Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028655

Physical Location & Seq

Genomic Coordinates Forward (+)

177403 .. 179253

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1001600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGCTTCATGAAACCTTATGCATAATTATTTTGTCTTGGGAGACTTACTTTATGAGACATTGGGTCTTAAAGCCTTCAGCGTTTTGCTTCTCTTGGGTAAATGATGACGGGATAATTCTTGACATAACAATAACTGATCAAGTGTTTATGTGGAAAAGTAGTAGGGGCCTAACTGATAAGGTGGAAGCTGATCATGCTTGTTCTAGTGAAAAGTGCACTTACTACCAAATTGGAGATGTATTTGTTGTGAGAAGACTGGCCAGGTTCATGGTCGTATGTGATGATAATTGCAGAGAAGTTGTTATGGATCCGGCCAATGAGCTTTGGGTCTGCACAATATCTGGGCACTGTTTCGGTAGGCTTCTATCACCGGAAGAAATGGAGTCTGATGCTGTGAGTGGACATCTCCTCTGCCTTGCAATTTGTCGTCATTATACAACAATTTGTCATCAAGTTGCCCCTCAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0019538 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0051603 GO:0070647 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like Herpes_UL92

Protein Analysis

157

Amino Acids

17.94

Weight (kDa)

5.22

Isoelectric Point (pI)

44.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028655)

