Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0028875

Physical Location & Seq

Genomic Coordinates Reverse (-)

8515507 .. 8516115

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g09250.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGAGGAGGCAGAGTACATATGTGATCGACTAGGAATTTTCACAGACGGCACACTGCAGTGCATGGGAAATCCAAAGGAGGCCAAATATGGAGGATCGTATGCCTTAGCAATCACAAAAACTTGGGATCATGAACAAGAAGTGGAGGACATGGTCCGAACCCTCTGCCCAAATTCGAACAAGGTTTACCAGCTGTCGGGGACACAGAAGTTCGAGCTGCCAAAGAGTGAGAGTACGTTGACAGTTTTTGCATGTGGTCTGGCTGATACTACTTTGGAGGATGTTTTTATCAAGGTTGCAAGTGGATCCAACACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

106

Amino Acids

11.58

Weight (kDa)

4.54

Isoelectric Point (pI)

31.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028875)

Species	Orthologous Gene IDs
malus_domestica	MD07G1108200.v1.1
pyrus_communis	pycom07g09250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	103, 135, 300, 313
AcsI	RAATTY	2 cut(s)	36, 172
AfaI	GTAC	2 cut(s)	17, 235
AfiI	CCNNNNNNNGG	1 cut(s)	196
AleI	CACNNNNGTG	1 cut(s)	58
AluBI	AGCT	2 cut(s)	193, 217
AluI	AGCT	2 cut(s)	193, 217
AlwI	GGATC	4 cut(s)	103, 135, 300, 313
AoxI	GGCC	1 cut(s)	81
ApeKI	GCWGC	1 cut(s)	217
ApoI	RAATTY	2 cut(s)	36, 172
AspS9I	GGNCC	1 cut(s)	154
AsuII	TTCGAA	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	154
BamHI	GGATCC	1 cut(s)	305
BbvI	GCAGC	1 cut(s)	204
BceAI	ACGGC	1 cut(s)	64
BcgI	CGANNNNNNTGC	2 cut(s)	147, 181
BfaI	CTAG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	56
BisI	GCNGC	1 cut(s)	218
BlsI	GCNGC	1 cut(s)	219
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	307
Bpu10I	CCTNAGC	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	176
BsaXI	ACNNNNNCTCC	1 cut(s)	29
Bsc4I	CCNNNNNNNGG	1 cut(s)	196
BseGI	GGATG	1 cut(s)	286
BseLI	CCNNNNNNNGG	1 cut(s)	196
BseRI	GAGGAG	1 cut(s)	20
BseXI	GCAGC	1 cut(s)	204
BshFI	GGCC	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	214
BslI	CCNNNNNNNGG	1 cut(s)	196
BsmFI	GGGAC	1 cut(s)	214
BsnI	GGCC	1 cut(s)	83
Bsp119I	TTCGAA	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	25, 95, 127, 305
BspANI	GGCC	1 cut(s)	83
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	60
BspPI	GGATC	4 cut(s)	103, 135, 300, 313
BspT104I	TTCGAA	1 cut(s)	176
BssMI	GATC	4 cut(s)	25, 95, 127, 305
Bst4CI	ACNGT	1 cut(s)	244
BstBI	TTCGAA	1 cut(s)	176
BstDEI	CTNAG	1 cut(s)	106
BstF5I	GGATG	1 cut(s)	286
BstKTI	GATC	4 cut(s)	28, 98, 130, 308
BstMBI	GATC	4 cut(s)	25, 95, 127, 305
BstNSI	RCATGY	1 cut(s)	255
BstSFI	CTRYAG	1 cut(s)	56
BstV1I	GCAGC	1 cut(s)	204
BstX2I	RGATCY	1 cut(s)	305
BstYI	RGATCY	1 cut(s)	305
BsuRI	GGCC	1 cut(s)	83
BtsCI	GGATG	1 cut(s)	286
BtsI	GCAGTG	2 cut(s)	53, 65
BtsIMutI	CAGTG	2 cut(s)	53, 65
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	1 cut(s)	154
Csp6I	GTAC	2 cut(s)	16, 234
