Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028665

Physical Location & Seq

Genomic Coordinates Forward (+)

5131324 .. 5132296

Gene Structure 973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1064400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 246 bp

ATGCTGCGGCAACCAAGGTTTACAGGACTAGAAGAGACCTTGCAGATTGTGCTGCTTCGGTGGCAGACTTTGGATTTTGCAGCTCTGAAACGAAGCTCGGTGTCCTTCTACAACATTGAGAAACATGACAGTGCCGATCGCAGTGGTCACGGGCTAGGACAAGGGCTGCCAATAGGGAAGGGTTTGCTTAAGGATGAGAAGGCTCAGAAACTAGCTCTGCAGCACTGGCTTGAAATCCAAATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0008150 GO:0010119 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0065007

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

82

Amino Acids

9.24

Weight (kDa)

9.22

Isoelectric Point (pI)

66.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028665)

Species	Orthologous Gene IDs
malus_domestica	MD08G1064400.v1.1
rosa_chinensis	RchiOBHm_Chr3g0459451

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	7
AcsI	RAATTY	1 cut(s)	240
AflII	CTTAAG	1 cut(s)	188
AgsI	TTSAA	1 cut(s)	233
AluBI	AGCT	3 cut(s)	83, 96, 215
AluI	AGCT	3 cut(s)	83, 96, 215
Alw26I	GTCTC	1 cut(s)	29
ApeKI	GCWGC	5 cut(s)	4, 52, 80, 166, 220
ApoI	RAATTY	1 cut(s)	240
BbvI	GCAGC	4 cut(s)	39, 92, 153, 232
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	3 cut(s)	29, 155, 212
BfmI	CTRYAG	1 cut(s)	218
BfrI	CTTAAG	1 cut(s)	188
BisI	GCNGC	6 cut(s)	5, 8, 53, 81, 167, 221
BlsI	GCNGC	6 cut(s)	6, 9, 54, 82, 168, 222
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	14
BseGI	GGATG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	218
BseNI	ACTGG	1 cut(s)	230
BseXI	GCAGC	4 cut(s)	39, 92, 153, 232
Bsh1285I	CGRYCG	1 cut(s)	139
BsiEI	CGRYCG	1 cut(s)	139
BsmAI	GTCTC	1 cut(s)	29
Bso31I	GGTCTC	1 cut(s)	29
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	7
BspCNI	CTCAG	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	222
BspTI	CTTAAG	1 cut(s)	188
BspTNI	GGTCTC	1 cut(s)	29
BsrI	ACTGG	1 cut(s)	230
BssECI	CCNNGG	1 cut(s)	14
BssMI	GATC	1 cut(s)	136
BssT1I	CCWWGG	1 cut(s)	14
Bst4CI	ACNGT	1 cut(s)	131
Bst6I	CTCTTC	1 cut(s)	27
BstAFI	CTTAAG	1 cut(s)	188
BstAPI	GCANNNNNTGC	1 cut(s)	49
BstDEI	CTNAG	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	139
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	136
BstMCI	CGRYCG	1 cut(s)	139
BstMWI	GCNNNNNNNGC	3 cut(s)	49, 61, 226
BstSFI	CTRYAG	1 cut(s)	218
BstV1I	GCAGC	4 cut(s)	39, 92, 153, 232
BtsCI	GGATG	1 cut(s)	199
BtsI	GCAGTG	1 cut(s)	148
BtsIMutI	CAGTG	3 cut(s)	136, 148, 223
CviAII	CATG	1 cut(s)	125
CviJI	RGCY	7 cut(s)	83, 96, 154, 166, 203, 215, 229
CviKI_1	RGCY	7 cut(s)	83, 96, 154, 166, 203, 215, 229
DdeI	CTNAG	1 cut(s)	204
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	27
EarI	CTCTTC	1 cut(s)	27
Eco130I	CCWWGG	1 cut(s)	14
Eco31I	GGTCTC	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	1 cut(s)	128
FaiI	YATR	1 cut(s)	126
FatI	CATG	1 cut(s)	124
Fnu4HI	GCNGC	6 cut(s)	5, 8, 53, 81, 167, 221
FokI	GGATG	1 cut(s)	206
Fsp4HI	GCNGC	6 cut(s)	5, 8, 53, 81, 167, 221
FspBI	CTAG	3 cut(s)	29, 155, 212
GluI	GCNGC	6 cut(s)	5, 8, 53, 81, 167, 221
Hin1II	CATG	1 cut(s)	128
Hpy166II	GTNNAC	1 cut(s)	21
Hpy188I	TCNGA	2 cut(s)	87, 207
Hpy8I	GTNNAC	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	115, 172, 193
HpyCH4III	ACNGT	1 cut(s)	131
HpyCH4V	TGCA	3 cut(s)	43, 80, 220
HpyF10VI	GCNNNNNNNGC	3 cut(s)	49, 61, 226
HpyF3I	CTNAG	1 cut(s)	204
Hsp92II	CATG	1 cut(s)	128
Kzo9I	GATC	1 cut(s)	136
LpnPI	CCDG	2 cut(s)	9, 211
Lsp1109I	GCAGC	4 cut(s)	39, 92, 153, 232
MaeI	CTAG	3 cut(s)	29, 155, 212
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	1 cut(s)	44
MluCI	AATT	1 cut(s)	240
MseI	TTAA	2 cut(s)	189, 244
MslI	CAYNNNNRTG	1 cut(s)	129
MspCI	CTTAAG	1 cut(s)	188
MwoI	GCNNNNNNNGC	3 cut(s)	49, 61, 226
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	146
PkrI	GCNGC	6 cut(s)	6, 9, 54, 82, 168, 222
Ple19I	CGATCG	1 cut(s)	139
PstI	CTGCAG	1 cut(s)	222
PvuI	CGATCG	1 cut(s)	139
RseI	CAYNNNNRTG	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	189, 244
SatI	GCNGC	6 cut(s)	5, 8, 53, 81, 167, 221
Sau3AI	GATC	1 cut(s)	136
SetI	ASST	5 cut(s)	20, 41, 85, 98, 217
SfcI	CTRYAG	1 cut(s)	218
SmiMI	CAYNNNNRTG	1 cut(s)	129
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	240
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	3 cut(s)	29, 155, 212
StyI	CCWWGG	1 cut(s)	14
TaaI	ACNGT	1 cut(s)	131
TasI	AATT	1 cut(s)	240
TauI	GCSGC	1 cut(s)	10
Tru1I	TTAA	2 cut(s)	189, 244
Tru9I	TTAA	2 cut(s)	189, 244
TscAI	CASTG	3 cut(s)	136, 148, 230
TseFI	GTSAC	1 cut(s)	146
TseI	GCWGC	5 cut(s)	4, 52, 80, 166, 220
Tsp45I	GTSAC	1 cut(s)	146
TspRI	CASTG	3 cut(s)	136, 148, 230
Vha464I	CTTAAG	1 cut(s)	188
XapI	RAATTY	1 cut(s)	240
XspI	CTAG	3 cut(s)	29, 155, 212

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.