Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028650

Physical Location & Seq

Genomic Coordinates Reverse (-)

1469601 .. 1472186

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1020300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGCACTTAAAACCTACTGCTGATGTCTTAATCAACTTTGCTTCGTACAGAAGTGCTGCCGCTTCTTCCATGGCTGCTCTCAAGCAACCAACCATTAGAGTTGTGGCGGTCATTGCTGAAGGTGTACCTGAGTCAGACACTAAGCAATTGATCGCATATGCATGGGCAAACAACAAGGTTGTCATTGGCCCAGCTACTGTTGGAGGAATTCAAGCTGGAGTTTTTAAGATTGGTGACACTGCTGGAACAATTGATAACATTATTCACCGCAAGCTATACTGGCCTGGATTTGTTGGTTTTGTCTCCAAATCTGTATGTAGCTATCCAATATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016020 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Citrate_synt CoA_binding Ligase_CoA

Protein Analysis

112

Amino Acids

11.75

Weight (kDa)

9.42

Isoelectric Point (pI)

28.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028650)

Species	Orthologous Gene IDs
malus_domestica	MD08G1020300.v1.1
pyrus_communis	pycom07g27300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	60, 107, 268
AcsI	RAATTY	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	138
AfaI	GTAC	2 cut(s)	47, 126
AgsI	TTSAA	1 cut(s)	212
AjnI	CCWGG	1 cut(s)	283
AluBI	AGCT	4 cut(s)	194, 215, 274, 321
AluI	AGCT	4 cut(s)	194, 215, 274, 321
Alw26I	GTCTC	1 cut(s)	307
AlwNI	CAGNNNCTG	1 cut(s)	197
AoxI	GGCC	2 cut(s)	187, 281
ApeKI	GCWGC	2 cut(s)	56, 74
ApoI	RAATTY	1 cut(s)	207
AspS9I	GGNCC	1 cut(s)	188
AsuHPI	GGTGA	2 cut(s)	245, 257
BbvI	GCAGC	2 cut(s)	43, 61
BciT130I	CCWGG	1 cut(s)	285
BcoDI	GTCTC	1 cut(s)	307
BisI	GCNGC	3 cut(s)	57, 60, 75
BlsI	GCNGC	3 cut(s)	58, 61, 76
Bme1390I	CCNGG	1 cut(s)	285
BmgT120I	GGNCC	1 cut(s)	188
BmrFI	CCNGG	1 cut(s)	285
BpmI	CTGGAG	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	65
BsaJI	CCNNGG	1 cut(s)	69
Bse1I	ACTGG	1 cut(s)	284
Bse3DI	GCAATG	1 cut(s)	111
BseBI	CCWGG	1 cut(s)	285
BseDI	CCNNGG	1 cut(s)	69
BseMI	GCAATG	1 cut(s)	111
BseMII	CTCAG	1 cut(s)	120
BseNI	ACTGG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	43, 61
BseYI	CCCAGC	1 cut(s)	190
BshFI	GGCC	2 cut(s)	189, 283
BsmAI	GTCTC	1 cut(s)	307
BsnI	GGCC	2 cut(s)	189, 283
Bsp143I	GATC	1 cut(s)	150
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	3 cut(s)	60, 107, 268
BspANI	GGCC	2 cut(s)	189, 283
BspCNI	CTCAG	1 cut(s)	121
BsrDI	GCAATG	1 cut(s)	111
BsrI	ACTGG	1 cut(s)	284
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	1 cut(s)	150
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	285
Bst4CI	ACNGT	1 cut(s)	199
BstC8I	GCNNGC	1 cut(s)	272
BstDEI	CTNAG	2 cut(s)	129, 141
BstDSI	CCRYGG	1 cut(s)	69
BstKTI	GATC	1 cut(s)	153
BstMAI	GTCTC	1 cut(s)	307
BstMBI	GATC	1 cut(s)	150
BstMWI	GCNNNNNNNGC	2 cut(s)	113, 280
BstNI	CCWGG	1 cut(s)	285
BstSCI	CCNGG	1 cut(s)	283
BstV1I	GCAGC	2 cut(s)	43, 61
BsuRI	GGCC	2 cut(s)	189, 283
BtgI	CCRYGG	1 cut(s)	69
BtsI	GCAGTG	1 cut(s)	237
BtsIMutI	CAGTG	1 cut(s)	237
Cac8I	GCNNGC	1 cut(s)	272
CaiI	CAGNNNCTG	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	2 cut(s)	46, 125
CviAII	CATG	2 cut(s)	70, 162
