Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0024478

Physical Location & Seq

Genomic Coordinates Reverse (-)

22973344 .. 22974054

Gene Structure 711 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1158000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCTTCGTTATTCACAAAATCAGTTAAGTTGGGGCTCCTTCTCCGACTAATTTGTCTATTCATCTCGTCATTCTCGGTGTGCATTTCAACCCCTCCAGAGGACCACATAAAGTGTTCATCATCAAGCAACAAAAACTGCACCCTCACAAACTCCTATGGCATCTTCCCCGATCGATCGATGTGTAGAGCAGGTACCGTAGCATATCCTTCAAACGAGGAAGAACTAATTTCAATAGTGGCCAATGCAACAAAGAACAAGACTAAAATGAAGGTGGCAACTCGTTACTCTCATAGTATTCCAAAGCTGGTTTGTTCAAGTGAGGAAGATGGGTTGATCATAACCACCAAGCACCTCAATCGTGTGGTGGAGATTGATGCTGAAGCAAAGACCATGACATTGGAGAGTGGTGTGACTCTGAAGCAGCTCATCAGTGAGGCTGCAAAGGCAGGGCTGGCCTTGCCTTATACACCATATTGGTGGGGTTTAACCATTGGAGGTTTATTAGGGACTGGGGCACATGGCAGCACATTGTGGAGCAAGGGAAGCTCGGTTCATGATTACATGGTGGGTCTTACAATTGTGAGTCCGGGAGGGCCTAAAGATGGTTATGTCATGGTTCGAAGGCTCAACGATGGTGATAAAGATCTTAATGCAGCTAAAGTTTCACTTGGAGTCTTAGGAGTAATTTCCCAGGTATTTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

237

Amino Acids

25.42

Weight (kDa)

8.84

Isoelectric Point (pI)

39.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FAD_binding_4	PF01565	67 - 199	2e-21	FAD binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024478)

