Prupe.2G191100_v2.0.a1

Lateral organ boundaries (LOB) domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0024475
Physical Location & Seq
Reverse (-)
23050006 .. 23050840
835 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G191100.1

Sequence Viewer

Length: 465 bp
ATGGACACCCAAGTAGTACCAATGCATAATAGGGTTCATCAACCATGCGCAGCTTGCCGGATGCTACGCCGAAGATGTGACAGAAATTGCTCACTTGCACCATATTTCCCAGGGGAGGAGATTGAGAAGTTTGCTGGTGTGCATAAAGTTTTTGGTGCTAGCAATGTGATCAAAATGATTCAGATGGTGGAAGAGACAAGAAGGGAAGATGCAGTGAAAGCTCTAGTTTATGAAGCAAGAGCAAGGCTCAGAGACCCTGTTTATGGCAGCACTGGAGCTATTTTCCATTTGCAGAAGATGATTGAAGAACTCAGATCCCAATTGGAATCAATAAGATCTCAAGTCTTGGAGCTGCAACAACACAGAGATCAGTTGTTGGGCATTCTCATGAACAATGTTCATTGCCTTGAAGATGATCTATTCTCCACCATGCATCATGACCCAATGTTTGGTGGTGACCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LOB

Protein Analysis

155

Amino Acids

17.76

Weight (kDa)

6.44

Isoelectric Point (pI)

74.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024475)

