Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0024400

Physical Location & Seq

Genomic Coordinates Reverse (-)

8216353 .. 8216900

Gene Structure 548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1097800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCAGAAATTCAGAGAATACATGACTTACAAGAAGGATTACAACAGTGCGGTCCTTCATTTACTCCGTCAGCTCGTGAGGGATGCAATCCGCTTTGAAGAAATTGTTTCCGGATCAGCCGCAGGGCTCACCCACATTGATGTAAAAGTGGCAGATTTGCAGAGGATGGCGCAGGAGTATGAGATTCTTGATCTGCGACCCTTCTTTACAAGCGCTAGTTTCTCAGGAGCCAACTTTGAGTTGGATGAAGAGCGTGGATTTATAAGGCATCACCTTGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM2_N MCM_N MCM_OB

Protein Analysis

95

Amino Acids

11.01

Weight (kDa)

6.41

Isoelectric Point (pI)

43.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WHD_MCM2	PF23669	12 - 88	1.1e-23	DNA replication licensing factor MCM2-like, winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024400)

Species	Orthologous Gene IDs
malus_domestica	MD08G1097800.v1.1
pyrus_communis	pycom13g11690 pycom16g11420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	263
AccIII	TCCGGA	1 cut(s)	110
AciI	CCGC	3 cut(s)	50, 91, 120
AclWI	GGATC	1 cut(s)	121
AcsI	RAATTY	1 cut(s)	8
AfeI	AGCGCT	1 cut(s)	214
AgsI	TTSAA	1 cut(s)	98
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
AlwI	GGATC	1 cut(s)	121
Aor13HI	TCCGGA	1 cut(s)	110
Aor51HI	AGCGCT	1 cut(s)	214
ApoI	RAATTY	1 cut(s)	8
AspLEI	GCGC	2 cut(s)	172, 215
AspS9I	GGNCC	1 cut(s)	52
AsuHPI	GGTGA	2 cut(s)	121, 263
AvaII	GGWCC	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	129
BauI	CACGAG	1 cut(s)	74
BccI	CCATC	1 cut(s)	160
BfaI	CTAG	1 cut(s)	216
BfoI	RGCGCY	1 cut(s)	216
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	52
BmiI	GGNNCC	1 cut(s)	229
BmsI	GCATC	2 cut(s)	73, 277
BsaWI	WCCGGW	1 cut(s)	110
BseAI	TCCGGA	1 cut(s)	110
BseGI	GGATG	3 cut(s)	88, 171, 250
BseMII	CTCAG	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	111
Bsp1286I	GDGCHC	1 cut(s)	129
Bsp13I	TCCGGA	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	113, 190
BspACI	CCGC	3 cut(s)	50, 91, 120
BspCNI	CTCAG	1 cut(s)	236
BspEI	TCCGGA	1 cut(s)	110
BspLI	GGNNCC	1 cut(s)	229
BspPI	GGATC	1 cut(s)	121
BspQI	GCTCTTC	1 cut(s)	243
BssMI	GATC	2 cut(s)	113, 190
BssSI	CACGAG	1 cut(s)	74
Bst2BI	CACGAG	1 cut(s)	74
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	223
BstF5I	GGATG	3 cut(s)	88, 171, 250
BstH2I	RGCGCY	1 cut(s)	216
BstHHI	GCGC	2 cut(s)	172, 215
BstKTI	GATC	2 cut(s)	116, 193
BstMBI	GATC	2 cut(s)	113, 190
BtsCI	GGATG	3 cut(s)	88, 171, 250
BtsIMutI	CAGTG	1 cut(s)	52
CfoI	GCGC	2 cut(s)	172, 215
Cfr13I	GGNCC	1 cut(s)	52