Species	Orthologous Gene IDs
malus_domestica	MD07G1158000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0481311
rosa_multiflora	Rmu_co8302855.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	54
Acc36I	ACCTGC	1 cut(s)	182
Acc65I	GGTACC	1 cut(s)	194
AccB1I	GGYRCC	1 cut(s)	194
AcoI	YGGCCR	1 cut(s)	240
AcuI	CTGAAG	2 cut(s)	402, 440
AdeI	CACNNNGTG	1 cut(s)	534
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	2 cut(s)	100, 605
AgsI	TTSAA	4 cut(s)	90, 213, 234, 318
AjnI	CCWGG	1 cut(s)	693
AloI	GAACNNNNNNTCC	2 cut(s)	537, 569
AluBI	AGCT	4 cut(s)	307, 427, 549, 659
AluI	AGCT	4 cut(s)	307, 427, 549, 659
AoxI	GGCC	3 cut(s)	240, 456, 596
ApeKI	GCWGC	4 cut(s)	424, 440, 525, 656
Asp718I	GGTACC	1 cut(s)	194
AspS9I	GGNCC	2 cut(s)	103, 596
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	650
AsuII	TTCGAA	1 cut(s)	622
AvaII	GGWCC	1 cut(s)	103
BaeGI	GKGCMC	1 cut(s)	520
BalI	TGGCCA	1 cut(s)	242
BanI	GGYRCC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	39
BbvI	GCAGC	4 cut(s)	427, 436, 537, 668
BccI	CCATC	3 cut(s)	323, 599, 629
BcgI	CGANNNNNNTGC	2 cut(s)	341, 375
BciT130I	CCWGG	1 cut(s)	695
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	591
BfuAI	ACCTGC	1 cut(s)	182
BglII	AGATCT	1 cut(s)	646
BisI	GCNGC	4 cut(s)	425, 441, 526, 657
BlsI	GCNGC	4 cut(s)	426, 442, 527, 658
Bme1390I	CCNGG	2 cut(s)	591, 695
Bme18I	GGWCC	1 cut(s)	103
BmgT120I	GGNCC	2 cut(s)	103, 596
BmiI	GGNNCC	2 cut(s)	38, 196
BmrFI	CCNGG	2 cut(s)	591, 695
BmrI	ACTGGG	1 cut(s)	522
BmsI	GCATC	2 cut(s)	171, 367
BmuI	ACTGGG	1 cut(s)	522
BpmI	CTGGAG	1 cut(s)	81
Bpu14I	TTCGAA	1 cut(s)	622
BpuMI	CCSGG	1 cut(s)	591
Bsa29I	ATCGAT	2 cut(s)	175, 179
BsaBI	GATNNNNATC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 605
Bse1I	ACTGG	1 cut(s)	517
Bse8I	GATNNNNATC	1 cut(s)	645
BseBI	CCWGG	1 cut(s)	695
BseCI	ATCGAT	2 cut(s)	175, 179
BseDI	CCNNGG	1 cut(s)	693
BseJI	GATNNNNATC	1 cut(s)	645
BseLI	CCNNNNNNNGG	2 cut(s)	100, 605
BseNI	ACTGG	1 cut(s)	517
BseSI	GKGCMC	1 cut(s)	520
BseXI	GCAGC	4 cut(s)	427, 436, 537, 668
BsgI	GTGCAG	1 cut(s)	124
Bsh1285I	CGRYCG	2 cut(s)	175, 179
BshFI	GGCC	3 cut(s)	242, 458, 598
BshNI	GGYRCC	1 cut(s)	194
BshVI	ATCGAT	2 cut(s)	175, 179
BsiEI	CGRYCG	2 cut(s)	175, 179
BsiSI	CCGG	1 cut(s)	590
BslFI	GGGAC	1 cut(s)	523
BslI	CCNNNNNNNGG	2 cut(s)	100, 605
BsmFI	GGGAC	1 cut(s)	523
BsnI	GGCC	3 cut(s)	242, 458, 598
Bsp119I	TTCGAA	1 cut(s)	622
Bsp1286I	GDGCHC	2 cut(s)	39, 520
Bsp143I	GATC	4 cut(s)	172, 176, 336, 646
BspANI	GGCC	3 cut(s)	242, 458, 598
BspDI	ATCGAT	2 cut(s)	175, 179
BspHI	TCATGA	1 cut(s)	556
BspLI	GGNNCC	2 cut(s)	38, 196
BspMI	ACCTGC	1 cut(s)	182
BspT104I	TTCGAA	1 cut(s)	622
BspT107I	GGYRCC	1 cut(s)	194
BsrI	ACTGG	1 cut(s)	517
BssECI	CCNNGG	1 cut(s)	693
BssMI	GATC	4 cut(s)	172, 176, 336, 646
Bst2UI	CCWGG	1 cut(s)	695
Bst4CI	ACNGT	1 cut(s)	199
BstBI	TTCGAA	1 cut(s)	622
BstC8I	GCNNGC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	679
BstKTI	GATC	4 cut(s)	175, 179, 339, 649
BstMBI	GATC	4 cut(s)	172, 176, 336, 646
BstMCI	CGRYCG	2 cut(s)	175, 179
BstMWI	GCNNNNNNNGC	4 cut(s)	446, 455, 460, 546
BstNI	CCWGG	1 cut(s)	695
BstSCI	CCNGG	2 cut(s)	589, 693
BstSLI	GKGCMC	1 cut(s)	520
BstV1I	GCAGC	4 cut(s)	427, 436, 537, 668
BstX2I	RGATCY	1 cut(s)	646
BstXI	CCANNNNNNTGG	2 cut(s)	400, 480
BstYI	RGATCY	1 cut(s)	646
Bsu15I	ATCGAT	2 cut(s)	175, 179
BsuRI	GGCC	3 cut(s)	242, 458, 598
BsuTUI	ATCGAT	2 cut(s)	175, 179
BtsIMutI	CAGTG	1 cut(s)	439
BveI	ACCTGC	1 cut(s)	182
Cac8I	GCNNGC	1 cut(s)	456
CciI	TCATGA	1 cut(s)	556
Cfr13I	GGNCC	2 cut(s)	103, 596
ClaI	ATCGAT	2 cut(s)	175, 179
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	5 cut(s)	394, 521, 557, 565, 616
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	1 cut(s)	679
DpnI	GATC	4 cut(s)	174, 178, 338, 648
DpnII	GATC	4 cut(s)	172, 176, 336, 646
DraIII	CACNNNGTG	1 cut(s)	534
