pycom08g00100

f-box protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
121928 .. 122665
738 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g00100.2

Sequence Viewer

Length: 459 bp
ATGCATAATTGTTTTGTCTTGGTAGACTTACTTTATGAGACATTGGGTCTTAAAGCCTTCAGCGTAAATGATGACGGGATAATTCTTGACACAACAGTAGCTGATCAAGTGTCTATGTGGAAAAGTAGTAGAGGCCTAACTGATAAGGTGGAAGCTGATCATGCTTGTTCTGGTGAAAAGTGCACTTACTTCCAAATTGGAGACGTATTTGTTTGTGAGAAGACTGGCCAGGTTCATGTATGTGATGATAATTGCAGAGAAGTTGTTATCGATCCGGCCAATGAGCTTTGGGTCTGCACAATATCTGGGCACTGTTTCGATGGGTTTCTATCACCGGAAGAAATGGAGTCAGATGCTGTGAGTGGACATCTCCTCTGCCTTGCAATTTGTCGTCATTATACAACAATTTGTCATCAAGTTGCCCCTCAAATTCTTCCTCATGAGATATTTTCTGGTTAA

Protein Analysis

153

Amino Acids

16.81

Weight (kDa)

4.58

Isoelectric Point (pI)

42.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028655)

Species Orthologous Gene IDs
malus_domestica MD08G1001600.v1.1
pyrus_communis pycom08g00100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 24
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 2 cut(s) 226, 276
AcsI RAATTY 1 cut(s) 429
AcuI CTGAAG 1 cut(s) 43
AhdI GACNNNNNGTC 1 cut(s) 45
AjnI CCWGG 1 cut(s) 228
AluBI AGCT 3 cut(s) 101, 155, 286
AluI AGCT 3 cut(s) 101, 155, 286
Alw21I GWGCWC 1 cut(s) 185
Alw26I GTCTC 2 cut(s) 32, 195
Alw44I GTGCAC 1 cut(s) 181
AlwI GGATC 1 cut(s) 266
AlwNI CAGNNNCTG 2 cut(s) 101, 356
AoxI GGCC 3 cut(s) 133, 226, 276
ApaLI GTGCAC 1 cut(s) 181
ApoI RAATTY 1 cut(s) 429
AsuHPI GGTGA 2 cut(s) 185, 324
BaeGI GKGCMC 2 cut(s) 185, 312
BalI TGGCCA 1 cut(s) 228
BbsI GAAGAC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 185
BccI CCATC 1 cut(s) 314
BciT130I CCWGG 1 cut(s) 230
BclI TGATCA 2 cut(s) 103, 157
BcoDI GTCTC 2 cut(s) 32, 195
Bme1390I CCNGG 1 cut(s) 230
BmeRI GACNNNNNGTC 1 cut(s) 45
BmrFI CCNGG 1 cut(s) 230
BmsI GCATC 1 cut(s) 343
BpiI GAAGAC 1 cut(s) 227
Bsa29I ATCGAT 1 cut(s) 270
BsaWI WCCGGW 1 cut(s) 334
Bse1I ACTGG 1 cut(s) 229
BseBI CCWGG 1 cut(s) 230
BseCI ATCGAT 1 cut(s) 270
BseNI ACTGG 1 cut(s) 229
BseRI GAGGAG 1 cut(s) 362
BseSI GKGCMC 2 cut(s) 185, 312
BsgI GTGCAG 1 cut(s) 280
BshFI GGCC 3 cut(s) 135, 228, 278
BshVI ATCGAT 1 cut(s) 270
BsiHKAI GWGCWC 1 cut(s) 185
BsiSI CCGG 2 cut(s) 275, 335
BsmAI GTCTC 2 cut(s) 32, 195
BsmBI CGTCTC 1 cut(s) 195
BsnI GGCC 3 cut(s) 135, 228, 278
Bsp1286I GDGCHC 2 cut(s) 185, 312
Bsp143I GATC 3 cut(s) 103, 157, 271
BspANI GGCC 3 cut(s) 135, 228, 278
BspDI ATCGAT 1 cut(s) 270
BspHI TCATGA 1 cut(s) 439
BspPI GGATC 1 cut(s) 266
BsrI ACTGG 1 cut(s) 229
BssMI GATC 3 cut(s) 103, 157, 271
Bst2UI CCWGG 1 cut(s) 230
Bst4CI ACNGT 2 cut(s) 97, 314
BstKTI GATC 3 cut(s) 106, 160, 274
BstMAI GTCTC 2 cut(s) 32, 195
BstMBI GATC 3 cut(s) 103, 157, 271
BstMWI GCNNNNNNNGC 1 cut(s) 161
BstNI CCWGG 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 228
BstSLI GKGCMC 2 cut(s) 185, 312
BstV2I GAAGAC 1 cut(s) 227
Bsu15I ATCGAT 1 cut(s) 270
BsuRI GGCC 3 cut(s) 135, 228, 278
BsuTUI ATCGAT 1 cut(s) 270
BtsIMutI CAGTG 1 cut(s) 310
CaiI CAGNNNCTG 2 cut(s) 101, 356
CciI TCATGA 1 cut(s) 439
ClaI ATCGAT 1 cut(s) 270
