MD07G1152600.v1.1

Lateral organ boundaries (LOB) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0024475
Physical Location & Seq
Reverse (-)
22231518 .. 22232232
715 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1152600.v1.1.491

Sequence Viewer

Length: 519 bp
ATGGACGGCCAAATAACGCCAATGCGCACTAGGGTTCATCAACCGTGTGCAGCCTGCCGGATGCTACGCCGAAGATGTGACATCAACTGCTCACTTGCACCATATTTCCCAATTGAGGAGATTGATAAGTTTGCTGGTGTCCATAGAGTTTTTGGTGCTAGCAATGTTATCAAAATGATTCAGATGGTGGAAGAGACAAGAAGGGAAGATGCAGTAAAAGCTATAGTGTATGAAGCAACAGCAAGAATTAGAGACCCCGTCTATGGCAGCACTGCAGCTATTTTTCATTTGCAGAAGATGATTGAAGAACTCAGATCCCAATTGGAAACAATAAAATCTCAAGTCTTGGAGTTGCAACAACACAGAGACCAGTTGCTGGGCATTCTTATGAACAATGTTCATTCCCTTGATTTGTTCTCCGACATGCATGACCCAATGTTTGGTGAAAGTTCCAAAGTGCAAGAGGATCCTGTATGGGATTTAGAGCCCAGGGATGAACGGCAGCGAGAGCGCGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

173

Amino Acids

20.01

Weight (kDa)

5.88

Isoelectric Point (pI)

60.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LOB PF03195 15 - 112 3.7e-36 Lateral organ boundaries (LOB) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024475)

