Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0024476

Physical Location & Seq

Genomic Coordinates Reverse (-)

24352598 .. 24353580

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1168800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCATTGCACCATGGAAAACTCACAAAGTCTCTTCCTCATCGGACTTGTGTTGCTGATCGACTACTCGTGTTTTCTTCCGTCTTCCGCATCGTTTTCTAACGATACCGATCAACATGCCCTTCTGGCAATCAAATCTCAACTCACTTACCCTGCCAATGGTGTCCTGGCCGGTAATTGGACCATTAGAACAAGCTTTTGTGATTGGATCGGGGTCTCTTGCAGTAAGCGCAGGCAAAGAGTGACGGCCTTGGACCTTTCCTATATGGACCTTCATGGCATGATTTCTCCTCACGTGGGTAACCTCTCTTTCCTCGTCTCGCTTCGTCTCCAGAACAACAGCTTATATGGATTCGTGCCCCATGAAATCGGTCGTTTACATCGCTTGAGGATACTTGCACTTCAAGACAACCAGCTGCAAGGAAGCGTCCCTCCAACCCTACATCACTGCCAGAAGCTCAAGGTCATAAACCTTAGGAGAAACATGTTAAGCGGTCTCGTACCCAAAGAGCTGGGTTCTTTACCCATGCTTCAGCGACTGTATCTCACTGCAAACAATCTTTCGGGTGGAATTCCGACATCTTTGGGTAACATTTCAACATTACATGAATTGTTCTTGGACCAGAACAGCCTCACAGGTTCATTCCCCTCTACTCTCCTCAACCTATCTTCTCTTGTTTTTATTATCTACGATCAAATGACAATATTTTCGGAAATCTTCCCGGGGATCTTTGCCACTACTGGCCTAATATCCGAGAAATTTCTCTTTCTCGCAACAGCTTCAGTGGCCCGTTCCCTGGTGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

269

Amino Acids

29.67

Weight (kDa)

8.87

Isoelectric Point (pI)

47.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	35 - 75	1.1e-07	Leucine rich repeat N-terminal domain
LRR_14	PF23598	84 - 183	1.5e-06	Leucine-rich repeat region
LRR_8	PF13855	134 - 187	2.5e-08	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024476)

Species	Orthologous Gene IDs
malus_domestica	MD07G1168800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0403121 RchiOBHm_Chr4g0403151