DrdI	GACNNNNNNGTC	1 cut(s)	54
DseDI	GACNNNNNNGTC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	240
Eco24I	GRGCYC	1 cut(s)	39
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	402, 440
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRII	CCWGG	1 cut(s)	693
EcoT38I	GRGCYC	1 cut(s)	39
FaeI	CATG	5 cut(s)	397, 524, 560, 568, 619
FalI	AAGNNNNNCTT	2 cut(s)	654, 686
FaqI	GGGAC	1 cut(s)	523
FatI	CATG	5 cut(s)	393, 520, 556, 564, 615
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	425, 441, 526, 657
FriOI	GRGCYC	1 cut(s)	39
Fsp4HI	GCNGC	4 cut(s)	425, 441, 526, 657
GluI	GCNGC	4 cut(s)	425, 441, 526, 657
GsuI	CTGGAG	1 cut(s)	81
HaeIII	GGCC	3 cut(s)	242, 458, 598
HapII	CCGG	1 cut(s)	590
Hin1II	CATG	5 cut(s)	397, 524, 560, 568, 619
HinfI	GANTC	3 cut(s)	415, 586, 675
HpaII	CCGG	1 cut(s)	590
HphI	GGTGA	1 cut(s)	650
Hpy188I	TCNGA	2 cut(s)	47, 420
Hpy188III	TCNNGA	2 cut(s)	98, 557
HpyAV	CCTTC	4 cut(s)	50, 219, 265, 618
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	5 cut(s)	84, 141, 248, 443, 656
HpyF10VI	GCNNNNNNNGC	4 cut(s)	446, 455, 460, 546
HpyF3I	CTNAG	1 cut(s)	679
Hsp92II	CATG	5 cut(s)	397, 524, 560, 568, 619
KpnI	GGTACC	1 cut(s)	198
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	4 cut(s)	172, 176, 336, 646
LmnI	GCTCC	2 cut(s)	42, 537
LpnPI	CCDG	9 cut(s)	111, 177, 293, 435, 440, 498, 603, 680, 707
Lsp1109I	GCAGC	4 cut(s)	427, 436, 537, 668
LweI	GCATC	2 cut(s)	171, 367
MaeIII	GTNAC	2 cut(s)	284, 412
MalI	GATC	4 cut(s)	174, 178, 338, 648
MboI	GATC	4 cut(s)	172, 176, 336, 646
MboII	GAAGA	3 cut(s)	157, 233, 338
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	646
MhlI	GDGCHC	2 cut(s)	39, 520
MlsI	TGGCCA	1 cut(s)	242
MluCI	AATT	4 cut(s)	51, 228, 579, 687
MluNI	TGGCCA	1 cut(s)	242
MlyI	GAGTC	3 cut(s)	409, 595, 684
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	9 cut(s)	94, 105, 155, 211, 316, 365, 430, 491, 587
Mox20I	TGGCCA	1 cut(s)	242
MscI	TGGCCA	1 cut(s)	242
MseI	TTAA	4 cut(s)	27, 488, 651, 709
MslI	CAYNNNNRTG	1 cut(s)	478
Msp20I	TGGCCA	1 cut(s)	242
MspI	CCGG	1 cut(s)	590
MspR9I	CCNGG	2 cut(s)	591, 695
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	1 cut(s)	695
MwoI	GCNNNNNNNGC	4 cut(s)	446, 455, 460, 546
NciI	CCSGG	1 cut(s)	591
NdeII	GATC	4 cut(s)	172, 176, 336, 646
NlaIII	CATG	5 cut(s)	397, 524, 560, 568, 619
NlaIV	GGNNCC	2 cut(s)	38, 196
NmuCI	GTSAC	1 cut(s)	412
NspV	TTCGAA	1 cut(s)	622
PagI	TCATGA	1 cut(s)	556
PfoI	TCCNGGA	1 cut(s)	589
PkrI	GCNGC	4 cut(s)	426, 442, 527, 658
Ple19I	CGATCG	2 cut(s)	175, 179
PleI	GAGTC	3 cut(s)	409, 594, 683
PpsI	GAGTC	3 cut(s)	409, 594, 683
Psp6I	CCWGG	1 cut(s)	693
PspGI	CCWGG	1 cut(s)	693
PspN4I	GGNNCC	2 cut(s)	38, 196
PspPI	GGNCC	2 cut(s)	103, 596
PsuI	RGATCY	1 cut(s)	646
PvuI	CGATCG	2 cut(s)	175, 179
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
RseI	CAYNNNNRTG	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	27, 488, 651, 709
SatI	GCNGC	4 cut(s)	425, 441, 526, 657
Sau3AI	GATC	4 cut(s)	172, 176, 336, 646
Sau96I	GGNCC	2 cut(s)	103, 596
SchI	GAGTC	3 cut(s)	409, 595, 684
ScrFI	CCNGG	2 cut(s)	591, 695
SduI	GDGCHC	2 cut(s)	39, 520
SetI	ASST	9 cut(s)	196, 276, 309, 357, 429, 502, 551, 661, 699
SfaNI	GCATC	2 cut(s)	171, 367
SfuI	TTCGAA	1 cut(s)	622
SinI	GGWCC	1 cut(s)	103
SmiMI	CAYNNNNRTG	1 cut(s)	478
Sse9I	AATT	4 cut(s)	51, 228, 579, 687
StyD4I	CCNGG	2 cut(s)	589, 693
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	175, 179, 622
TasI	AATT	4 cut(s)	51, 228, 579, 687
Tru1I	TTAA	4 cut(s)	27, 488, 651, 709
Tru9I	TTAA	4 cut(s)	27, 488, 651, 709
TscAI	CASTG	1 cut(s)	439
TseFI	GTSAC	1 cut(s)	412
TseI	GCWGC	4 cut(s)	424, 440, 525, 656
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	4 cut(s)	52, 108, 284, 545
TspRI	CASTG	1 cut(s)	439
VpaK11BI	GGWCC	1 cut(s)	103

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.