Species Orthologous Gene IDs
malus_domestica MD07G1152600.v1.1
prunus_persica Prupe.2G191100_v2.0.a1
pyrus_communis pycom07g15080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 26
AccB7I CCANNNNNTGG 2 cut(s) 376, 440
AccII CGCG 1 cut(s) 513
AclWI GGATC 3 cut(s) 309, 461, 474
AcoI YGGCCR 1 cut(s) 7
AfiI CCNNNNNNNGG 4 cut(s) 115, 263, 376, 440
AgsI TTSAA 1 cut(s) 305
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 2 cut(s) 221, 278
AluI AGCT 2 cut(s) 221, 278
Alw26I GTCTC 3 cut(s) 188, 246, 360
AlwI GGATC 3 cut(s) 309, 461, 474
AlwNI CAGNNNCTG 1 cut(s) 376
AoxI GGCC 1 cut(s) 7
ApeKI GCWGC 4 cut(s) 50, 267, 275, 502
ArsI GACNNNNNNTTYG 2 cut(s) 422, 454
AspLEI GCGC 2 cut(s) 27, 513
AsuHPI GGTGA 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 158
BamHI GGATCC 1 cut(s) 466
BanII GRGCYC 1 cut(s) 489
BbvI GCAGC 4 cut(s) 62, 279, 287, 514
BccI CCATC 1 cut(s) 178
BceAI ACGGC 2 cut(s) 22, 515
BciT130I CCWGG 1 cut(s) 490
BcoDI GTCTC 3 cut(s) 188, 246, 360
BfaI CTAG 2 cut(s) 30, 159
BfmI CTRYAG 2 cut(s) 222, 273
BisI GCNGC 4 cut(s) 51, 268, 276, 503
BlsI GCNGC 4 cut(s) 52, 269, 277, 504
Bme1390I CCNGG 1 cut(s) 490
BmiI GGNNCC 1 cut(s) 468
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 2 cut(s) 51, 199
BmtI GCTAGC 1 cut(s) 162
BpuEI CTTGAG 1 cut(s) 324
BsaI GGTCTC 2 cut(s) 246, 360
BsaJI CCNNGG 2 cut(s) 488, 489
Bsc4I CCNNNNNNNGG 4 cut(s) 115, 263, 376, 440
Bse1I ACTGG 1 cut(s) 370
Bse3DI GCAATG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 488, 489
BseGI GGATG 2 cut(s) 66, 499
BseLI CCNNNNNNNGG 4 cut(s) 115, 263, 376, 440
BseMI GCAATG 1 cut(s) 169
BseMII CTCAG 1 cut(s) 325
BseNI ACTGG 1 cut(s) 370
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 4 cut(s) 62, 279, 287, 514
BseYI CCCAGC 1 cut(s) 376
BsgI GTGCAG 1 cut(s) 69
Bsh1236I CGCG 1 cut(s) 513
BshFI GGCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 4 cut(s) 115, 263, 376, 440
BsmAI GTCTC 3 cut(s) 188, 246, 360
BsmI GAATGC 1 cut(s) 381
BsnI GGCC 1 cut(s) 9
Bso31I GGTCTC 2 cut(s) 246, 360
Bsp1286I GDGCHC 1 cut(s) 489
Bsp143I GATC 2 cut(s) 314, 466
BspANI GGCC 1 cut(s) 9
BspCNI CTCAG 1 cut(s) 324
BspFNI CGCG 1 cut(s) 513
BspLI GGNNCC 1 cut(s) 468
BspMAI CTGCAG 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 3 cut(s) 309, 461, 474
BspTNI GGTCTC 2 cut(s) 246, 360
BsrDI GCAATG 1 cut(s) 169
BsrI ACTGG 1 cut(s) 370
BssECI CCNNGG 2 cut(s) 488, 489
BssMI GATC 2 cut(s) 314, 466
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 55, 160
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 66, 499
BstFNI CGCG 1 cut(s) 513
BstHHI GCGC 2 cut(s) 27, 513
BstKTI GATC 2 cut(s) 317, 469
BstMAI GTCTC 3 cut(s) 188, 246, 360
BstMBI GATC 2 cut(s) 314, 466
BstMWI GCNNNNNNNGC 2 cut(s) 218, 508
BstNI CCWGG 1 cut(s) 490
BstNSI RCATGY 1 cut(s) 427
BstSCI CCNGG 1 cut(s) 488
BstSFI CTRYAG 2 cut(s) 222, 273
BstUI CGCG 1 cut(s) 513
BstV1I GCAGC 4 cut(s) 62, 279, 287, 514
BstX2I RGATCY 2 cut(s) 314, 466
BstYI RGATCY 2 cut(s) 314, 466
BsuRI GGCC 1 cut(s) 9
BtsCI GGATG 2 cut(s) 66, 499
BtsI GCAGTG 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 270
Cac8I GCNNGC 2 cut(s) 55, 160
CaiI CAGNNNCTG 1 cut(s) 376
CfoI GCGC 2 cut(s) 27, 513
CviAII CATG 2 cut(s) 424, 428
CviJI RGCY 5 cut(s) 9, 53, 221, 278, 487
CviKI_1 RGCY 5 cut(s) 9, 53, 221, 278, 487
DdeI CTNAG 1 cut(s) 311
DpnI GATC 2 cut(s) 316, 468
DpnII GATC 2 cut(s) 314, 466