CviAII	CATG	1 cut(s)	22
CviJI	RGCY	4 cut(s)	73, 119, 127, 230
CviKI_1	RGCY	4 cut(s)	73, 119, 127, 230
DdeI	CTNAG	1 cut(s)	223
DpnI	GATC	2 cut(s)	115, 192
DpnII	GATC	2 cut(s)	113, 190
Eam1104I	CTCTTC	1 cut(s)	243
EarI	CTCTTC	1 cut(s)	243
Eco24I	GRGCYC	1 cut(s)	129
Eco47I	GGWCC	1 cut(s)	52
Eco47III	AGCGCT	1 cut(s)	214
EcoT38I	GRGCYC	1 cut(s)	129
FaeI	CATG	1 cut(s)	25
FaiI	YATR	3 cut(s)	23, 180, 263
FatI	CATG	1 cut(s)	21
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	3 cut(s)	95, 178, 257
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	216
GlaI	GCGC	2 cut(s)	171, 214
GluI	GCNGC	1 cut(s)	120
HaeII	RGCGCY	1 cut(s)	216
HapII	CCGG	1 cut(s)	111
HhaI	GCGC	2 cut(s)	172, 215
Hin1II	CATG	1 cut(s)	25
Hin6I	GCGC	2 cut(s)	170, 213
HinP1I	GCGC	2 cut(s)	170, 213
HinfI	GANTC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	111
HphI	GGTGA	2 cut(s)	121, 263
Hpy188I	TCNGA	1 cut(s)	14
Hpy188III	TCNNGA	4 cut(s)	76, 111, 188, 225
HpyAV	CCTTC	3 cut(s)	28, 65, 211
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	4 cut(s)	4, 86, 160, 278
HpyF3I	CTNAG	1 cut(s)	223
Hsp92II	CATG	1 cut(s)	25
HspAI	GCGC	2 cut(s)	170, 213
Kpn2I	TCCGGA	1 cut(s)	110
Kzo9I	GATC	2 cut(s)	113, 190
LguI	GCTCTTC	1 cut(s)	243
LmnI	GCTCC	1 cut(s)	227
LpnPI	CCDG	4 cut(s)	108, 124, 158, 210
LweI	GCATC	2 cut(s)	73, 277
MaeI	CTAG	1 cut(s)	216
MalI	GATC	2 cut(s)	115, 192
MboI	GATC	2 cut(s)	113, 190
MboII	GAAGA	2 cut(s)	110, 260
MhlI	GDGCHC	1 cut(s)	129
MluCI	AATT	2 cut(s)	8, 102
MmeI	TCCRAC	1 cut(s)	222
MnlI	CCTC	2 cut(s)	72, 156
MroI	TCCGGA	1 cut(s)	110
MslI	CAYNNNNRTG	1 cut(s)	138
MspI	CCGG	1 cut(s)	111
NdeII	GATC	2 cut(s)	113, 190
NlaIII	CATG	1 cut(s)	25
NlaIV	GGNNCC	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	243
PfeI	GAWTC	1 cut(s)	184
PkrI	GCNGC	1 cut(s)	121
PsiI	TTATAA	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	52
RseI	CAYNNNNRTG	1 cut(s)	138
SapI	GCTCTTC	1 cut(s)	243
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	2 cut(s)	113, 190
Sau96I	GGNCC	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	129
SetI	ASST	2 cut(s)	75, 276
SfaNI	GCATC	2 cut(s)	73, 277
SinI	GGWCC	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	8, 102
SsiI	CCGC	3 cut(s)	50, 91, 120
SspMI	CTAG	1 cut(s)	216
TaaI	ACNGT	1 cut(s)	47
TasI	AATT	2 cut(s)	8, 102
TauI	GCSGC	1 cut(s)	122
TfiI	GAWTC	1 cut(s)	184
TscAI	CASTG	1 cut(s)	52
TspDTI	ATGAA	2 cut(s)	47, 261
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	1 cut(s)	52
VpaK11BI	GGWCC	1 cut(s)	52
XapI	RAATTY	1 cut(s)	8
XcmI	CCANNNNNNNNNTGG	1 cut(s)	238
XspI	CTAG	1 cut(s)	216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.