Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0024484

Physical Location & Seq

Genomic Coordinates Forward (+)

32700078 .. 32710616

Gene Structure 10539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1261400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAAAGAGAGTTTCAAAGGGGATATTTTGCCCGCCATACACCCGGATAGCGTGCGGGTTCGGTTGATTTCCAAGGATATAATTGAGGCTTTGCAGAGAGGGTTGAGCCATGAGGTGACCTGGACTGATGTGGACTATGCGTCTGGTAAAGTGGAGCCGGCGCATGAAGGTGGTGGGAAGGATACTTTGATGGCACTGCATGACGCTCCGGAGCAGGGGAAGTGGTCCCGTGAGGATGAAATTCTTGATGATCAGTGGATTGAGAAGAGTAGGACGACGAGTAGGGAGAGAGGTTTGAAAGCTGCCACTTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

105

Amino Acids

11.67

Weight (kDa)

5.32

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024484)

Species	Orthologous Gene IDs
malus_domestica	MD07G1261400.v1.1
pyrus_communis	pycom07g23430 pycom07g23580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	2 cut(s)	33, 55
AcsI	RAATTY	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	2 cut(s)	16, 298
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	119
AluBI	AGCT	1 cut(s)	302
AluI	AGCT	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	208
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	240
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	289
BccI	CCATC	1 cut(s)	184
BciT130I	CCWGG	1 cut(s)	121
BciVI	GTATCC	1 cut(s)	175
BclI	TGATCA	1 cut(s)	250
BcnI	CCSGG	1 cut(s)	44
BfuI	GTATCC	1 cut(s)	175
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	2 cut(s)	44, 121
Bme18I	GGWCC	1 cut(s)	225
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	156, 227
BmrFI	CCNGG	2 cut(s)	44, 121
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse118I	RCCGGY	1 cut(s)	157
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	289
BsiSI	CCGG	3 cut(s)	44, 158, 209
BslFI	GGGAC	1 cut(s)	211
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmFI	GGGAC	1 cut(s)	211
Bsp13I	TCCGGA	1 cut(s)	208
Bsp143I	GATC	1 cut(s)	250
BspACI	CCGC	2 cut(s)	33, 55
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	156, 227
BsrFI	RCCGGY	1 cut(s)	157
BssAI	RCCGGY	1 cut(s)	157
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	1 cut(s)	250
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	121
Bst6I	CTCTTC	1 cut(s)	260
BstC8I	GCNNGC	3 cut(s)	33, 53, 159
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	163
BstKTI	GATC	1 cut(s)	253
BstMBI	GATC	1 cut(s)	250
BstNI	CCWGG	1 cut(s)	121
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	42, 119
BstV1I	GCAGC	1 cut(s)	289
BsuI	GTATCC	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	2 cut(s)	194, 260
Cac8I	GCNNGC	3 cut(s)	33, 53, 159
CfoI	GCGC	1 cut(s)	163
Cfr10I	RCCGGY	1 cut(s)	157
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	2 cut(s)	129, 212
CviAII	CATG	3 cut(s)	110, 164, 200
CviJI	RGCY	4 cut(s)	89, 108, 157, 302
CviKI_1	RGCY	4 cut(s)	89, 108, 157, 302
DpnI	GATC	1 cut(s)	252
DpnII	GATC	1 cut(s)	250
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	260
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	260
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	3 cut(s)	113, 167, 203
FaiI	YATR	6 cut(s)	38, 80, 111, 138, 165, 201
FaqI	GGGAC	1 cut(s)	211
FatI	CATG	3 cut(s)	109, 163, 199
FauI	CCCGC	2 cut(s)	40, 48
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	303
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	303
HapII	CCGG	3 cut(s)	44, 158, 209
HgaI	GACGC	2 cut(s)	129, 212
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	3 cut(s)	113, 167, 203
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HpaII	CCGG	3 cut(s)	44, 158, 209
HphI	GGTGA	1 cut(s)	127
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188III	TCNNGA	2 cut(s)	209, 245
Hpy8I	GTNNAC	1 cut(s)	133
Hpy99I	CGWCG	1 cut(s)	280
HpyAV	CCTTC	2 cut(s)	161, 172
HpyCH4V	TGCA	2 cut(s)	94, 199
Hsp92II	CATG	3 cut(s)	113, 167, 203
HspAI	GCGC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	208
KroI	GCCGGC	1 cut(s)	157
KroNI	GCCGGC	1 cut(s)	159
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	1 cut(s)	250
LmnI	GCTCC	3 cut(s)	154, 211, 211
LpnPI	CCDG	7 cut(s)	57, 106, 129, 133, 171, 200, 222
Lsp1109I	GCAGC	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	1 cut(s)	252
MboI	GATC	1 cut(s)	250
MboII	GAAGA	1 cut(s)	277
MluCI	AATT	2 cut(s)	81, 240
MnlI	CCTC	5 cut(s)	79, 92, 106, 226, 284
MroI	TCCGGA	1 cut(s)	208
MroNI	GCCGGC	1 cut(s)	157
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	3 cut(s)	44, 158, 209
MspR9I	CCNGG	2 cut(s)	44, 121
MvaI	CCWGG	1 cut(s)	121
NaeI	GCCGGC	1 cut(s)	159
NciI	CCSGG	1 cut(s)	44
NdeII	GATC	1 cut(s)	250
NgoMIV	GCCGGC	1 cut(s)	157
NlaIII	CATG	3 cut(s)	113, 167, 203
NlaIV	GGNNCC	2 cut(s)	156, 227
NmuCI	GTSAC	1 cut(s)	115
PdiI	GCCGGC	1 cut(s)	159
PkrI	GCNGC	1 cut(s)	304
Psp6I	CCWGG	1 cut(s)	119
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	156, 227
PspPI	GGNCC	1 cut(s)	225
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	1 cut(s)	250
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	44, 121
SetI	ASST	5 cut(s)	117, 122, 172, 295, 304
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	81, 240
SsiI	CCGC	2 cut(s)	33, 55
StyD4I	CCNGG	2 cut(s)	42, 119
StyI	CCWWGG	1 cut(s)	72
TasI	AATT	2 cut(s)	81, 240
TscAI	CASTG	2 cut(s)	201, 260
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	3 cut(s)	17, 180, 252
TspRI	CASTG	2 cut(s)	201, 260
VpaK11BI	GGWCC	1 cut(s)	225
XapI	RAATTY	1 cut(s)	240

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.