Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012584

Physical Location & Seq

Genomic Coordinates Reverse (-)

1676287 .. 1677366

Gene Structure 1080 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1022900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGCCGAACCAGAGACCTCCCAGTAAGCCGTCGCAGGGGAAACATGAGAAGGAGAAGCTGAGGAGGAAGAGCTTGCTGAAAAGGGATTTTGGTGTGGCCGTTGTTCTCCCCGTGGGCGGCCATGGAGGTGATGTTCAATGCGAAACGCGGTGGCAATGTGGCTGCAATGGGGGTCTTGACATCCCAGTAGCACAATGGACTTTCTGCTCCGGCTCTGCGTATTCCGTGCCTCCCGGTACTGTAGTGAAGCATAAACGAGGAACGTTGTTGGCTGTGAAGCGTAAACGAGGAACGTTGTTGGCTGATCTAGCATGGCCAGGGGACGAAATTCTTGTGGCGAGGGGTGGACAAGGAGGGGCGAGACACCATGCTTCTTATAGATTGAGAAATTTTGGCAATTGGGAAGATAGCCTCAATCTTCGTATCATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GTP1_OBG MMR_HSR1

Protein Analysis

144

Amino Acids

15.67

Weight (kDa)

10.16

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012584)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g38870 FvH4_2g38870 FvH4_2g38870 FvH4_2g38870
malus_domestica	MD08G1022900.v1.1 MD15G1020600.v1.1
prunus_persica	Prupe.1G372200_v2.0.a1
pyrus_communis	pycom15g01690
rosa_chinensis	RchiOBHm_Chr6g0301971
rosa_laevigata	RLG00000011208
rosa_multiflora	Rmu_sc0006892.1_g000002 Rmu_sc0019189.1_g000003
rosa_roxburghii	Rroxscaffold_7G00166230
rosa_rugosa	Rorug06G0310700 Rorug06G0310700
rosa_samantha	Rh6BG429900 Rh6CG436300 Rh6DG423300
rosa_wichuraiana	Rw6G036660

