s)	265
PsrI	GAACNNNNNNTAC	2 cut(s)	281, 313
PstI	CTGCAG	2 cut(s)	165, 192
PsuI	RGATCY	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	263
PvuII	CAGCTG	1 cut(s)	304
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
RseI	CAYNNNNRTG	1 cut(s)	163
SaqAI	TTAA	1 cut(s)	492
SatI	GCNGC	2 cut(s)	188, 329
Sau3AI	GATC	6 cut(s)	25, 130, 206, 222, 238, 463
Sau96I	GGNCC	1 cut(s)	265
SduI	GDGCHC	1 cut(s)	12
SfcI	CTRYAG	2 cut(s)	161, 188
SfuI	TTCGAA	1 cut(s)	287
SinI	GGWCC	1 cut(s)	265
SmiMI	CAYNNNNRTG	1 cut(s)	163
Sse9I	AATT	3 cut(s)	84, 141, 283
SsiI	CCGC	2 cut(s)	79, 385
SspI	AATATT	1 cut(s)	55
SspMI	CTAG	1 cut(s)	137
StyI	CCWWGG	1 cut(s)	105
TaaI	ACNGT	2 cut(s)	375, 394
TaiI	ACGT	1 cut(s)	130
TaqI	TCGA	4 cut(s)	60, 133, 287, 324
TasI	AATT	3 cut(s)	84, 141, 283
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	476
Tru1I	TTAA	1 cut(s)	492
Tru9I	TTAA	1 cut(s)	492
TscAI	CASTG	3 cut(s)	165, 170, 380
TseFI	GTSAC	1 cut(s)	145
TseI	GCWGC	2 cut(s)	187, 328
Tsp45I	GTSAC	1 cut(s)	145
TspDTI	ATGAA	1 cut(s)	258
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	3 cut(s)	165, 170, 380
Tth111I	GACNNNGTC	1 cut(s)	263
Van91I	CCANNNNNTGG	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	1 cut(s)	283
XcmI	CCANNNNNNNNNTGG	1 cut(s)	103
XmnI	GAANNNNTTC	1 cut(s)	480
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.