Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8302855.1

Orthogroup ID

OG0024478

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 577

Gene Structure 577 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8302855.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 520 bp

tacggaggaagaactcgttaaggtcgtggctgatgcaaccaagaacaagaagagcatgaaggtggcgactcgttactcccacagcattcccaagctggtttgcccgcgcggcgaagacgggctgatcataagcaccaacaacctcaaccgtgtggtgaaggtcgacgttgaagggatgaagatgacggtggagagcggcatgacgcttaggcaggtgatcagtgaggctgcgaaggttgacttggcgttgccttacgcaccatattggtgggggctaactgtcggtgggttgctagggactggtgcgcatggaagcacattatggggtaagggaagctctgttcatgattatgtggtgggacttaggattgtgagttcaggagggcctgaagttggttatgtcaaggtgagaagtctcggtcaaggtgataaagatcttaatgcagctaaggtttcacttggagtcttaggagtaatatcacaggcaagtacattttcttcttcatttatatatttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005996 GO:0006082 GO:0006732 GO:0006766 GO:0006767 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009110 GO:0009987 GO:0016051 GO:0016053 GO:0016491 GO:0016614 GO:0016899 GO:0019752 GO:0019852 GO:0019853 GO:0030312 GO:0036094 GO:0042364 GO:0043167 GO:0043168 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044464 GO:0046364 GO:0046394 GO:0048037 GO:0050105 GO:0050660 GO:0050662 GO:0051186 GO:0051188 GO:0055114 GO:0071704 GO:0071944 GO:0097159 GO:1901265 GO:1901363 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ALO FAD_binding_4

Protein Analysis

172

Amino Acids

18.3

Weight (kDa)

9.16

Isoelectric Point (pI)

24.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024478)

Species	Orthologous Gene IDs
malus_domestica	MD07G1158000.v1.1
rosa_chinensis	RchiOBHm_Chr3g0481311
rosa_multiflora	Rmu_co8302855.1_g000001