CviJI	RGCY	7 cut(s)	74, 189, 194, 215, 274, 283, 321
CviKI_1	RGCY	7 cut(s)	74, 189, 194, 215, 274, 283, 321
CviQI	GTAC	2 cut(s)	46, 125
DdeI	CTNAG	2 cut(s)	129, 141
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eco130I	CCWWGG	1 cut(s)	69
Eco57I	CTGAAG	1 cut(s)	138
EcoRI	GAATTC	1 cut(s)	207
EcoRII	CCWGG	1 cut(s)	283
EcoT14I	CCWWGG	1 cut(s)	69
EcoT22I	ATGCAT	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	2 cut(s)	73, 165
FaiI	YATR	6 cut(s)	71, 157, 159, 163, 277, 316
FatI	CATG	2 cut(s)	69, 161
FauNDI	CATATG	1 cut(s)	157
Fnu4HI	GCNGC	3 cut(s)	57, 60, 75
Fsp4HI	GCNGC	3 cut(s)	57, 60, 75
GluI	GCNGC	3 cut(s)	57, 60, 75
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	1 cut(s)	237
HaeIII	GGCC	2 cut(s)	189, 283
Hin1II	CATG	2 cut(s)	73, 165
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	2 cut(s)	245, 257
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	333
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	113
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	4, 161
HpyF10VI	GCNNNNNNNGC	2 cut(s)	113, 280
HpyF3I	CTNAG	2 cut(s)	129, 141
Hsp92II	CATG	2 cut(s)	73, 165
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	7 cut(s)	141, 201, 204, 228, 265, 270, 297
Lsp1109I	GCAGC	2 cut(s)	43, 61
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	1 cut(s)	57
MfeI	CAATTG	2 cut(s)	146, 249
MluCI	AATT	3 cut(s)	146, 207, 249
MlyI	GAGTC	1 cut(s)	140
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	1 cut(s)	197
Mph1103I	ATGCAT	1 cut(s)	163
MseI	TTAA	3 cut(s)	8, 29, 225
MslI	CAYNNNNRTG	1 cut(s)	160
MspR9I	CCNGG	1 cut(s)	285
MunI	CAATTG	2 cut(s)	146, 249
MvaI	CCWGG	1 cut(s)	285
MwoI	GCNNNNNNNGC	2 cut(s)	113, 280
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	157
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	2 cut(s)	73, 165
NmuCI	GTSAC	1 cut(s)	233
NsiI	ATGCAT	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	58, 61, 76
PleI	GAGTC	1 cut(s)	139
PpsI	GAGTC	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	283
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	1 cut(s)	283
PspPI	GGNCC	1 cut(s)	188
PstNI	CAGNNNCTG	1 cut(s)	197
RsaI	GTAC	2 cut(s)	47, 126
RsaNI	GTAC	2 cut(s)	46, 125
RseI	CAYNNNNRTG	1 cut(s)	160
SaqAI	TTAA	3 cut(s)	8, 29, 225
SatI	GCNGC	3 cut(s)	57, 60, 75
Sau3AI	GATC	1 cut(s)	150
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	140
ScrFI	CCNGG	1 cut(s)	285
SetI	ASST	8 cut(s)	16, 124, 130, 180, 196, 217, 276, 323
SmiMI	CAYNNNNRTG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	3 cut(s)	146, 207, 249
SsiI	CCGC	3 cut(s)	60, 107, 268
StyD4I	CCNGG	1 cut(s)	283
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	1 cut(s)	199
TasI	AATT	3 cut(s)	146, 207, 249
TauI	GCSGC	1 cut(s)	62
Tru1I	TTAA	3 cut(s)	8, 29, 225
Tru9I	TTAA	3 cut(s)	8, 29, 225
TscAI	CASTG	1 cut(s)	244
TseFI	GTSAC	1 cut(s)	233
TseI	GCWGC	2 cut(s)	56, 74
Tsp45I	GTSAC	1 cut(s)	233
TspRI	CASTG	1 cut(s)	244
XapI	RAATTY	1 cut(s)	207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	100
Zsp2I	ATGCAT	1 cut(s)	163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.