Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0028650

Physical Location & Seq

Genomic Coordinates Forward (+)

27080303 .. 27083789

Gene Structure 3487 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g27300.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 468 bp

ATGCAGGGAGAGGCTGGAATCACTAACCCTGGTTCTGAGGGATTTCAGAAGCTATTTTTCGATCAAGAGGAAATCACCATACCAGTGCACTCAAATGTTGTCGCTTCTTCCATGGCTGCTCTCAAGCAACCAACCATTAAAGTTGTGGCAATCATCGCTGAAGGTGTACCTGAGTCAGACACTAAGCAATTGATCGCATATGCACGGGCAAACAACAAGGTTGTCATTGGCCCAGCTACTGTTGGAGGAATTCAAGCTGGAGCTTTTAAGATTGGTGACACTGCTGGAACAATTGATAACATTATTCACTGCAAGCTATACACGCCTGGATTTGTTGCTTTTGTCTCCAAATCTGTATGTAGTCCTGATTTTGGGTTCGTTGGAGCACTTACACATGATCAGTCTGTCGTACACCAGATTTTCTCATGTTTTAGACCCCATTGGATGGGTATGAATCCAAATTTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003878 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006084 GO:0006085 GO:0006139 GO:0006163 GO:0006164 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009117 GO:0009150 GO:0009152 GO:0009165 GO:0009259 GO:0009260 GO:0009346 GO:0009987 GO:0016020 GO:0016740 GO:0016746 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0032991 GO:0033865 GO:0033866 GO:0033875 GO:0034030 GO:0034032 GO:0034033 GO:0034641 GO:0034654 GO:0035383 GO:0035384 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046390 GO:0046483 GO:0046912 GO:0051186 GO:0051188 GO:0055086 GO:0071616 GO:0071704 GO:0071944 GO:0072521 GO:0072522 GO:0090407 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00020 ko00720 ko01100 ko01110 ko01120 ko01130 map00020 map00720 map01100 map01110 map01120 map01130

Pfam Domains

Protein Families

Citrate_synt CoA_binding Ligase_CoA

Protein Analysis

156

Amino Acids

16.48

Weight (kDa)

6.17

Isoelectric Point (pI)

32.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028650)