Species Orthologous Gene IDs
malus_domestica MD07G1152600.v1.1
prunus_persica Prupe.2G191100_v2.0.a1
pyrus_communis pycom07g15080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 49
AccB7I CCANNNNNTGG 1 cut(s) 449
AclWI GGATC 1 cut(s) 309
AfaI GTAC 1 cut(s) 18
AfiI CCNNNNNNNGG 3 cut(s) 115, 263, 449
AgsI TTSAA 2 cut(s) 305, 410
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 4 cut(s) 53, 221, 278, 352
AluI AGCT 4 cut(s) 53, 221, 278, 352
Alw26I GTCTC 2 cut(s) 188, 246
AlwI GGATC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 50, 267, 352
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AspLEI GCGC 1 cut(s) 50
AsuNHI GCTAGC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 62, 279, 339
BccI CCATC 1 cut(s) 178
BciT130I CCWGG 1 cut(s) 111
BclI TGATCA 1 cut(s) 168
BcoDI GTCTC 2 cut(s) 188, 246
BfaI CTAG 2 cut(s) 159, 224
BglII AGATCT 1 cut(s) 335
BisI GCNGC 3 cut(s) 51, 268, 353
BlsI GCNGC 3 cut(s) 52, 269, 354
Bme1390I CCNGG 1 cut(s) 111
BmrFI CCNGG 1 cut(s) 111
BmsI GCATC 3 cut(s) 51, 199, 442
BmtI GCTAGC 1 cut(s) 162
BplI GAGNNNNNCTC 2 cut(s) 231, 263
BpmI CTGGAG 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 324
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 109, 110
Bsc4I CCNNNNNNNGG 3 cut(s) 115, 263, 449
Bse1I ACTGG 1 cut(s) 277
Bse3DI GCAATG 2 cut(s) 169, 400
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 2 cut(s) 109, 110
BseGI GGATG 1 cut(s) 66
BseLI CCNNNNNNNGG 3 cut(s) 115, 263, 449
BseMI GCAATG 2 cut(s) 169, 400
BseMII CTCAG 2 cut(s) 262, 325
BseNI ACTGG 1 cut(s) 277
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 3 cut(s) 62, 279, 339
BsiSI CCGG 1 cut(s) 58
BslI CCNNNNNNNGG 3 cut(s) 115, 263, 449
BsmAI GTCTC 2 cut(s) 188, 246
BsmI GAATGC 1 cut(s) 381
Bso31I GGTCTC 1 cut(s) 246
Bsp143I GATC 5 cut(s) 168, 314, 335, 367, 415
BspCNI CTCAG 2 cut(s) 261, 324
BspHI TCATGA 2 cut(s) 387, 436
BspOI GCTAGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 309
BspTNI GGTCTC 1 cut(s) 246
BsrDI GCAATG 2 cut(s) 169, 400
BsrI ACTGG 1 cut(s) 277
BssECI CCNNGG 2 cut(s) 109, 110
BssMI GATC 5 cut(s) 168, 314, 335, 367, 415
Bst2UI CCWGG 1 cut(s) 111
Bst6I CTCTTC 1 cut(s) 186
BstC8I GCNNGC 2 cut(s) 55, 160
BstDEI CTNAG 2 cut(s) 248, 311
BstEII GGTNACC 1 cut(s) 455
BstF5I GGATG 1 cut(s) 66
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 5 cut(s) 171, 317, 338, 370, 418
BstMAI GTCTC 2 cut(s) 188, 246
BstMBI GATC 5 cut(s) 168, 314, 335, 367, 415
BstMWI GCNNNNNNNGC 2 cut(s) 54, 218
BstNI CCWGG 1 cut(s) 111
BstPI GGTNACC 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 109
BstV1I GCAGC 3 cut(s) 62, 279, 339
BstX2I RGATCY 2 cut(s) 314, 335
BstYI RGATCY 2 cut(s) 314, 335
BtsCI GGATG 1 cut(s) 66
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 2 cut(s) 219, 270
Cac8I GCNNGC 2 cut(s) 55, 160
CciI TCATGA 2 cut(s) 387, 436
CfoI GCGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 17
CviAII CATG 4 cut(s) 45, 388, 430, 437
CviJI RGCY 5 cut(s) 53, 221, 247, 278, 352
CviKI_1 RGCY 5 cut(s) 53, 221, 247, 278, 352
CviQI GTAC 1 cut(s) 17
DdeI CTNAG 2 cut(s) 248, 311
DpnI GATC 5 cut(s) 170, 316, 337, 369, 417