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	87, 492
AclWI	GGATC	2 cut(s)	215, 734
AcoI	YGGCCR	1 cut(s)	168
AcsI	RAATTY	2 cut(s)	570, 758
AcuI	CTGAAG	2 cut(s)	515, 765
AcvI	CACGTG	1 cut(s)	295
AfaI	GTAC	1 cut(s)	501
AfiI	CCNNNNNNNGG	4 cut(s)	158, 177, 296, 796
AflIII	ACRYGT	1 cut(s)	483
AgsI	TTSAA	2 cut(s)	404, 597
AjnI	CCWGG	2 cut(s)	165, 795
AluBI	AGCT	6 cut(s)	195, 342, 415, 457, 511, 779
AluI	AGCT	6 cut(s)	195, 342, 415, 457, 511, 779
Alw26I	GTCTC	5 cut(s)	35, 220, 322, 332, 500
AlwI	GGATC	2 cut(s)	215, 734
AlwNI	CAGNNNCTG	1 cut(s)	538
Ama87I	CYCGRG	1 cut(s)	721
AoxI	GGCC	4 cut(s)	168, 246, 742, 786
ApeKI	GCWGC	1 cut(s)	415
ApoI	RAATTY	2 cut(s)	570, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	691, 723
AspLEI	GCGC	1 cut(s)	231
AspS9I	GGNCC	5 cut(s)	180, 253, 268, 619, 787
AsuC2I	CCSGG	2 cut(s)	722, 723
AvaI	CYCGRG	1 cut(s)	721
AvaII	GGWCC	4 cut(s)	180, 253, 268, 619
AxyI	CCTNAGG	1 cut(s)	473
BaeGI	GKGCMC	1 cut(s)	360
BauI	CACGAG	1 cut(s)	67
BbrPI	CACGTG	1 cut(s)	295
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	1 cut(s)	402
BceAI	ACGGC	1 cut(s)	261
BcgI	CGANNNNNNTGC	2 cut(s)	98, 132
BciT130I	CCWGG	2 cut(s)	167, 797
BciVI	GTATCC	1 cut(s)	384
BcnI	CCSGG	2 cut(s)	722, 723
BcoDI	GTCTC	5 cut(s)	35, 220, 322, 332, 500
BfuI	GTATCC	1 cut(s)	384
BglI	GCCNNNNNGGC	1 cut(s)	125
BisI	GCNGC	1 cut(s)	416
BlsI	GCNGC	1 cut(s)	417
Bme1390I	CCNGG	4 cut(s)	167, 722, 723, 797
Bme18I	GGWCC	4 cut(s)	180, 253, 268, 619
BmeT110I	CYCGRG	1 cut(s)	721
BmgT120I	GGNCC	5 cut(s)	180, 253, 268, 619, 787
BmrFI	CCNGG	4 cut(s)	167, 722, 723, 797
BmsI	GCATC	1 cut(s)	98
BpiI	GAAGAC	1 cut(s)	75
BpmI	CTGGAG	1 cut(s)	314
BpuEI	CTTGAG	2 cut(s)	406, 443
BpuMI	CCSGG	2 cut(s)	722, 723
BsaAI	YACGTR	1 cut(s)	295
BsaBI	GATNNNNATC	1 cut(s)	108
BsaI	GGTCTC	2 cut(s)	220, 500
BsaJI	CCNNGG	5 cut(s)	12, 249, 721, 722, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 177, 296, 796
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	745
Bse21I	CCTNAGG	1 cut(s)	473
Bse3DI	GCAATG	1 cut(s)	4
Bse8I	GATNNNNATC	1 cut(s)	108
BseBI	CCWGG	2 cut(s)	167, 797
BseDI	CCNNGG	5 cut(s)	12, 249, 721, 722, 795
BseJI	GATNNNNATC	1 cut(s)	108
BseLI	CCNNNNNNNGG	4 cut(s)	158, 177, 296, 796
BseMI	GCAATG	1 cut(s)	4
BseNI	ACTGG	1 cut(s)	745
BseRI	GAGGAG	2 cut(s)	279, 647
BseSI	GKGCMC	1 cut(s)	360
BseXI	GCAGC	1 cut(s)	402
BseYI	CCCAGC	1 cut(s)	511
Bsh1285I	CGRYCG	1 cut(s)	373
BshFI	GGCC	4 cut(s)	170, 248, 744, 788
BsiEI	CGRYCG	1 cut(s)	373
BsiHKCI	CYCGRG	1 cut(s)	721
BsiSI	CCGG	2 cut(s)	171, 722
BslFI	GGGAC	1 cut(s)	413
BslI	CCNNNNNNNGG	4 cut(s)	158, 177, 296, 796
BsmAI	GTCTC	5 cut(s)	35, 220, 322, 332, 500
BsmBI	CGTCTC	2 cut(s)	322, 332
BsmFI	GGGAC	1 cut(s)	413
BsnI	GGCC	4 cut(s)	170, 248, 744, 788
Bso31I	GGTCTC	2 cut(s)	220, 500
BsoBI	CYCGRG	1 cut(s)	721
Bsp1286I	GDGCHC	1 cut(s)	360
Bsp143I	GATC	5 cut(s)	57, 109, 207, 691, 726
Bsp19I	CCATGG	1 cut(s)	12
BspACI	CCGC	2 cut(s)	87, 492
BspANI	GGCC	4 cut(s)	170, 248, 744, 788
BspPI	GGATC	2 cut(s)	215, 734
BspTNI	GGTCTC	2 cut(s)	220, 500