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	203
Acc16I	TGCGCA	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	196
AccI	GTMKAC	1 cut(s)	163
AccII	CGCG	2 cut(s)	107, 109
AciI	CCGC	3 cut(s)	105, 109, 196
AcuI	CTGAAG	1 cut(s)	409
AfaI	GTAC	1 cut(s)	491
AfiI	CCNNNNNNNGG	1 cut(s)	393
AgsI	TTSAA	1 cut(s)	171
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AloI	GAACNNNNNNTCC	4 cut(s)	325, 357, 359, 391
AluBI	AGCT	3 cut(s)	95, 337, 447
AluI	AGCT	3 cut(s)	95, 337, 447
Alw26I	GTCTC	1 cut(s)	420
AoxI	GGCC	1 cut(s)	384
ApeKI	GCWGC	2 cut(s)	228, 444
AspLEI	GCGC	2 cut(s)	109, 308
AspS9I	GGNCC	1 cut(s)	384
AsuHPI	GGTGA	4 cut(s)	167, 227, 419, 438
BarI	GAAGNNNNNNTAC	2 cut(s)	482, 514
BbsI	GAAGAC	1 cut(s)	121
BbvI	GCAGC	2 cut(s)	215, 456
BclI	TGATCA	2 cut(s)	124, 217
BcoDI	GTCTC	1 cut(s)	420
BfaI	CTAG	1 cut(s)	294
BfuAI	ACCTGC	1 cut(s)	203
BglI	GCCNNNNNGGC	1 cut(s)	109
BglII	AGATCT	1 cut(s)	434
BisI	GCNGC	4 cut(s)	110, 197, 229, 445
BlsI	GCNGC	4 cut(s)	111, 198, 230, 446
BmgT120I	GGNCC	1 cut(s)	384
BmsI	GCATC	1 cut(s)	23
BpiI	GAAGAC	1 cut(s)	121
Bpu10I	CCTNAGC	2 cut(s)	207, 448
BsaBI	GATNNNNATC	1 cut(s)	433
Bsc4I	CCNNNNNNNGG	1 cut(s)	393
Bse1I	ACTGG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	433
BseGI	GGATG	1 cut(s)	181
BseJI	GATNNNNATC	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	393
BseNI	ACTGG	1 cut(s)	305
BseXI	GCAGC	2 cut(s)	215, 456
Bsh1236I	CGCG	2 cut(s)	107, 109
BshFI	GGCC	1 cut(s)	386
BslFI	GGGAC	2 cut(s)	311, 373
BslI	CCNNNNNNNGG	1 cut(s)	393
BsmAI	GTCTC	1 cut(s)	420
BsmFI	GGGAC	2 cut(s)	311, 373
BsmI	GAATGC	1 cut(s)	85
BsnI	GGCC	1 cut(s)	386
Bsp143I	GATC	3 cut(s)	124, 217, 434
BspACI	CCGC	3 cut(s)	105, 109, 196
BspANI	GGCC	1 cut(s)	386
BspFNI	CGCG	2 cut(s)	107, 109
BspHI	TCATGA	1 cut(s)	344
BspMI	ACCTGC	1 cut(s)	203
BspQI	GCTCTTC	1 cut(s)	45
BsrBI	CCGCTC	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	305
BssMI	GATC	3 cut(s)	124, 217, 434
Bst4CI	ACNGT	3 cut(s)	150, 188, 281
Bst6I	CTCTTC	1 cut(s)	45
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	4 cut(s)	207, 363, 448, 467
BstF5I	GGATG	1 cut(s)	181
BstFNI	CGCG	2 cut(s)	107, 109
BstHHI	GCGC	2 cut(s)	109, 308
BstKTI	GATC	3 cut(s)	127, 220, 437
BstMAI	GTCTC	1 cut(s)	420
BstMBI	GATC	3 cut(s)	124, 217, 434
BstMWI	GCNNNNNNNGC	1 cut(s)	109
BstUI	CGCG	2 cut(s)	107, 109
BstV1I	GCAGC	2 cut(s)	215, 456
BstV2I	GAAGAC	1 cut(s)	121
BstX2I	RGATCY	1 cut(s)	434
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	434
BsuRI	GGCC	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	227
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	105
CciI	TCATGA	1 cut(s)	344
CfoI	GCGC	2 cut(s)	109, 308
Cfr13I	GGNCC	1 cut(s)	384
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	1 cut(s)	490
CviAII	CATG	4 cut(s)	56, 200, 309, 345
CviJI	RGCY	8 cut(s)	30, 95, 122, 228, 275, 337, 386, 447
CviKI_1	RGCY	8 cut(s)	30, 95, 122, 228, 275, 337, 386, 447
CviQI	GTAC	1 cut(s)	490
DdeI	CTNAG	4 cut(s)	207, 363, 448, 467
DpnI	GATC	3 cut(s)	126, 219, 436
DpnII	GATC	3 cut(s)	124, 217, 434
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	409
EcoO109I	RGGNCCY	1 cut(s)	384
FaeI	CATG	4 cut(s)	59, 203, 312, 348
