MD08G1047900.v1.1
MYB Family

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0028649
Physical Location & Seq
Reverse (-)
3657411 .. 3658943
1533 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1047900.v1.1.491

Sequence Viewer

Length: 258 bp
ATGATTAATCCCCTATTTGTTGCAGGAAATGATGACCCCCTCCAAGGAGAAATAGCATGGAATAGGACGCCACGAGAGCTTGGTATTTCAGCTTATGCTCTTCAACAACTTGGTGGTTCACATGCTGCTACACCAAAACAAATTAGAGAATTAATGAAGGTTGATGGGCTTACTAATGATGAAGTCAAAAGCCATTTGCAGAAATTGGAAGCCATTTTGCATGCTATTAGTGGTGAATCTTTTTACACATACATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000156 GO:0000160 GO:0001101 GO:0001763 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009267 GO:0009414 GO:0009415 GO:0009605 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009737 GO:0009755 GO:0009787 GO:0009788 GO:0009888 GO:0009889 GO:0009890 GO:0009892 GO:0009933 GO:0009966 GO:0009968 GO:0009987 GO:0009991 GO:0010014 GO:0010015 GO:0010016 GO:0010033 GO:0010035 GO:0010073 GO:0010074 GO:0010075 GO:0010082 GO:0010223 GO:0010346 GO:0010380 GO:0010468 GO:0010492 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016036 GO:0019219 GO:0019222 GO:0019827 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031537 GO:0031667 GO:0031668 GO:0031669 GO:0032101 GO:0032104 GO:0032107 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0035556 GO:0040008 GO:0042221 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0045892 GO:0045934 GO:0048364 GO:0048367 GO:0048507 GO:0048509 GO:0048519 GO:0048523 GO:0048532 GO:0048580 GO:0048583 GO:0048585 GO:0048638 GO:0048646 GO:0048731 GO:0048856 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051172 GO:0051193 GO:0051239 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060089 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0071496 GO:0072505 GO:0072506 GO:0080022 GO:0080036 GO:0080050 GO:0080090 GO:0080113 GO:0090056 GO:0090506 GO:0090548 GO:0097159 GO:0097305 GO:0098727 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901401 GO:1901419 GO:1901420 GO:1901463 GO:1901698 GO:1901699 GO:1901700 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:1905393 GO:1905957 GO:1905958 GO:2000026 GO:2000112 GO:2000113 GO:2000241 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

86

Amino Acids

9.41

Weight (kDa)

5.45

Isoelectric Point (pI)

36.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028649)

Species Orthologous Gene IDs
malus_domestica MD08G1047900.v1.1 MD11G1104500.v1.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 68
AfiI CCNNNNNNNGG 1 cut(s) 44
AflIII ACRYGT 1 cut(s) 252
AgsI TTSAA 1 cut(s) 104
AluBI AGCT 2 cut(s) 79, 92
AluI AGCT 2 cut(s) 79, 92
ApeKI GCWGC 1 cut(s) 125
AseI ATTAAT 2 cut(s) 6, 152
AsuHPI GGTGA 1 cut(s) 245
BauI CACGAG 1 cut(s) 72
BbvI GCAGC 1 cut(s) 112
BccI CCATC 1 cut(s) 158
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 68
BsaJI CCNNGG 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseDI CCNNGG 1 cut(s) 43
BseLI CCNNNNNNNGG 1 cut(s) 44
BseXI GCAGC 1 cut(s) 112
BslI CCNNNNNNNGG 1 cut(s) 44
BspQI GCTCTTC 1 cut(s) 105
BssECI CCNNGG 1 cut(s) 43
BssNI GRCGYC 1 cut(s) 68
BssSI CACGAG 1 cut(s) 72
BssT1I CCWWGG 1 cut(s) 43
Bst2BI CACGAG 1 cut(s) 72
Bst6I CTCTTC 1 cut(s) 105
BstACI GRCGYC 1 cut(s) 68
BstC8I GCNNGC 1 cut(s) 222
BstMWI GCNNNNNNNGC 1 cut(s) 76
BstNSI RCATGY 3 cut(s) 125, 224, 256
BstV1I GCAGC 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 222
CseI GACGC 1 cut(s) 76
CviAII CATG 4 cut(s) 57, 122, 221, 253
CviJI RGCY 5 cut(s) 79, 92, 169, 192, 212
CviKI_1 RGCY 5 cut(s) 79, 92, 169, 192, 212
Eam1104I CTCTTC 1 cut(s) 105
EarI CTCTTC 1 cut(s) 105
Eco130I CCWWGG 1 cut(s) 43
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 4 cut(s) 60, 125, 224, 256
FaiI YATR 6 cut(s) 58, 96, 123, 222, 250, 254
FatI CATG 4 cut(s) 56, 121, 220, 252
Fnu4HI GCNGC 1 cut(s) 126
Fsp4HI GCNGC 1 cut(s) 126
GluI GCNGC 1 cut(s) 126
HgaI GACGC 1 cut(s) 76
Hin1I GRCGYC 1 cut(s) 68
Hin1II CATG 4 cut(s) 60, 125, 224, 256
HinfI GANTC 1 cut(s) 236
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 1 cut(s) 119
Hpy8I GTNNAC 1 cut(s) 119
HpyAV CCTTC 1 cut(s) 151
HpyCH4V TGCA 3 cut(s) 23, 199, 220
HpyF10VI GCNNNNNNNGC 1 cut(s) 76
Hsp92I GRCGYC 1 cut(s) 68
Hsp92II CATG 4 cut(s) 60, 125, 224, 256
LguI GCTCTTC 1 cut(s) 105
LpnPI CCDG 1 cut(s) 9
Lsp1109I GCAGC 1 cut(s) 112
MboII GAAGA 1 cut(s) 92
MluCI AATT 3 cut(s) 141, 149, 203
MnlI CCTC 1 cut(s) 50
MseI TTAA 2 cut(s) 6, 152
MslI CAYNNNNRTG 2 cut(s) 251, 253
MwoI GCNNNNNNNGC 1 cut(s) 76
NlaIII CATG 4 cut(s) 60, 125, 224, 256
NspI RCATGY 3 cut(s) 125, 224, 256
PaeI GCATGC 1 cut(s) 224
PciI ACATGT 1 cut(s) 252
PciSI GCTCTTC 1 cut(s) 105
PfeI GAWTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 127
PscI ACATGT 1 cut(s) 252
PshBI ATTAAT 2 cut(s) 6, 152
RseI CAYNNNNRTG 2 cut(s) 251, 253
SapI GCTCTTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 6, 152
SatI GCNGC 1 cut(s) 126
SetI ASST 3 cut(s) 81, 94, 162
SgeI CNNG 9 cut(s) 36, 56, 69, 84, 86, 92, 122, 134, 233
SmiMI CAYNNNNRTG 2 cut(s) 251, 253
SphI GCATGC 1 cut(s) 224
Sse9I AATT 3 cut(s) 141, 149, 203
StyI CCWWGG 1 cut(s) 43
TasI AATT 3 cut(s) 141, 149, 203
TfiI GAWTC 1 cut(s) 236
Tru1I TTAA 2 cut(s) 6, 152
Tru9I TTAA 2 cut(s) 6, 152
TseI GCWGC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 170, 195
VspI ATTAAT 2 cut(s) 6, 152
XceI RCATGY 3 cut(s) 125, 224, 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.