BsrDI	GCAATG	1 cut(s)	4
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	745
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	5 cut(s)	12, 249, 721, 722, 795
BssMI	GATC	5 cut(s)	57, 109, 207, 691, 726
BssSI	CACGAG	1 cut(s)	67
BssT1I	CCWWGG	2 cut(s)	12, 249
Bst2BI	CACGAG	1 cut(s)	67
Bst2UI	CCWGG	2 cut(s)	167, 797
Bst4CI	ACNGT	1 cut(s)	540
Bst6I	CTCTTC	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	233
BstDEI	CTNAG	1 cut(s)	473
BstDSI	CCRYGG	1 cut(s)	12
BstEII	GGTNACC	1 cut(s)	299
BstHHI	GCGC	1 cut(s)	231
BstKTI	GATC	5 cut(s)	60, 112, 210, 694, 729
BstMAI	GTCTC	5 cut(s)	35, 220, 322, 332, 500
BstMBI	GATC	5 cut(s)	57, 109, 207, 691, 726
BstMCI	CGRYCG	1 cut(s)	373
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 228, 785
BstNI	CCWGG	2 cut(s)	167, 797
BstNSI	RCATGY	2 cut(s)	119, 487
BstPI	GGTNACC	1 cut(s)	299
BstSCI	CCNGG	4 cut(s)	165, 720, 721, 795
BstSLI	GKGCMC	1 cut(s)	360
BstV1I	GCAGC	1 cut(s)	402
BstV2I	GAAGAC	1 cut(s)	75
BstX2I	RGATCY	1 cut(s)	726
BstXI	CCANNNNNNTGG	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	726
Bsu36I	CCTNAGG	1 cut(s)	473
BsuI	GTATCC	1 cut(s)	384
BsuRI	GGCC	4 cut(s)	170, 248, 744, 788
BtgI	CCRYGG	1 cut(s)	12
BtgZI	GCGATG	1 cut(s)	365
BtsI	GCAGTG	2 cut(s)	445, 546
BtsIMutI	CAGTG	3 cut(s)	445, 546, 789
Cac8I	GCNNGC	1 cut(s)	233
CaiI	CAGNNNCTG	1 cut(s)	538
CfoI	GCGC	1 cut(s)	231
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	5 cut(s)	180, 253, 268, 619, 787
Cfr9I	CCCGGG	1 cut(s)	721
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	500
CviAII	CATG	8 cut(s)	13, 116, 275, 280, 362, 484, 526, 605
CviQI	GTAC	1 cut(s)	500
DdeI	CTNAG	1 cut(s)	473
DpnI	GATC	5 cut(s)	59, 111, 209, 693, 728
DpnII	GATC	5 cut(s)	57, 109, 207, 691, 726
EaeI	YGGCCR	1 cut(s)	168
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco130I	CCWWGG	2 cut(s)	12, 249
Eco31I	GGTCTC	2 cut(s)	220, 500
Eco47I	GGWCC	4 cut(s)	180, 253, 268, 619
Eco57I	CTGAAG	2 cut(s)	515, 765
Eco72I	CACGTG	1 cut(s)	295
Eco81I	CCTNAGG	1 cut(s)	473
Eco88I	CYCGRG	1 cut(s)	721
Eco91I	GGTNACC	1 cut(s)	299
EcoO65I	GGTNACC	1 cut(s)	299
EcoRI	GAATTC	1 cut(s)	570
EcoRII	CCWGG	2 cut(s)	165, 795
EcoT14I	CCWWGG	2 cut(s)	12, 249
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	2 cut(s)	12, 249
Esp3I	CGTCTC	2 cut(s)	322, 332
FaeI	CATG	8 cut(s)	16, 119, 278, 283, 365, 487, 529, 608
FaqI	GGGAC	1 cut(s)	413
FatI	CATG	8 cut(s)	12, 115, 274, 279, 361, 483, 525, 604
Fnu4HI	GCNGC	1 cut(s)	416
Fsp4HI	GCNGC	1 cut(s)	416
GlaI	GCGC	1 cut(s)	230
GluI	GCNGC	1 cut(s)	416
GsaI	CCCAGC	1 cut(s)	515
GsuI	CTGGAG	1 cut(s)	314
HaeIII	GGCC	4 cut(s)	170, 248, 744, 788
HapII	CCGG	2 cut(s)	171, 722
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	231
Hin1II	CATG	8 cut(s)	16, 119, 278, 283, 365, 487, 529, 608
Hin6I	GCGC	1 cut(s)	229
HinP1I	GCGC	1 cut(s)	229
HindIII	AAGCTT	1 cut(s)	193
HinfI	GANTC	1 cut(s)	351
HpaII	CCGG	2 cut(s)	171, 722
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	4 cut(s)	44, 576, 712, 754
Hpy188III	TCNNGA	2 cut(s)	331, 404