Species	Orthologous Gene IDs
malus_domestica	MD08G1020300.v1.1
pyrus_communis	pycom07g27300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	445
AcsI	RAATTY	2 cut(s)	249, 460
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	2 cut(s)	168, 411
AfiI	CCNNNNNNNGG	2 cut(s)	371, 445
AgsI	TTSAA	1 cut(s)	254
AjnI	CCWGG	2 cut(s)	28, 325
AluBI	AGCT	5 cut(s)	52, 236, 257, 263, 316
AluI	AGCT	5 cut(s)	52, 236, 257, 263, 316
Alw21I	GWGCWC	2 cut(s)	90, 388
Alw26I	GTCTC	1 cut(s)	349
Alw44I	GTGCAC	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	229
ApaLI	GTGCAC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	249, 460
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	2 cut(s)	67, 287
BaeGI	GKGCMC	1 cut(s)	90
Bbv12I	GWGCWC	2 cut(s)	90, 388
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	1 cut(s)	439
BciT130I	CCWGG	2 cut(s)	30, 327
BclI	TGATCA	1 cut(s)	397
BcoDI	GTCTC	1 cut(s)	349
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme1390I	CCNGG	2 cut(s)	30, 327
BmgT120I	GGNCC	1 cut(s)	230
BmrFI	CCNGG	2 cut(s)	30, 327
BpmI	CTGGAG	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	28, 111
Bsc4I	CCNNNNNNNGG	2 cut(s)	371, 445
Bse1I	ACTGG	1 cut(s)	83
BseBI	CCWGG	2 cut(s)	30, 327
BseDI	CCNNGG	2 cut(s)	28, 111
BseGI	GGATG	1 cut(s)	450
BseLI	CCNNNNNNNGG	2 cut(s)	371, 445
BseMII	CTCAG	2 cut(s)	27, 162
BseNI	ACTGG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	90
BseXI	GCAGC	1 cut(s)	103
BseYI	CCCAGC	1 cut(s)	232
BshFI	GGCC	1 cut(s)	231
BsiHKAI	GWGCWC	2 cut(s)	90, 388
BslI	CCNNNNNNNGG	2 cut(s)	371, 445
BsmAI	GTCTC	1 cut(s)	349
BsnI	GGCC	1 cut(s)	231
Bsp1286I	GDGCHC	2 cut(s)	90, 388
Bsp143I	GATC	3 cut(s)	61, 192, 397
Bsp19I	CCATGG	1 cut(s)	111
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	2 cut(s)	28, 163
BsrI	ACTGG	1 cut(s)	83
BssECI	CCNNGG	2 cut(s)	28, 111
BssMI	GATC	3 cut(s)	61, 192, 397
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	2 cut(s)	30, 327
Bst4CI	ACNGT	1 cut(s)	241
BstC8I	GCNNGC	1 cut(s)	314
BstDEI	CTNAG	3 cut(s)	36, 171, 183
BstDSI	CCRYGG	1 cut(s)	111
BstF5I	GGATG	1 cut(s)	450
BstKTI	GATC	3 cut(s)	64, 195, 400
BstMAI	GTCTC	1 cut(s)	349
BstMBI	GATC	3 cut(s)	61, 192, 397
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 322
BstNI	CCWGG	2 cut(s)	30, 327
BstSCI	CCNGG	2 cut(s)	28, 325
BstSLI	GKGCMC	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	103
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	111
BtgZI	GCGATG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	450
BtsI	GCAGTG	2 cut(s)	279, 307
BtsIMutI	CAGTG	3 cut(s)	90, 279, 307
Cac8I	GCNNGC	1 cut(s)	314
CaiI	CAGNNNCTG	1 cut(s)	239
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	167, 410
CviAII	CATG	3 cut(s)	112, 395, 426
CviJI	RGCY	8 cut(s)	14, 52, 116, 231, 236, 257, 263, 316
CviKI_1	RGCY	8 cut(s)	14, 52, 116, 231, 236, 257, 263, 316
CviQI	GTAC	2 cut(s)	167, 410
DdeI	CTNAG	3 cut(s)	36, 171, 183
DpnI	GATC	3 cut(s)	63, 194, 399
DpnII	GATC	3 cut(s)	61, 192, 397
Eco130I	CCWWGG	1 cut(s)	111
Eco57I	CTGAAG	1 cut(s)	180
EcoRI	GAATTC	1 cut(s)	249
EcoRII	CCWGG	2 cut(s)	28, 325
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	3 cut(s)	115, 398, 429
FatI	CATG	3 cut(s)	111, 394, 425
FauNDI	CATATG	1 cut(s)	199
FbaI	TGATCA	1 cut(s)	397
Fnu4HI	GCNGC	1 cut(s)	117
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	1 cut(s)	117
GluI	GCNGC	1 cut(s)	117
GsaI	CCCAGC	1 cut(s)	236
GsuI	CTGGAG	1 cut(s)	279
HaeIII	GGCC	1 cut(s)	231
Hin1II	CATG	3 cut(s)	115, 398, 429
HinfI	GANTC	3 cut(s)	18, 173, 454
HphI	GGTGA	2 cut(s)	67, 287
Hpy166II	GTNNAC	3 cut(s)	88, 167, 412
Hpy188I	TCNGA	3 cut(s)	37, 48, 178
Hpy188III	TCNNGA	2 cut(s)	65, 365
Hpy8I	GTNNAC	3 cut(s)	88, 167, 412
HpyAV	CCTTC	1 cut(s)	155
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4V	TGCA	4 cut(s)	4, 88, 203, 312
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 322
HpyF3I	CTNAG	3 cut(s)	36, 171, 183
Hsp92II	CATG	3 cut(s)	115, 398, 429
Ksp22I	TGATCA	1 cut(s)	397
Kzo9I	GATC	3 cut(s)	61, 192, 397
LmnI	GCTCC	2 cut(s)	260, 383
Lsp1109I	GCAGC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	275
MalI	GATC	3 cut(s)	63, 194, 399
MboI	GATC	3 cut(s)	61, 192, 397
MboII	GAAGA	1 cut(s)	99
MfeI	CAATTG	2 cut(s)	188, 291
MhlI	GDGCHC	2 cut(s)	90, 388
MluCI	AATT	4 cut(s)	188, 249, 291, 460
MlyI	GAGTC	1 cut(s)	182
MmeI	TCCRAC	2 cut(s)	223, 361
MnlI	CCTC	4 cut(s)	4, 31, 61, 239
MseI	TTAA	2 cut(s)	138, 267
MslI	CAYNNNNRTG	2 cut(s)	83, 93
MspR9I	CCNGG	2 cut(s)	30, 327
MunI	CAATTG	2 cut(s)	188, 291
MvaI	CCWGG	2 cut(s)	30, 327
MwoI	GCNNNNNNNGC	2 cut(s)	155, 322
NcoI	CCATGG	1 cut(s)	111
NdeI	CATATG	1 cut(s)	199
NdeII	GATC	3 cut(s)	61, 192, 397
NlaIII	CATG	3 cut(s)	115, 398, 429
NmuCI	GTSAC	1 cut(s)	275
PfeI	GAWTC	2 cut(s)	18, 454
PflMI	CCANNNNNTGG	1 cut(s)	445
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	28, 325
PspFI	CCCAGC	1 cut(s)	232
PspGI	CCWGG	2 cut(s)	28, 325
PspPI	GGNCC	1 cut(s)	230
PstNI	CAGNNNCTG	1 cut(s)	239
RsaI	GTAC	2 cut(s)	168, 411
RsaNI	GTAC	2 cut(s)	167, 410
RseI	CAYNNNNRTG	2 cut(s)	83, 93
SaqAI	TTAA	2 cut(s)	138, 267
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	3 cut(s)	61, 192, 397
Sau96I	GGNCC	1 cut(s)	230
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	2 cut(s)	30, 327
SduI	GDGCHC	2 cut(s)	90, 388
SetI	ASST	8 cut(s)	54, 166, 172, 222, 238, 259, 265, 318
SmiMI	CAYNNNNRTG	2 cut(s)	83, 93
SmlI	CTYRAG	1 cut(s)	122
SmoI	CTYRAG	1 cut(s)	122
Sse9I	AATT	4 cut(s)	188, 249, 291, 460
StyD4I	CCNGG	2 cut(s)	28, 325
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	241
TaqI	TCGA	1 cut(s)	60
TasI	AATT	4 cut(s)	188, 249, 291, 460
TfiI	GAWTC	2 cut(s)	18, 454
Tru1I	TTAA	2 cut(s)	138, 267
Tru9I	TTAA	2 cut(s)	138, 267
TscAI	CASTG	3 cut(s)	90, 286, 314
TseFI	GTSAC	1 cut(s)	275
TseI	GCWGC	1 cut(s)	116
Tsp45I	GTSAC	1 cut(s)	275
TspDTI	ATGAA	1 cut(s)	467
TspRI	CASTG	3 cut(s)	90, 286, 314
Van91I	CCANNNNNTGG	1 cut(s)	445
VneI	GTGCAC	1 cut(s)	86
XapI	RAATTY	2 cut(s)	249, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.