Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0024484

Physical Location & Seq

Genomic Coordinates Forward (+)

24450060 .. 24450314

Gene Structure 255 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g23580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGAAAGAGAGTTTCAAAGGGGACATTTTGCCCGCCACACACCGGGATAGCGTGCGGCTTCGGTTGATTGCCAAGGATATAATTGAGGCTTTGCAGAGAGGGTTGAGCCATCAGGTGACCTGGACTGACGTGGAGTATGCGTCCGGTAAAGTGGAGCCAGCGCATGAAGGTGGTGGGAAGGGTACTTTGATGGCACTGCAGGACGCTCCGGAGGAGGGGAATTGGTCCCGTGAGGATGAGATTCTTGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006508 GO:0006515 GO:0006807 GO:0006996 GO:0007005 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009056 GO:0009057 GO:0009987 GO:0016020 GO:0016043 GO:0016787 GO:0019538 GO:0019866 GO:0023052 GO:0030163 GO:0031090 GO:0031929 GO:0031966 GO:0031967 GO:0031975 GO:0035556 GO:0035694 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051603 GO:0051716 GO:0065007 GO:0070011 GO:0071704 GO:0071840 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M48

Protein Analysis

85

Amino Acids

9.33

Weight (kDa)

4.82

Isoelectric Point (pI)

50.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024484)

