RchiOBHm_Chr3g0459451

Short calmodulin-binding motif containing conserved Ile and Gln residues.

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
7877498 .. 7878022
525 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42604

Sequence Viewer

Length: 309 bp
ATGGTGGCCTTAACAATGCTCTGTCTGAACCAGCAATCTTGCTTTTGCCTAGACTGGTTAGAGAGCTTGATGCTGCAGCAGTCAAAATTCAAAAGGTTTACAACGAGTTCGATAACTCGAAGAAACCTTGCAGATTGTGCAGTGGCGGCTGAGGAGCTATGGTGGAGAGATACGTTAGATTCTCCAGCGGGTGCTAAAGAGCTATGGTGGAAAACTTTAGATTCTGCAGCTCTCAAGCAGAGTTCTGTGTCATTCTTCAATGTTGAGAAGTCAGAAACCGCCGTTTCGCGGTGGGCAAGGGCTAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

102

Amino Acids

11.64

Weight (kDa)

7.64

Isoelectric Point (pI)

75.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028665)

Species Orthologous Gene IDs
malus_domestica MD08G1064400.v1.1
rosa_chinensis RchiOBHm_Chr3g0459451

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 289
AciI CCGC 4 cut(s) 146, 188, 279, 289
AcsI RAATTY 1 cut(s) 86
AfiI CCNNNNNNNGG 1 cut(s) 288
AgsI TTSAA 2 cut(s) 91, 259
AluBI AGCT 5 cut(s) 66, 157, 202, 230, 306
AluI AGCT 5 cut(s) 66, 157, 202, 230, 306
AoxI GGCC 1 cut(s) 6
ApeKI GCWGC 3 cut(s) 73, 76, 227
ApoI RAATTY 1 cut(s) 86
AsuNHI GCTAGC 1 cut(s) 302
BbvCI CCTCAGC 1 cut(s) 150
BbvI GCAGC 3 cut(s) 60, 88, 239
BceAI ACGGC 1 cut(s) 266
BfaI CTAG 3 cut(s) 50, 303, 307
BfmI CTRYAG 2 cut(s) 74, 225
BisI GCNGC 4 cut(s) 74, 77, 147, 228
BlsI GCNGC 4 cut(s) 75, 78, 148, 229
BmsI GCATC 1 cut(s) 60
BmtI GCTAGC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 150
BpuEI CTTGAG 1 cut(s) 218
BsaXI ACNNNNNCTCC 2 cut(s) 146, 176
Bsc4I CCNNNNNNNGG 1 cut(s) 288
Bse1I ACTGG 1 cut(s) 59
BseLI CCNNNNNNNGG 1 cut(s) 288
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 1 cut(s) 59
BseRI GAGGAG 1 cut(s) 167
BseXI GCAGC 3 cut(s) 60, 88, 239
BsgI GTGCAG 1 cut(s) 159
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 288
BsnI GGCC 1 cut(s) 8
BspACI CCGC 4 cut(s) 146, 188, 279, 289
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 1 cut(s) 142
BspFNI CGCG 1 cut(s) 289
BspMAI CTGCAG 2 cut(s) 78, 229
BspOI GCTAGC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 137
BstC8I GCNNGC 1 cut(s) 304
BstDEI CTNAG 1 cut(s) 150
BstFNI CGCG 1 cut(s) 289
BstMWI GCNNNNNNNGC 2 cut(s) 137, 146
BstSFI CTRYAG 2 cut(s) 74, 225
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 3 cut(s) 60, 88, 239
BsuRI GGCC 1 cut(s) 8
BtsI GCAGTG 1 cut(s) 147
BtsIMutI CAGTG 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 304
CviJI RGCY 8 cut(s) 8, 66, 149, 157, 202, 230, 302, 306
CviKI_1 RGCY 8 cut(s) 8, 66, 149, 157, 202, 230, 302, 306
DdeI CTNAG 1 cut(s) 150
FaiI YATR 2 cut(s) 160, 205
FauI CCCGC 1 cut(s) 181
Fnu4HI GCNGC 4 cut(s) 74, 77, 147, 228
Fsp4HI GCNGC 4 cut(s) 74, 77, 147, 228
FspBI CTAG 3 cut(s) 50, 303, 307
GluI GCNGC 4 cut(s) 74, 77, 147, 228
GsuI CTGGAG 1 cut(s) 168
HaeIII GGCC 1 cut(s) 8
HinfI GANTC 2 cut(s) 179, 221
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 2 cut(s) 27, 274
Hpy8I GTNNAC 1 cut(s) 99
HpyCH4IV ACGT 1 cut(s) 173
HpyCH4V TGCA 4 cut(s) 76, 131, 140, 227
HpyF10VI GCNNNNNNNGC 2 cut(s) 137, 146
HpyF3I CTNAG 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 173
LmnI GCTCC 1 cut(s) 154
LpnPI CCDG 3 cut(s) 40, 44, 198
Lsp1109I GCAGC 3 cut(s) 60, 88, 239
LweI GCATC 1 cut(s) 60
MaeI CTAG 3 cut(s) 50, 303, 307
MaeII ACGT 1 cut(s) 173
MboII GAAGA 2 cut(s) 132, 247
MluCI AATT 1 cut(s) 86
MnlI CCTC 1 cut(s) 145
MseI TTAA 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 188
MvnI CGCG 1 cut(s) 289
MwoI GCNNNNNNNGC 2 cut(s) 137, 146
NheI GCTAGC 1 cut(s) 302
PfeI GAWTC 2 cut(s) 179, 221
PkrI GCNGC 4 cut(s) 75, 78, 148, 229
PstI CTGCAG 2 cut(s) 78, 229
SaqAI TTAA 1 cut(s) 11
SatI GCNGC 4 cut(s) 74, 77, 147, 228
SetI ASST 8 cut(s) 68, 98, 129, 159, 176, 204, 232, 308
SfaNI GCATC 1 cut(s) 60
SfcI CTRYAG 2 cut(s) 74, 225
SmlI CTYRAG 1 cut(s) 233
SmoI CTYRAG 1 cut(s) 233
Sse9I AATT 1 cut(s) 86
SsiI CCGC 4 cut(s) 146, 188, 279, 289
SspMI CTAG 3 cut(s) 50, 303, 307
TaiI ACGT 1 cut(s) 176
TaqI TCGA 2 cut(s) 110, 118
TasI AATT 1 cut(s) 86
TauI GCSGC 1 cut(s) 149
TfiI GAWTC 2 cut(s) 179, 221
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 147
TseI GCWGC 3 cut(s) 73, 76, 227
TspRI CASTG 1 cut(s) 147
XapI RAATTY 1 cut(s) 86
XspI CTAG 3 cut(s) 50, 303, 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.