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	2 cut(s)	131, 281
HpyCH4III	ACNGT	1 cut(s)	540
HpyCH4IV	ACGT	1 cut(s)	294
HpyCH4V	TGCA	6 cut(s)	4, 9, 222, 398, 418, 551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 228, 785
HpyF3I	CTNAG	1 cut(s)	473
HpySE526I	ACGT	1 cut(s)	294
Hsp92II	CATG	8 cut(s)	16, 119, 278, 283, 365, 487, 529, 608
HspAI	GCGC	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	57, 109, 207, 691, 726
Lsp1109I	GCAGC	1 cut(s)	402
LweI	GCATC	1 cut(s)	98
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	3 cut(s)	241, 299, 587
MalI	GATC	5 cut(s)	59, 111, 209, 693, 728
MboI	GATC	5 cut(s)	57, 109, 207, 691, 726
MboII	GAAGA	5 cut(s)	25, 68, 75, 660, 709
MflI	RGATCY	1 cut(s)	726
MhlI	GDGCHC	1 cut(s)	360
MluCI	AATT	4 cut(s)	175, 570, 608, 758
MmeI	TCCRAC	2 cut(s)	458, 599
MnlI	CCTC	9 cut(s)	47, 300, 314, 323, 381, 441, 641, 658, 668
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	488
MspA1I	CMGCKG	1 cut(s)	415
MspI	CCGG	2 cut(s)	171, 722
MspR9I	CCNGG	4 cut(s)	167, 722, 723, 797
MvaI	CCWGG	2 cut(s)	167, 797
MwoI	GCNNNNNNNGC	3 cut(s)	125, 228, 785
NciI	CCSGG	2 cut(s)	722, 723
NcoI	CCATGG	1 cut(s)	12
NdeII	GATC	5 cut(s)	57, 109, 207, 691, 726
NlaIII	CATG	8 cut(s)	16, 119, 278, 283, 365, 487, 529, 608
NmuCI	GTSAC	1 cut(s)	241
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	2 cut(s)	119, 487
PciI	ACATGT	1 cut(s)	483
PfeI	GAWTC	1 cut(s)	351
PkrI	GCNGC	1 cut(s)	417
PmaCI	CACGTG	1 cut(s)	295
PmlI	CACGTG	1 cut(s)	295
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	483
Psp6I	CCWGG	2 cut(s)	165, 795
PspCI	CACGTG	1 cut(s)	295
PspEI	GGTNACC	1 cut(s)	299
PspFI	CCCAGC	1 cut(s)	511
PspGI	CCWGG	2 cut(s)	165, 795
PspPI	GGNCC	5 cut(s)	180, 253, 268, 619, 787
PstNI	CAGNNNCTG	1 cut(s)	538
PsuI	RGATCY	1 cut(s)	726
PvuII	CAGCTG	1 cut(s)	415
RsaI	GTAC	1 cut(s)	501
RsaNI	GTAC	1 cut(s)	500
SaqAI	TTAA	1 cut(s)	488
SatI	GCNGC	1 cut(s)	416
Sau3AI	GATC	5 cut(s)	57, 109, 207, 691, 726
Sau96I	GGNCC	5 cut(s)	180, 253, 268, 619, 787
ScrFI	CCNGG	4 cut(s)	167, 722, 723, 797
SduI	GDGCHC	1 cut(s)	360
SfaNI	GCATC	1 cut(s)	98
SinI	GGWCC	4 cut(s)	180, 253, 268, 619
SmaI	CCCGGG	1 cut(s)	723
SmlI	CTYRAG	2 cut(s)	385, 458
SmoI	CTYRAG	2 cut(s)	385, 458
Sse9I	AATT	4 cut(s)	175, 570, 608, 758
SsiI	CCGC	2 cut(s)	87, 492
SspI	AATATT	1 cut(s)	705
StyD4I	CCNGG	4 cut(s)	165, 720, 721, 795
StyI	CCWWGG	2 cut(s)	12, 249
TaaI	ACNGT	1 cut(s)	540
TaiI	ACGT	1 cut(s)	297
TaqI	TCGA	1 cut(s)	60
TaqII	GACCGA	1 cut(s)	359
TasI	AATT	4 cut(s)	175, 570, 608, 758
TfiI	GAWTC	1 cut(s)	351
Tru1I	TTAA	1 cut(s)	488
Tru9I	TTAA	1 cut(s)	488
TscAI	CASTG	3 cut(s)	452, 553, 789
TseFI	GTSAC	1 cut(s)	241
TseI	GCWGC	1 cut(s)	415
Tsp45I	GTSAC	1 cut(s)	241
TspDTI	ATGAA	4 cut(s)	263, 378, 621, 630
TspGWI	ACGGA	1 cut(s)	69
TspMI	CCCGGG	1 cut(s)	721
TspRI	CASTG	3 cut(s)	452, 553, 789
VpaK11BI	GGWCC	4 cut(s)	180, 253, 268, 619
XapI	RAATTY	2 cut(s)	570, 758
XceI	RCATGY	2 cut(s)	119, 487
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmaI	CCCGGG	1 cut(s)	721
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.