Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0028649

Physical Location & Seq

Genomic Coordinates Forward (+)

8889109 .. 8889621

Gene Structure 513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1104500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGAAGATTTCAAAAACGTTTTTCTGGAAATGTTGCACAGGGAGATTTGTGTTGGCCACTCTTTGCTTTGTGTTGGCCAATCCTTACAAGTTCAGGGCTGCTACACCAAAACAAATTAGAGAGTTAATGAAGGTTGATGGGTTTACTAACGATGAAGTCAAAAGCCATTTGCAGGTTTGTATATGTGATTATCCATTTGTTTTGAACCATAATTTGGTTGATGTGAATAAAATTTTACACATACATGACAGAAATTGGAAGTCATTTTGCATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0009653 GO:0009719 GO:0009723 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009873 GO:0009888 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010015 GO:0010033 GO:0010073 GO:0010075 GO:0010082 GO:0010087 GO:0010088 GO:0010089 GO:0010119 GO:0010150 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0022622 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032870 GO:0035556 GO:0040008 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048364 GO:0048366 GO:0048367 GO:0048507 GO:0048509 GO:0048518 GO:0048522 GO:0048580 GO:0048638 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051239 GO:0051252 GO:0051254 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071369 GO:0071495 GO:0080050 GO:0080090 GO:0080113 GO:0090693 GO:0099402 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:1905392 GO:2000026 GO:2000112 GO:2000241 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

92

Amino Acids

10.73

Weight (kDa)

9.17

Isoelectric Point (pI)

32.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028649)

Species	Orthologous Gene IDs
malus_domestica	MD08G1047900.v1.1 MD11G1104500.v1.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	163
AccB7I	CCANNNNNTGG	1 cut(s)	214
AclI	AACGTT	1 cut(s)	17
AcoI	YGGCCR	2 cut(s)	54, 75
AcsI	RAATTY	1 cut(s)	231
AfiI	CCNNNNNNNGG	2 cut(s)	172, 214
AgsI	TTSAA	2 cut(s)	12, 205
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AoxI	GGCC	2 cut(s)	54, 75
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	231
BalI	TGGCCA	2 cut(s)	56, 77
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	131
BfuAI	ACCTGC	1 cut(s)	163
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bsc4I	CCNNNNNNNGG	2 cut(s)	172, 214
BseLI	CCNNNNNNNGG	2 cut(s)	172, 214
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	2 cut(s)	56, 77
BslI	CCNNNNNNNGG	2 cut(s)	172, 214
BsnI	GGCC	2 cut(s)	56, 77
BspANI	GGCC	2 cut(s)	56, 77
BspMI	ACCTGC	1 cut(s)	163
BstNSI	RCATGY	1 cut(s)	274
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	2 cut(s)	56, 77
BveI	ACCTGC	1 cut(s)	163
CviAII	CATG	2 cut(s)	245, 271
CviJI	RGCY	4 cut(s)	56, 77, 98, 165
CviKI_1	RGCY	4 cut(s)	56, 77, 98, 165
EaeI	YGGCCR	2 cut(s)	54, 75
FaeI	CATG	2 cut(s)	248, 274
FaiI	YATR	6 cut(s)	182, 184, 210, 242, 246, 272
FatI	CATG	2 cut(s)	244, 270
Fnu4HI	GCNGC	1 cut(s)	99
Fsp4HI	GCNGC	1 cut(s)	99
GluI	GCNGC	1 cut(s)	99
HaeIII	GGCC	2 cut(s)	56, 77
Hin1II	CATG	2 cut(s)	248, 274
Hpy166II	GTNNAC	1 cut(s)	144
Hpy188III	TCNNGA	1 cut(s)	25
Hpy8I	GTNNAC	1 cut(s)	144
HpyAV	CCTTC	1 cut(s)	124
HpyCH4IV	ACGT	1 cut(s)	17
HpyCH4V	TGCA	3 cut(s)	36, 172, 270
HpySE526I	ACGT	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	248, 274
LpnPI	CCDG	4 cut(s)	10, 24, 79, 158
Lsp1109I	GCAGC	1 cut(s)	85
MaeII	ACGT	1 cut(s)	17
MboII	GAAGA	1 cut(s)	16
MlsI	TGGCCA	2 cut(s)	56, 77
MluCI	AATT	4 cut(s)	114, 211, 231, 253
MluNI	TGGCCA	2 cut(s)	56, 77
Mox20I	TGGCCA	2 cut(s)	56, 77
MscI	TGGCCA	2 cut(s)	56, 77
MseI	TTAA	1 cut(s)	125
MslI	CAYNNNNRTG	1 cut(s)	243
Msp20I	TGGCCA	2 cut(s)	56, 77
NlaIII	CATG	2 cut(s)	248, 274
NspI	RCATGY	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	1 cut(s)	100
Psp1406I	AACGTT	1 cut(s)	17
RseI	CAYNNNNRTG	1 cut(s)	243
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	1 cut(s)	99
SetI	ASST	3 cut(s)	20, 135, 177
SgeI	CNNG	6 cut(s)	37, 51, 100, 106, 185, 257
SmiMI	CAYNNNNRTG	1 cut(s)	243
Sse9I	AATT	4 cut(s)	114, 211, 231, 253
TaiI	ACGT	1 cut(s)	20
TasI	AATT	4 cut(s)	114, 211, 231, 253
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	3 cut(s)	17, 143, 168
Van91I	CCANNNNNTGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.