Species	Orthologous Gene IDs
malus_domestica	MD08G1001600.v1.1
pyrus_communis	pycom08g00100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	302, 315
AcoI	YGGCCR	2 cut(s)	258, 312
AcuI	CTGAAG	1 cut(s)	60
AhdI	GACNNNNNGTC	1 cut(s)	62
AjnI	CCWGG	1 cut(s)	260
AluBI	AGCT	2 cut(s)	188, 322
AluI	AGCT	2 cut(s)	188, 322
Alw21I	GWGCWC	1 cut(s)	218
Alw26I	GTCTC	2 cut(s)	35, 49
Alw44I	GTGCAC	1 cut(s)	214
AlwI	GGATC	2 cut(s)	302, 315
AoxI	GGCC	3 cut(s)	166, 258, 312
ApaLI	GTGCAC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	166
AsuHPI	GGTGA	1 cut(s)	360
BaeGI	GKGCMC	2 cut(s)	218, 348
BalI	TGGCCA	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	259
Bbv12I	GWGCWC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	262
BclI	TGATCA	2 cut(s)	136, 190
BcoDI	GTCTC	2 cut(s)	35, 49
BfaI	CTAG	1 cut(s)	204
Bme1390I	CCNGG	1 cut(s)	262
BmeRI	GACNNNNNGTC	1 cut(s)	62
BmgT120I	GGNCC	1 cut(s)	166
BmiI	GGNNCC	2 cut(s)	167, 309
BmrFI	CCNGG	1 cut(s)	262
BmsI	GCATC	1 cut(s)	379
BpiI	GAAGAC	1 cut(s)	259
BsaWI	WCCGGW	1 cut(s)	370
Bse1I	ACTGG	1 cut(s)	261
BseBI	CCWGG	1 cut(s)	262
BseNI	ACTGG	1 cut(s)	261
BseRI	GAGGAG	1 cut(s)	398
BseSI	GKGCMC	2 cut(s)	218, 348
BsgI	GTGCAG	1 cut(s)	316
BshFI	GGCC	3 cut(s)	168, 260, 314
BsiHKAI	GWGCWC	1 cut(s)	218
BsiSI	CCGG	2 cut(s)	311, 371
BsmAI	GTCTC	2 cut(s)	35, 49
BsnI	GGCC	3 cut(s)	168, 260, 314
Bsp1286I	GDGCHC	2 cut(s)	218, 348
Bsp143I	GATC	3 cut(s)	136, 190, 307
BspANI	GGCC	3 cut(s)	168, 260, 314
BspHI	TCATGA	1 cut(s)	7
BspLI	GGNNCC	2 cut(s)	167, 309
BspPI	GGATC	2 cut(s)	302, 315
BsrI	ACTGG	1 cut(s)	261
BssMI	GATC	3 cut(s)	136, 190, 307
Bst2UI	CCWGG	1 cut(s)	262
Bst4CI	ACNGT	1 cut(s)	350
BstKTI	GATC	3 cut(s)	139, 193, 310
BstMAI	GTCTC	2 cut(s)	35, 49
BstMBI	GATC	3 cut(s)	136, 190, 307
BstMWI	GCNNNNNNNGC	1 cut(s)	194
BstNI	CCWGG	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	260
BstSLI	GKGCMC	2 cut(s)	218, 348
BstV2I	GAAGAC	1 cut(s)	259
BstX2I	RGATCY	1 cut(s)	307
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	1 cut(s)	307
BsuRI	GGCC	3 cut(s)	168, 260, 314
BtsIMutI	CAGTG	1 cut(s)	346
CciI	TCATGA	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	166
CviAII	CATG	3 cut(s)	8, 194, 268
CviJI	RGCY	7 cut(s)	73, 168, 188, 260, 314, 322, 361
CviKI_1	RGCY	7 cut(s)	73, 168, 188, 260, 314, 322, 361
DpnI	GATC	3 cut(s)	138, 192, 309
DpnII	GATC	3 cut(s)	136, 190, 307
DriI	GACNNNNNGTC	1 cut(s)	62
EaeI	YGGCCR	2 cut(s)	258, 312
Eam1105I	GACNNNNNGTC	1 cut(s)	62
Eco57I	CTGAAG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	260
EcoT22I	ATGCAT	1 cut(s)	23
FaeI	CATG	3 cut(s)	11, 197, 271
FatI	CATG	3 cut(s)	7, 193, 267
FbaI	TGATCA	2 cut(s)	136, 190
FspBI	CTAG	1 cut(s)	204
HaeIII	GGCC	3 cut(s)	168, 260, 314
HapII	CCGG	2 cut(s)	311, 371
Hin1II	CATG	3 cut(s)	11, 197, 271
HinfI	GANTC	1 cut(s)	383
HpaII	CCGG	2 cut(s)	311, 371
HphI	GGTGA	1 cut(s)	360
Hpy166II	GTNNAC	2 cut(s)	216, 401
Hpy188I	TCNGA	1 cut(s)	388
Hpy188III	TCNNGA	2 cut(s)	8, 119
Hpy8I	GTNNAC	2 cut(s)	216, 401
HpyAV	CCTTC	1 cut(s)	84
HpyCH4III	ACNGT	1 cut(s)	350
HpyCH4V	TGCA	5 cut(s)	21, 216, 291, 333, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	194
Hsp92II	CATG	3 cut(s)	11, 197, 271
Ksp22I	TGATCA	2 cut(s)	136, 190
Kzo9I	GATC	3 cut(s)	136, 190, 307
LpnPI	CCDG	6 cut(s)	242, 247, 274, 324, 327, 384
LweI	GCATC	1 cut(s)	379
MaeI	CTAG	1 cut(s)	204
MalI	GATC	3 cut(s)	138, 192, 309
MboI	GATC	3 cut(s)	136, 190, 307
MboII	GAAGA	2 cut(s)	264, 386
MflI	RGATCY	1 cut(s)	307
MhlI	GDGCHC	2 cut(s)	218, 348
MlsI	TGGCCA	1 cut(s)	260
MluCI	AATT	6 cut(s)	24, 114, 228, 286, 420, 441
MluNI	TGGCCA	1 cut(s)	260
MlyI	GAGTC	1 cut(s)	392
MnlI	CCTC	2 cut(s)	419, 471
Mox20I	TGGCCA	1 cut(s)	260
Mph1103I	ATGCAT	1 cut(s)	23
MscI	TGGCCA	1 cut(s)	260
MseI	TTAA	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	260
MspI	CCGG	2 cut(s)	311, 371
MspR9I	CCNGG	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	262
MwoI	GCNNNNNNNGC	1 cut(s)	194
NdeII	GATC	3 cut(s)	136, 190, 307
NlaIII	CATG	3 cut(s)	11, 197, 271
NlaIV	GGNNCC	2 cut(s)	167, 309
NsiI	ATGCAT	1 cut(s)	23
PagI	TCATGA	1 cut(s)	7
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	260
PspGI	CCWGG	1 cut(s)	260
PspN4I	GGNNCC	2 cut(s)	167, 309
PspPI	GGNCC	1 cut(s)	166
PsuI	RGATCY	1 cut(s)	307
SaqAI	TTAA	1 cut(s)	68
Sau3AI	GATC	3 cut(s)	136, 190, 307
Sau96I	GGNCC	1 cut(s)	166
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	262
SduI	GDGCHC	2 cut(s)	218, 348
SetI	ASST	5 cut(s)	17, 183, 190, 266, 324
SfaNI	GCATC	1 cut(s)	379
Sse9I	AATT	6 cut(s)	24, 114, 228, 286, 420, 441
SspMI	CTAG	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	260
TaaI	ACNGT	1 cut(s)	350
TasI	AATT	6 cut(s)	24, 114, 228, 286, 420, 441
Tru1I	TTAA	1 cut(s)	68
Tru9I	TTAA	1 cut(s)	68
TscAI	CASTG	1 cut(s)	353
TspDTI	ATGAA	2 cut(s)	24, 256
TspRI	CASTG	1 cut(s)	353
VneI	GTGCAC	1 cut(s)	214
XspI	CTAG	1 cut(s)	204
Zsp2I	ATGCAT	1 cut(s)	23

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.