CviAII CATG 3 cut(s) 161, 236, 440
CviJI RGCY 7 cut(s) 56, 101, 135, 155, 228, 278, 286
CviKI_1 RGCY 7 cut(s) 56, 101, 135, 155, 228, 278, 286
DpnI GATC 3 cut(s) 105, 159, 273
DpnII GATC 3 cut(s) 103, 157, 271
DriI GACNNNNNGTC 1 cut(s) 45
EaeI YGGCCR 2 cut(s) 226, 276
Eam1105I GACNNNNNGTC 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 135
Eco57I CTGAAG 1 cut(s) 43
EcoRII CCWGG 1 cut(s) 228
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 195
FaeI CATG 3 cut(s) 164, 239, 443
FaiI YATR 8 cut(s) 6, 36, 116, 162, 237, 241, 399, 441
FatI CATG 3 cut(s) 160, 235, 439
FbaI TGATCA 2 cut(s) 103, 157
FblI GTMKAC 1 cut(s) 24
HaeIII GGCC 3 cut(s) 135, 228, 278
HapII CCGG 2 cut(s) 275, 335
Hin1II CATG 3 cut(s) 164, 239, 443
HinfI GANTC 1 cut(s) 347
HpaII CCGG 2 cut(s) 275, 335
HphI GGTGA 2 cut(s) 185, 324
Hpy166II GTNNAC 3 cut(s) 25, 183, 365
Hpy188I TCNGA 1 cut(s) 352
Hpy188III TCNNGA 2 cut(s) 86, 440
Hpy8I GTNNAC 3 cut(s) 25, 183, 365
HpyAV CCTTC 1 cut(s) 67
HpyCH4III ACNGT 2 cut(s) 97, 314
HpyCH4IV ACGT 1 cut(s) 204
HpyCH4V TGCA 5 cut(s) 4, 183, 255, 297, 383
HpyF10VI GCNNNNNNNGC 1 cut(s) 161
HpySE526I ACGT 1 cut(s) 204
Hsp92II CATG 3 cut(s) 164, 239, 443
Ksp22I TGATCA 2 cut(s) 103, 157
Kzo9I GATC 3 cut(s) 103, 157, 271
LpnPI CCDG 8 cut(s) 156, 210, 215, 242, 288, 291, 348, 438
LweI GCATC 1 cut(s) 343
MaeII ACGT 1 cut(s) 204
MalI GATC 3 cut(s) 105, 159, 273
MboI GATC 3 cut(s) 103, 157, 271
MboII GAAGA 3 cut(s) 232, 350, 425
MhlI GDGCHC 2 cut(s) 185, 312
MlsI TGGCCA 1 cut(s) 228
MluCI AATT 7 cut(s) 7, 81, 195, 250, 384, 405, 429
MluNI TGGCCA 1 cut(s) 228
MlyI GAGTC 1 cut(s) 356
MnlI CCTC 4 cut(s) 125, 383, 435, 447
Mox20I TGGCCA 1 cut(s) 228
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 1 cut(s) 228
MseI TTAA 2 cut(s) 51, 457
MslI CAYNNNNRTG 1 cut(s) 240
Msp20I TGGCCA 1 cut(s) 228
MspI CCGG 2 cut(s) 275, 335
MspR9I CCNGG 1 cut(s) 230
MvaI CCWGG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 161
NdeII GATC 3 cut(s) 103, 157, 271
NlaIII CATG 3 cut(s) 164, 239, 443
NsiI ATGCAT 1 cut(s) 6
PagI TCATGA 1 cut(s) 439
PceI AGGCCT 1 cut(s) 135
PleI GAGTC 1 cut(s) 355
PpsI GAGTC 1 cut(s) 355
Psp6I CCWGG 1 cut(s) 228
PspGI CCWGG 1 cut(s) 228
PstNI CAGNNNCTG 2 cut(s) 101, 356
RseI CAYNNNNRTG 1 cut(s) 240
SaqAI TTAA 2 cut(s) 51, 457
Sau3AI GATC 3 cut(s) 103, 157, 271
SchI GAGTC 1 cut(s) 356
ScrFI CCNGG 1 cut(s) 230
SduI GDGCHC 2 cut(s) 185, 312
SetI ASST 6 cut(s) 103, 150, 157, 207, 234, 288
SfaNI GCATC 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 240
Sse9I AATT 7 cut(s) 7, 81, 195, 250, 384, 405, 429
SseBI AGGCCT 1 cut(s) 135
StuI AGGCCT 1 cut(s) 135
StyD4I CCNGG 1 cut(s) 228
TaaI ACNGT 2 cut(s) 97, 314
TaiI ACGT 1 cut(s) 207
TaqI TCGA 2 cut(s) 270, 318
TasI AATT 7 cut(s) 7, 81, 195, 250, 384, 405, 429
Tru1I TTAA 2 cut(s) 51, 457
Tru9I TTAA 2 cut(s) 51, 457
TscAI CASTG 1 cut(s) 317
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 1 cut(s) 317
VneI GTGCAC 1 cut(s) 181
XapI RAATTY 1 cut(s) 429
XmiI GTMKAC 1 cut(s) 24
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.