CviAII	CATG	4 cut(s)	64, 131, 151, 252
CviJI	RGCY	4 cut(s)	83, 193, 217, 263
CviKI_1	RGCY	4 cut(s)	83, 193, 217, 263
CviQI	GTAC	2 cut(s)	16, 234
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	4 cut(s)	27, 97, 129, 307
DpnII	GATC	4 cut(s)	25, 95, 127, 305
Eco47I	GGWCC	1 cut(s)	154
FaeI	CATG	4 cut(s)	67, 134, 154, 255
FaiI	YATR	8 cut(s)	20, 22, 65, 90, 102, 132, 152, 253
FaqI	GGGAC	1 cut(s)	214
FatI	CATG	4 cut(s)	63, 130, 150, 251
FauNDI	CATATG	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	218
FokI	GGATG	1 cut(s)	293
Fsp4HI	GCNGC	1 cut(s)	218
FspBI	CTAG	1 cut(s)	32
GluI	GCNGC	1 cut(s)	218
HaeIII	GGCC	1 cut(s)	83
Hin1II	CATG	4 cut(s)	67, 134, 154, 255
HincII	GTYRAC	1 cut(s)	240
HindII	GTYRAC	1 cut(s)	240
Hpy166II	GTNNAC	2 cut(s)	187, 240
Hpy188I	TCNGA	1 cut(s)	158
Hpy188III	TCNNGA	1 cut(s)	131
Hpy8I	GTNNAC	2 cut(s)	187, 240
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	4 cut(s)	58, 63, 251, 299
HpyF3I	CTNAG	1 cut(s)	106
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	4 cut(s)	67, 134, 154, 255
Kzo9I	GATC	4 cut(s)	25, 95, 127, 305
LpnPI	CCDG	2 cut(s)	203, 245
Lsp1109I	GCAGC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	32
MaeII	ACGT	1 cut(s)	236
MalI	GATC	4 cut(s)	27, 97, 129, 307
MboI	GATC	4 cut(s)	25, 95, 127, 305
MflI	RGATCY	1 cut(s)	305
MluCI	AATT	2 cut(s)	36, 172
MnlI	CCTC	5 cut(s)	73, 86, 139, 173, 271
MslI	CAYNNNNRTG	1 cut(s)	58
MspA1I	CMGCKG	1 cut(s)	193
NdeI	CATATG	1 cut(s)	20
NdeII	GATC	4 cut(s)	25, 95, 127, 305
NlaIII	CATG	4 cut(s)	67, 134, 154, 255
NlaIV	GGNNCC	1 cut(s)	307
NspI	RCATGY	1 cut(s)	255
NspV	TTCGAA	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	58
PagI	TCATGA	1 cut(s)	130
PflFI	GACNNNGTC	1 cut(s)	152
PkrI	GCNGC	1 cut(s)	219
PspN4I	GGNNCC	1 cut(s)	307
PspPI	GGNCC	1 cut(s)	154
PsrI	GAACNNNNNNTAC	2 cut(s)	170, 202
PstI	CTGCAG	1 cut(s)	60
PsuI	RGATCY	1 cut(s)	305
PsyI	GACNNNGTC	1 cut(s)	152
PvuII	CAGCTG	1 cut(s)	193
RsaI	GTAC	2 cut(s)	17, 235
RsaNI	GTAC	2 cut(s)	16, 234
RseI	CAYNNNNRTG	1 cut(s)	58
SatI	GCNGC	1 cut(s)	218
Sau3AI	GATC	4 cut(s)	25, 95, 127, 305
Sau96I	GGNCC	1 cut(s)	154
SetI	ASST	5 cut(s)	186, 195, 219, 239, 297
SfcI	CTRYAG	1 cut(s)	56
SfuI	TTCGAA	1 cut(s)	176
SinI	GGWCC	1 cut(s)	154
SmiMI	CAYNNNNRTG	1 cut(s)	58
Sse9I	AATT	2 cut(s)	36, 172
SspMI	CTAG	1 cut(s)	32
TaaI	ACNGT	1 cut(s)	244
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	3 cut(s)	28, 176, 213
TasI	AATT	2 cut(s)	36, 172
TatI	WGTACW	1 cut(s)	15
TscAI	CASTG	2 cut(s)	60, 65
TseI	GCWGC	1 cut(s)	217
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	60, 65
Tth111I	GACNNNGTC	1 cut(s)	152
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	2 cut(s)	36, 172
XceI	RCATGY	1 cut(s)	255
XspI	CTAG	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.