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	148
AciI	CCGC	2 cut(s)	117, 148
AclI	AACGTT	2 cut(s)	263, 293
AcoI	YGGCCR	3 cut(s)	96, 118, 314
AcsI	RAATTY	2 cut(s)	327, 388
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	2 cut(s)	35, 116
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	1 cut(s)	316
AloI	GAACNNNNNNTCC	2 cut(s)	117, 149
AluBI	AGCT	2 cut(s)	58, 72
AluI	AGCT	2 cut(s)	58, 72
Alw26I	GTCTC	2 cut(s)	7, 355
AoxI	GGCC	3 cut(s)	96, 118, 314
ApeKI	GCWGC	1 cut(s)	162
ApoI	RAATTY	2 cut(s)	327, 388
AsuC2I	CCSGG	1 cut(s)	234
AsuHPI	GGTGA	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	228, 261
BalI	TGGCCA	1 cut(s)	316
BbvCI	CCTCAGC	1 cut(s)	59
BbvI	GCAGC	1 cut(s)	149
BceAI	ACGGC	2 cut(s)	13, 83
BciT130I	CCWGG	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	234
BcoDI	GTCTC	2 cut(s)	7, 355
BfaI	CTAG	1 cut(s)	308
BfmI	CTRYAG	1 cut(s)	240
BisI	GCNGC	2 cut(s)	118, 163
BlsI	GCNGC	2 cut(s)	119, 164
Bme1390I	CCNGG	2 cut(s)	234, 318
BmrFI	CCNGG	2 cut(s)	234, 318
BmrI	ACTGGG	2 cut(s)	15, 179
BmuI	ACTGGG	2 cut(s)	15, 179
Bpu10I	CCTNAGC	1 cut(s)	59
BpuMI	CCSGG	1 cut(s)	234
BsaI	GGTCTC	1 cut(s)	7
BsaJI	CCNNGG	3 cut(s)	111, 121, 317
BsaXI	ACNNNNNCTCC	2 cut(s)	117, 147
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 116
Bse1I	ACTGG	2 cut(s)	21, 185
Bse3DI	GCAATG	2 cut(s)	161, 172
BseBI	CCWGG	1 cut(s)	318
BseDI	CCNNGG	3 cut(s)	111, 121, 317
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	35, 116
BseMI	GCAATG	2 cut(s)	161, 172
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	2 cut(s)	21, 185
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	149
Bsh1236I	CGCG	1 cut(s)	148
BshFI	GGCC	3 cut(s)	98, 120, 316
BsiSI	CCGG	2 cut(s)	210, 234
BslFI	GGGAC	1 cut(s)	335
BslI	CCNNNNNNNGG	2 cut(s)	35, 116
BsmAI	GTCTC	2 cut(s)	7, 355
BsmFI	GGGAC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	98, 120, 316
Bso31I	GGTCTC	1 cut(s)	7
Bsp143I	GATC	1 cut(s)	304
Bsp19I	CCATGG	1 cut(s)	121
BspACI	CCGC	2 cut(s)	117, 148
BspANI	GGCC	3 cut(s)	98, 120, 316
BspCNI	CTCAG	1 cut(s)	51
BspFNI	CGCG	1 cut(s)	148
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	7
BsrDI	GCAATG	2 cut(s)	161, 172
BsrI	ACTGG	2 cut(s)	21, 185
BssECI	CCNNGG	3 cut(s)	111, 121, 317
BssMI	GATC	1 cut(s)	304
BssT1I	CCWWGG	1 cut(s)	121
Bst2UI	CCWGG	1 cut(s)	318
Bst4CI	ACNGT	1 cut(s)	241
Bst6I	CTCTTC	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	74
BstDEI	CTNAG	1 cut(s)	59
BstDSI	CCRYGG	2 cut(s)	111, 121
BstF5I	GGATG	1 cut(s)	180
BstFNI	CGCG	1 cut(s)	148
BstKTI	GATC	1 cut(s)	307
BstMAI	GTCTC	2 cut(s)	7, 355
BstMBI	GATC	1 cut(s)	304
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	1 cut(s)	318
BstSCI	CCNGG	2 cut(s)	232, 316
BstSFI	CTRYAG	1 cut(s)	240
BstUI	CGCG	1 cut(s)	148
BstV1I	GCAGC	1 cut(s)	149
BsuRI	GGCC	3 cut(s)	98, 120, 316
BtgI	CCRYGG	2 cut(s)	111, 121
BtsCI	GGATG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	237
CviAII	CATG	4 cut(s)	44, 122, 312, 368
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	59
DpnI	GATC	1 cut(s)	306
DpnII	GATC	1 cut(s)	304
EaeI	YGGCCR	3 cut(s)	96, 118, 314
Eam1104I	CTCTTC	1 cut(s)	62
EarI	CTCTTC	1 cut(s)	62
Eco130I	CCWWGG	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	7
EcoRII	CCWGG	1 cut(s)	316
EcoT14I	CCWWGG	1 cut(s)	121
ErhI	CCWWGG	1 cut(s)	121
FaeI	CATG	4 cut(s)	47, 125, 315, 371
FaiI	YATR	8 cut(s)	45, 123, 252, 313, 369, 378, 428, 430
FaqI	GGGAC	1 cut(s)	335
FatI	CATG	4 cut(s)	43, 121, 311, 367
Fnu4HI	GCNGC	2 cut(s)	118, 163
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	2 cut(s)	118, 163
FspBI	CTAG	1 cut(s)	308
GluI	GCNGC	2 cut(s)	118, 163
HaeIII	GGCC	3 cut(s)	98, 120, 316
HapII	CCGG	2 cut(s)	210, 234
Hin1II	CATG	4 cut(s)	47, 125, 315, 371
HpaII	CCGG	2 cut(s)	210, 234
HphI	GGTGA	1 cut(s)	140
Hpy166II	GTNNAC	2 cut(s)	284, 347
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	284, 347
Hpy99I	CGWCG	1 cut(s)	34
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	241
HpyCH4IV	ACGT	2 cut(s)	263, 293
HpyCH4V	TGCA	1 cut(s)	165
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	1 cut(s)	59
HpySE526I	ACGT	2 cut(s)	263, 293
Hsp92II	CATG	4 cut(s)	47, 125, 315, 371
Kzo9I	GATC	1 cut(s)	304
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	8 cut(s)	20, 23, 34, 198, 223, 247, 303, 330
Lsp1109I	GCAGC	1 cut(s)	149
MaeI	CTAG	1 cut(s)	308
MaeII	ACGT	2 cut(s)	263, 293
MalI	GATC	1 cut(s)	306
MboI	GATC	1 cut(s)	304
MboII	GAAGA	3 cut(s)	79, 410, 416
MfeI	CAATTG	1 cut(s)	397
MlsI	TGGCCA	1 cut(s)	316
MluCI	AATT	3 cut(s)	327, 388, 397
MluNI	TGGCCA	1 cut(s)	316
Mox20I	TGGCCA	1 cut(s)	316
MscI	TGGCCA	1 cut(s)	316
MslI	CAYNNNNRTG	1 cut(s)	126
Msp20I	TGGCCA	1 cut(s)	316
MspI	CCGG	2 cut(s)	210, 234
MspR9I	CCNGG	2 cut(s)	234, 318
MunI	CAATTG	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	318
MvnI	CGCG	1 cut(s)	148
MwoI	GCNNNNNNNGC	1 cut(s)	308
NciI	CCSGG	1 cut(s)	234
NcoI	CCATGG	1 cut(s)	121
NdeII	GATC	1 cut(s)	304
NlaIII	CATG	4 cut(s)	47, 125, 315, 371
PciSI	GCTCTTC	1 cut(s)	62
PkrI	GCNGC	2 cut(s)	119, 164
Psp1406I	AACGTT	2 cut(s)	263, 293
Psp6I	CCWGG	1 cut(s)	316
PspGI	CCWGG	1 cut(s)	316
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
RseI	CAYNNNNRTG	1 cut(s)	126
SapI	GCTCTTC	1 cut(s)	62
SatI	GCNGC	2 cut(s)	118, 163
Sau3AI	GATC	1 cut(s)	304
ScrFI	CCNGG	2 cut(s)	234, 318
SetI	ASST	6 cut(s)	19, 60, 74, 130, 266, 296
SfcI	CTRYAG	1 cut(s)	240
SmiMI	CAYNNNNRTG	1 cut(s)	126
Sse9I	AATT	3 cut(s)	327, 388, 397
SsiI	CCGC	2 cut(s)	117, 148
SspMI	CTAG	1 cut(s)	308
StyD4I	CCNGG	2 cut(s)	232, 316
StyI	CCWWGG	1 cut(s)	121
TaaI	ACNGT	1 cut(s)	241
TaiI	ACGT	2 cut(s)	266, 296
TasI	AATT	3 cut(s)	327, 388, 397
TauI	GCSGC	1 cut(s)	120
TseI	GCWGC	1 cut(s)	162
TspGWI	ACGGA	1 cut(s)	214
XapI	RAATTY	2 cut(s)	327, 388
XcmI	CCANNNNNNNNNTGG	1 cut(s)	192
XspI	CTAG	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.