DpnII GATC 5 cut(s) 168, 314, 335, 367, 415
Eam1104I CTCTTC 1 cut(s) 186
EarI CTCTTC 1 cut(s) 186
Eco31I GGTCTC 1 cut(s) 246
Eco91I GGTNACC 1 cut(s) 455
EcoO65I GGTNACC 1 cut(s) 455
EcoRII CCWGG 1 cut(s) 109
EcoT22I ATGCAT 2 cut(s) 27, 435
FaeI CATG 4 cut(s) 48, 391, 433, 440
FaiI YATR 9 cut(s) 27, 46, 103, 144, 231, 264, 389, 431, 438
FatI CATG 4 cut(s) 44, 387, 429, 436
FbaI TGATCA 1 cut(s) 168
Fnu4HI GCNGC 3 cut(s) 51, 268, 353
FokI GGATG 1 cut(s) 73
Fsp4HI GCNGC 3 cut(s) 51, 268, 353
FspBI CTAG 2 cut(s) 159, 224
FspI TGCGCA 1 cut(s) 49
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 51, 268, 353
GsuI CTGGAG 1 cut(s) 294
HapII CCGG 1 cut(s) 58
HhaI GCGC 1 cut(s) 50
Hin1II CATG 4 cut(s) 48, 391, 433, 440
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 2 cut(s) 178, 326
HpaII CCGG 1 cut(s) 58
Hpy188I TCNGA 3 cut(s) 183, 251, 314
Hpy188III TCNNGA 2 cut(s) 388, 437
HpyAV CCTTC 1 cut(s) 195
HpyCH4V TGCA 7 cut(s) 25, 98, 142, 212, 292, 355, 433
HpyF10VI GCNNNNNNNGC 2 cut(s) 54, 218
HpyF3I CTNAG 2 cut(s) 248, 311
Hsp92II CATG 4 cut(s) 48, 391, 433, 440
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 168
Kzo9I GATC 5 cut(s) 168, 314, 335, 367, 415
LmnI GCTCC 2 cut(s) 275, 349
LpnPI CCDG 6 cut(s) 71, 96, 120, 123, 258, 270
Lsp1109I GCAGC 3 cut(s) 62, 279, 339
LweI GCATC 3 cut(s) 51, 199, 442
MaeI CTAG 2 cut(s) 159, 224
MaeIII GTNAC 2 cut(s) 77, 455
MalI GATC 5 cut(s) 170, 316, 337, 369, 417
MboI GATC 5 cut(s) 168, 314, 335, 367, 415
MboII GAAGA 6 cut(s) 84, 203, 218, 307, 317, 422
MfeI CAATTG 1 cut(s) 320
MflI RGATCY 2 cut(s) 314, 335
MluCI AATT 2 cut(s) 85, 320
MnlI CCTC 1 cut(s) 109
Mph1103I ATGCAT 2 cut(s) 27, 435
MslI CAYNNNNRTG 1 cut(s) 386
MspI CCGG 1 cut(s) 58
MspR9I CCNGG 1 cut(s) 111
MunI CAATTG 1 cut(s) 320
Mva1269I GAATGC 1 cut(s) 381
MvaI CCWGG 1 cut(s) 111
MwoI GCNNNNNNNGC 2 cut(s) 54, 218
NdeII GATC 5 cut(s) 168, 314, 335, 367, 415
NheI GCTAGC 1 cut(s) 158
NlaIII CATG 4 cut(s) 48, 391, 433, 440
NmuCI GTSAC 2 cut(s) 77, 455
NsbI TGCGCA 1 cut(s) 49
NsiI ATGCAT 2 cut(s) 27, 435
PagI TCATGA 2 cut(s) 387, 436
PasI CCCWGGG 1 cut(s) 110
PctI GAATGC 1 cut(s) 381
PfeI GAWTC 2 cut(s) 178, 326
PflMI CCANNNNNTGG 1 cut(s) 449
PkrI GCNGC 3 cut(s) 52, 269, 354
Psp6I CCWGG 1 cut(s) 109
PspEI GGTNACC 1 cut(s) 455
PspGI CCWGG 1 cut(s) 109
PsuI RGATCY 2 cut(s) 314, 335
RsaI GTAC 1 cut(s) 18
RsaNI GTAC 1 cut(s) 17
RseI CAYNNNNRTG 1 cut(s) 386
SatI GCNGC 3 cut(s) 51, 268, 353
Sau3AI GATC 5 cut(s) 168, 314, 335, 367, 415
ScrFI CCNGG 1 cut(s) 111
SetI ASST 5 cut(s) 55, 223, 280, 354, 462
SfaNI GCATC 3 cut(s) 51, 199, 442
SmiMI CAYNNNNRTG 1 cut(s) 386
SmlI CTYRAG 1 cut(s) 339
SmoI CTYRAG 1 cut(s) 339
Sse9I AATT 2 cut(s) 85, 320
SspMI CTAG 2 cut(s) 159, 224
StyD4I CCNGG 1 cut(s) 109
TasI AATT 2 cut(s) 85, 320
TfiI GAWTC 2 cut(s) 178, 326
TscAI CASTG 2 cut(s) 219, 277
TseFI GTSAC 2 cut(s) 77, 455
TseI GCWGC 3 cut(s) 50, 267, 352
Tsp45I GTSAC 2 cut(s) 77, 455
TspDTI ATGAA 4 cut(s) 26, 246, 389, 404
TspRI CASTG 2 cut(s) 219, 277
Van91I CCANNNNNTGG 1 cut(s) 449
XspI CTAG 2 cut(s) 159, 224
Zsp2I ATGCAT 2 cut(s) 27, 435
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.