EaeI YGGCCR 1 cut(s) 7
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco24I GRGCYC 1 cut(s) 489
Eco31I GGTCTC 2 cut(s) 246, 360
EcoRII CCWGG 1 cut(s) 488
EcoT22I ATGCAT 1 cut(s) 429
EcoT38I GRGCYC 1 cut(s) 489
FaeI CATG 2 cut(s) 427, 431
FatI CATG 2 cut(s) 423, 427
Fnu4HI GCNGC 4 cut(s) 51, 268, 276, 503
FokI GGATG 2 cut(s) 73, 506
FriOI GRGCYC 1 cut(s) 489
Fsp4HI GCNGC 4 cut(s) 51, 268, 276, 503
FspAI RTGCGCAY 1 cut(s) 26
FspBI CTAG 2 cut(s) 30, 159
FspI TGCGCA 1 cut(s) 26
GlaI GCGC 2 cut(s) 26, 512
GluI GCNGC 4 cut(s) 51, 268, 276, 503
GsaI CCCAGC 1 cut(s) 380
HaeIII GGCC 1 cut(s) 9
HapII CCGG 1 cut(s) 58
HhaI GCGC 2 cut(s) 27, 513
Hin1II CATG 2 cut(s) 427, 431
Hin6I GCGC 2 cut(s) 25, 511
HinP1I GCGC 2 cut(s) 25, 511
HinfI GANTC 1 cut(s) 178
HpaII CCGG 1 cut(s) 58
HphI GGTGA 1 cut(s) 455
Hpy188I TCNGA 3 cut(s) 183, 314, 421
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 8 cut(s) 50, 98, 212, 275, 292, 355, 427, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 218, 508
HpyF3I CTNAG 1 cut(s) 311
Hsp92II CATG 2 cut(s) 427, 431
HspAI GCGC 2 cut(s) 25, 511
Kzo9I GATC 2 cut(s) 314, 466
LpnPI CCDG 8 cut(s) 67, 71, 120, 362, 383, 475, 483, 502
Lsp1109I GCAGC 4 cut(s) 62, 279, 287, 514
LweI GCATC 2 cut(s) 51, 199
MaeI CTAG 2 cut(s) 30, 159
MaeIII GTNAC 1 cut(s) 77
MalI GATC 2 cut(s) 316, 468
MboI GATC 2 cut(s) 314, 466
MboII GAAGA 5 cut(s) 84, 203, 218, 307, 317
MfeI CAATTG 2 cut(s) 111, 320
MflI RGATCY 2 cut(s) 314, 466
MhlI GDGCHC 1 cut(s) 489
MluCI AATT 3 cut(s) 111, 246, 320
MmeI TCCRAC 1 cut(s) 444
MnlI CCTC 2 cut(s) 109, 457
Mph1103I ATGCAT 1 cut(s) 429
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 490
MunI CAATTG 2 cut(s) 111, 320
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 490
MvnI CGCG 1 cut(s) 513
MwoI GCNNNNNNNGC 2 cut(s) 218, 508
NdeII GATC 2 cut(s) 314, 466
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 2 cut(s) 427, 431
NlaIV GGNNCC 1 cut(s) 468
NmuCI GTSAC 1 cut(s) 77
NsbI TGCGCA 1 cut(s) 26
NsiI ATGCAT 1 cut(s) 429
NspI RCATGY 1 cut(s) 427
PasI CCCWGGG 1 cut(s) 489
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 1 cut(s) 178
PflFI GACNNNGTC 1 cut(s) 257
PflMI CCANNNNNTGG 2 cut(s) 376, 440
PkrI GCNGC 4 cut(s) 52, 269, 277, 504
Psp6I CCWGG 1 cut(s) 488
PspFI CCCAGC 1 cut(s) 376
PspGI CCWGG 1 cut(s) 488
PspN4I GGNNCC 1 cut(s) 468
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 376
PsuI RGATCY 2 cut(s) 314, 466
PsyI GACNNNGTC 1 cut(s) 257
RseI CAYNNNNRTG 1 cut(s) 386
SatI GCNGC 4 cut(s) 51, 268, 276, 503
Sau3AI GATC 2 cut(s) 314, 466
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 1 cut(s) 489
SetI ASST 2 cut(s) 223, 280
SfaNI GCATC 2 cut(s) 51, 199
SfcI CTRYAG 2 cut(s) 222, 273
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 3 cut(s) 111, 246, 320
SspMI CTAG 2 cut(s) 30, 159
StyD4I CCNGG 1 cut(s) 488
TaaI ACNGT 1 cut(s) 45
TasI AATT 3 cut(s) 111, 246, 320
TfiI GAWTC 1 cut(s) 178
TscAI CASTG 1 cut(s) 277
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 4 cut(s) 50, 267, 275, 502
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 6 cut(s) 26, 246, 275, 389, 404, 510
TspRI CASTG 1 cut(s) 277
Tth111I GACNNNGTC 1 cut(s) 257
Van91I CCANNNNNTGG 2 cut(s) 376, 440
XceI RCATGY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 149
XspI CTAG 2 cut(s) 30, 159
Zsp2I ATGCAT 1 cut(s) 429
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.