Species	Orthologous Gene IDs
malus_domestica	MD07G1261400.v1.1
pyrus_communis	pycom07g23430 pycom07g23580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	208
AciI	CCGC	2 cut(s)	33, 55
AfaI	GTAC	1 cut(s)	184
AfiI	CCNNNNNNNGG	2 cut(s)	42, 215
AgsI	TTSAA	1 cut(s)	16
AjiI	CACGTC	1 cut(s)	130
AjnI	CCWGG	1 cut(s)	119
Aor13HI	TCCGGA	1 cut(s)	208
AspLEI	GCGC	1 cut(s)	163
AspS9I	GGNCC	1 cut(s)	225
AsuC2I	CCSGG	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	127
AvaII	GGWCC	1 cut(s)	225
BccI	CCATC	2 cut(s)	117, 184
BciT130I	CCWGG	1 cut(s)	121
BcnI	CCSGG	1 cut(s)	44
BfmI	CTRYAG	1 cut(s)	197
BisI	GCNGC	1 cut(s)	56
BlsI	GCNGC	1 cut(s)	57
Bme1390I	CCNGG	2 cut(s)	44, 121
Bme18I	GGWCC	1 cut(s)	225
BmgBI	CACGTC	1 cut(s)	130
BmgT120I	GGNCC	1 cut(s)	225
BmiI	GGNNCC	2 cut(s)	156, 227
BmrFI	CCNGG	2 cut(s)	44, 121
BpuMI	CCSGG	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	2 cut(s)	143, 208
BsaXI	ACNNNNNCTCC	2 cut(s)	125, 155
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 215
BseAI	TCCGGA	1 cut(s)	208
BseBI	CCWGG	1 cut(s)	121
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	2 cut(s)	42, 215
BseRI	GAGGAG	1 cut(s)	227
BsiSI	CCGG	3 cut(s)	43, 144, 209
BslFI	GGGAC	2 cut(s)	35, 211
BslI	CCNNNNNNNGG	2 cut(s)	42, 215
BsmFI	GGGAC	2 cut(s)	35, 211
Bsp13I	TCCGGA	1 cut(s)	208
BspACI	CCGC	2 cut(s)	33, 55
BspEI	TCCGGA	1 cut(s)	208
BspLI	GGNNCC	2 cut(s)	156, 227
BspMAI	CTGCAG	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	121
BstC8I	GCNNGC	3 cut(s)	33, 53, 159
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	163
BstNI	CCWGG	1 cut(s)	121
BstPI	GGTNACC	1 cut(s)	115
BstSCI	CCNGG	2 cut(s)	42, 119
BstSFI	CTRYAG	1 cut(s)	197
BtrI	CACGTC	1 cut(s)	130
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	194
BtsIMutI	CAGTG	1 cut(s)	194
Cac8I	GCNNGC	3 cut(s)	33, 53, 159
CfoI	GCGC	1 cut(s)	163
Cfr13I	GGNCC	1 cut(s)	225
CseI	GACGC	2 cut(s)	129, 212
Csp6I	GTAC	1 cut(s)	183
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	4 cut(s)	58, 89, 108, 157
CviKI_1	RGCY	4 cut(s)	58, 89, 108, 157
CviQI	GTAC	1 cut(s)	183
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	225
Eco91I	GGTNACC	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	115
EcoRII	CCWGG	1 cut(s)	119
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	1 cut(s)	167
FaiI	YATR	3 cut(s)	80, 138, 165
FaqI	GGGAC	2 cut(s)	35, 211
FatI	CATG	1 cut(s)	163
FauI	CCCGC	1 cut(s)	40
Fnu4HI	GCNGC	1 cut(s)	56
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	56
GlaI	GCGC	1 cut(s)	162
GluI	GCNGC	1 cut(s)	56
HapII	CCGG	3 cut(s)	43, 144, 209
HgaI	GACGC	2 cut(s)	129, 212
HhaI	GCGC	1 cut(s)	163
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	161
HinP1I	GCGC	1 cut(s)	161
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	3 cut(s)	43, 144, 209
HphI	GGTGA	1 cut(s)	127
Hpy188III	TCNNGA	2 cut(s)	209, 245
HpyAV	CCTTC	2 cut(s)	161, 172
HpyCH4IV	ACGT	1 cut(s)	129
HpyCH4V	TGCA	2 cut(s)	94, 199
HpySE526I	ACGT	1 cut(s)	129
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	161
Kpn2I	TCCGGA	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	154, 211
LpnPI	CCDG	8 cut(s)	56, 98, 106, 133, 157, 171, 185, 222
MaeII	ACGT	1 cut(s)	129
MaeIII	GTNAC	1 cut(s)	115
MluCI	AATT	2 cut(s)	81, 220
MnlI	CCTC	5 cut(s)	79, 92, 205, 208, 226
MroI	TCCGGA	1 cut(s)	208
MslI	CAYNNNNRTG	1 cut(s)	168
MspI	CCGG	3 cut(s)	43, 144, 209
MspR9I	CCNGG	2 cut(s)	44, 121
MvaI	CCWGG	1 cut(s)	121
NciI	CCSGG	1 cut(s)	44
NlaIII	CATG	1 cut(s)	167
NlaIV	GGNNCC	2 cut(s)	156, 227
NmuCI	GTSAC	1 cut(s)	115
PfeI	GAWTC	1 cut(s)	241
PkrI	GCNGC	1 cut(s)	57
Psp6I	CCWGG	1 cut(s)	119
PspEI	GGTNACC	1 cut(s)	115
PspGI	CCWGG	1 cut(s)	119
PspN4I	GGNNCC	2 cut(s)	156, 227
PspPI	GGNCC	1 cut(s)	225
PstI	CTGCAG	1 cut(s)	201
RsaI	GTAC	1 cut(s)	184
RsaNI	GTAC	1 cut(s)	183
RseI	CAYNNNNRTG	1 cut(s)	168
SatI	GCNGC	1 cut(s)	56
Sau96I	GGNCC	1 cut(s)	225
ScrFI	CCNGG	2 cut(s)	44, 121
SetI	ASST	4 cut(s)	117, 122, 132, 172
SfcI	CTRYAG	1 cut(s)	197
SinI	GGWCC	1 cut(s)	225
SmiMI	CAYNNNNRTG	1 cut(s)	168
Sse9I	AATT	2 cut(s)	81, 220
SsiI	CCGC	2 cut(s)	33, 55
StyD4I	CCNGG	2 cut(s)	42, 119
StyI	CCWWGG	1 cut(s)	72
TaiI	ACGT	1 cut(s)	132
TasI	AATT	2 cut(s)	81, 220
TauI	GCSGC	1 cut(s)	58
TfiI	GAWTC	1 cut(s)	241
TscAI	CASTG	1 cut(s)	201
TseFI	GTSAC	1 cut(s)	115
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	17, 180
TspRI	CASTG	1 cut(s)	201
VpaK11BI	GGWCC	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.