FalI	AAGNNNNNCTT	2 cut(s)	225, 257
FaqI	GGGAC	2 cut(s)	311, 373
FatI	CATG	4 cut(s)	55, 199, 308, 344
FauI	CCCGC	1 cut(s)	112
FbaI	TGATCA	2 cut(s)	124, 217
FblI	GTMKAC	1 cut(s)	163
Fnu4HI	GCNGC	4 cut(s)	110, 197, 229, 445
FokI	GGATG	1 cut(s)	188
Fsp4HI	GCNGC	4 cut(s)	110, 197, 229, 445
FspAI	RTGCGCAY	1 cut(s)	307
FspBI	CTAG	1 cut(s)	294
FspI	TGCGCA	1 cut(s)	307
GlaI	GCGC	2 cut(s)	108, 307
GluI	GCNGC	4 cut(s)	110, 197, 229, 445
HaeIII	GGCC	1 cut(s)	386
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	2 cut(s)	109, 308
Hin1II	CATG	4 cut(s)	59, 203, 312, 348
Hin6I	GCGC	2 cut(s)	107, 306
HinP1I	GCGC	2 cut(s)	107, 306
HincII	GTYRAC	2 cut(s)	164, 239
HindII	GTYRAC	2 cut(s)	164, 239
HinfI	GANTC	2 cut(s)	68, 463
HphI	GGTGA	4 cut(s)	167, 227, 419, 438
Hpy166II	GTNNAC	2 cut(s)	164, 239
Hpy188III	TCNNGA	2 cut(s)	345, 379
Hpy8I	GTNNAC	2 cut(s)	164, 239
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	4 cut(s)	53, 152, 165, 227
HpyCH4III	ACNGT	3 cut(s)	150, 188, 281
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	2 cut(s)	36, 444
HpyF10VI	GCNNNNNNNGC	1 cut(s)	109
HpyF3I	CTNAG	4 cut(s)	207, 363, 448, 467
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	59, 203, 312, 348
HspAI	GCGC	2 cut(s)	107, 306
Ksp22I	TGATCA	2 cut(s)	124, 217
Kzo9I	GATC	3 cut(s)	124, 217, 434
LguI	GCTCTTC	1 cut(s)	45
LpnPI	CCDG	6 cut(s)	81, 198, 286, 364, 400, 468
Lsp1109I	GCAGC	2 cut(s)	215, 456
LweI	GCATC	1 cut(s)	23
MaeI	CTAG	1 cut(s)	294
MaeII	ACGT	1 cut(s)	166
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	3 cut(s)	126, 219, 436
MbiI	CCGCTC	1 cut(s)	196
MboI	GATC	3 cut(s)	124, 217, 434
MboII	GAAGA	6 cut(s)	21, 62, 126, 191, 490, 493
MflI	RGATCY	1 cut(s)	434
MlyI	GAGTC	2 cut(s)	62, 472
MnlI	CCTC	3 cut(s)	153, 218, 375
MseI	TTAA	2 cut(s)	19, 439
MslI	CAYNNNNRTG	3 cut(s)	60, 266, 349
Mva1269I	GAATGC	1 cut(s)	85
MvnI	CGCG	2 cut(s)	107, 109
MwoI	GCNNNNNNNGC	1 cut(s)	109
NdeII	GATC	3 cut(s)	124, 217, 434
NlaIII	CATG	4 cut(s)	59, 203, 312, 348
NsbI	TGCGCA	1 cut(s)	307
PagI	TCATGA	1 cut(s)	344
PaqCI	CACCTGC	1 cut(s)	203
PciSI	GCTCTTC	1 cut(s)	45
PcsI	WCGNNNNNNNCGW	1 cut(s)	22
PctI	GAATGC	1 cut(s)	85
PkrI	GCNGC	4 cut(s)	111, 198, 230, 446
PleI	GAGTC	2 cut(s)	62, 471
PpsI	GAGTC	2 cut(s)	62, 471
PspPI	GGNCC	1 cut(s)	384
PsuI	RGATCY	1 cut(s)	434
RsaI	GTAC	1 cut(s)	491
RsaNI	GTAC	1 cut(s)	490
RseI	CAYNNNNRTG	3 cut(s)	60, 266, 349
SalI	GTCGAC	1 cut(s)	162
SapI	GCTCTTC	1 cut(s)	45
SaqAI	TTAA	2 cut(s)	19, 439
SatI	GCNGC	4 cut(s)	110, 197, 229, 445
Sau3AI	GATC	3 cut(s)	124, 217, 434
Sau96I	GGNCC	1 cut(s)	384
SchI	GAGTC	2 cut(s)	62, 472
SfaNI	GCATC	1 cut(s)	23
SmiMI	CAYNNNNRTG	3 cut(s)	60, 266, 349
SsiI	CCGC	3 cut(s)	105, 109, 196
SspMI	CTAG	1 cut(s)	294
TaaI	ACNGT	3 cut(s)	150, 188, 281
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	1 cut(s)	163
TaqII	GACCGA	1 cut(s)	408
TatI	WGTACW	1 cut(s)	489
TauI	GCSGC	2 cut(s)	112, 199
Tru1I	TTAA	2 cut(s)	19, 439
Tru9I	TTAA	2 cut(s)	19, 439
TscAI	CASTG	1 cut(s)	227
TseI	GCWGC	2 cut(s)	228, 444
TspDTI	ATGAA	4 cut(s)	72, 192, 333, 493
TspGWI	ACGGA	1 cut(s)	18
TspRI	CASTG	1 cut(s)	227
XmiI	GTMKAC	1 cut(s)	163
XspI	CTAG	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.