Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0024400

Physical Location & Seq

Genomic Coordinates Forward (+)

8059508 .. 8061088

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g11690.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGCAGGATGTGGTTGACCCAGTCACTGATGAAATGCTTGCAAAGTTTGTCGTTGACAGTCACTTCAAGTCACAAGCCAAGGGAGCTAACATGGATGATATGCCTATAAGCGAATCCCACGAAGATAGTGAAGCCTCTGCCAACCCAGTAGATCCAGAGATAATTCCTCAAGATATGCTGAAGAAATACGTAACATATGCCAAGTTAAATGTATTCCCAAGGTTGCACGATGCTGATTTGGAAAAGATCACTCGTGTTTATGCTGATATGCGGAGAGAATCTTCACATGGACAAGGAGTACCCATAGCTGTAAGGCATATTGAATCAATGATCAGAATGTCTGAAGCACATGCAAGAATGCACCTTAGACAGCATGTAATACAAGAAGACGTGGACATGGCGATTCGTGTATTACTTGATTCATTCATCTCAACACAAAAATTTGGGGTGCAGAAAGCTCTGCAAAAGAAATTCAGAGAATACATGACTTATAAGAAGGATTACAACAGTGCGGTCCTTCATTTACTCCGTCAGCTCGTGAGGGATGCAATCCGCTTTGAAGAAATTGTTTCCGGATCAGCCGCAGGGCTCACCCACATTGATGTAAAAGTGGCAGATTTGCAGAGGATGGCGCAGGAGTATGAGATTCTTGATCTGCGACCCTTCTTTACAAGCGCTAGTTTCTCAGGAGCCAACTTTGAGTTGGATGGAGAGCGTGGATTGATAAGGCATCACCTTGCAAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006268 GO:0006275 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009987 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0030174 GO:0031323 GO:0031326 GO:0032392 GO:0032508 GO:0032991 GO:0034641 GO:0034645 GO:0042555 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0046483 GO:0050789 GO:0050794 GO:0051052 GO:0051171 GO:0051276 GO:0060255 GO:0065007 GO:0071103 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090329 GO:1901360 GO:1901576 GO:2000112

KEGG Pathways

Metabolic & Signaling

ko03030 ko04110 ko04111 ko04113 map03030 map04110 map04111 map04113

Pfam Domains

Protein Families

MCM MCM2_N MCM_N MCM_OB

Protein Analysis

249

Amino Acids

28.4

Weight (kDa)

6.05

Isoelectric Point (pI)

47.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024400)

Species	Orthologous Gene IDs
malus_domestica	MD08G1097800.v1.1
pyrus_communis	pycom13g11690 pycom16g11420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccIII	TCCGGA	1 cut(s)	572
AciI	CCGC	4 cut(s)	271, 512, 553, 582
AclWI	GGATC	2 cut(s)	146, 583
AcsI	RAATTY	2 cut(s)	440, 470
AcuI	CTGAAG	2 cut(s)	200, 363
AfaI	GTAC	1 cut(s)	300
AfeI	AGCGCT	1 cut(s)	676
AgsI	TTSAA	3 cut(s)	67, 323, 560
AjiI	CACGTC	1 cut(s)	391
AluBI	AGCT	4 cut(s)	86, 308, 458, 535
AluI	AGCT	4 cut(s)	86, 308, 458, 535
AlwI	GGATC	2 cut(s)	146, 583
AlwNI	CAGNNNCTG	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	572
Aor51HI	AGCGCT	1 cut(s)	676
ApoI	RAATTY	2 cut(s)	440, 470
AspLEI	GCGC	2 cut(s)	634, 677
AspS9I	GGNCC	1 cut(s)	514
AsuHPI	GGTGA	2 cut(s)	583, 725
AvaII	GGWCC	1 cut(s)	514
BanII	GRGCYC	1 cut(s)	591
BauI	CACGAG	2 cut(s)	252, 536
BbsI	GAAGAC	1 cut(s)	393
BccI	CCATC	2 cut(s)	622, 701
BclI	TGATCA	1 cut(s)	330
BfaI	CTAG	1 cut(s)	678
BfoI	RGCGCY	1 cut(s)	678
BisI	GCNGC	1 cut(s)	582
BlsI	GCNGC	1 cut(s)	583
Bme18I	GGWCC	1 cut(s)	514
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	514
BmiI	GGNNCC	1 cut(s)	691
BmrI	ACTGGG	2 cut(s)	14, 140
BmsI	GCATC	3 cut(s)	220, 535, 739
BmuI	ACTGGG	2 cut(s)	14, 140
BpiI	GAAGAC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	153
BsaAI	YACGTR	1 cut(s)	190
BsaJI	CCNNGG	2 cut(s)	78, 218
BsaWI	WCCGGW	1 cut(s)	572
Bse1I	ACTGG	2 cut(s)	20, 146
BseAI	TCCGGA	1 cut(s)	572
BseDI	CCNNGG	2 cut(s)	78, 218
BseGI	GGATG	5 cut(s)	13, 100, 550, 633, 712
BseMII	CTCAG	1 cut(s)	699
BseNI	ACTGG	2 cut(s)	20, 146
BsgI	GTGCAG	1 cut(s)	470
BsiSI	CCGG	1 cut(s)	573
BsmI	GAATGC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	591
Bsp13I	TCCGGA	1 cut(s)	572
Bsp143I	GATC	5 cut(s)	151, 246, 330, 575, 652
BspACI	CCGC	4 cut(s)	271, 512, 553, 582
BspCNI	CTCAG	1 cut(s)	698
BspEI	TCCGGA	1 cut(s)	572
BspLI	GGNNCC	1 cut(s)	691
BspPI	GGATC	2 cut(s)	146, 583
BsrI	ACTGG	2 cut(s)	20, 146
BssECI	CCNNGG	2 cut(s)	78, 218
BssMI	GATC	5 cut(s)	151, 246, 330, 575, 652
BssSI	CACGAG	2 cut(s)	252, 536
BssT1I	CCWWGG	2 cut(s)	78, 218
Bst2BI	CACGAG	2 cut(s)	252, 536
Bst4CI	ACNGT	2 cut(s)	59, 509
BstBAI	YACGTR	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	39
BstDEI	CTNAG	2 cut(s)	365, 685
BstF5I	GGATG	5 cut(s)	13, 100, 550, 633, 712
BstH2I	RGCGCY	1 cut(s)	678
BstHHI	GCGC	2 cut(s)	634, 677
BstKTI	GATC	5 cut(s)	154, 249, 333, 578, 655
BstMBI	GATC	5 cut(s)	151, 246, 330, 575, 652
BstMWI	GCNNNNNNNGC	1 cut(s)	83
BstNSI	RCATGY	2 cut(s)	353, 377
BstSNI	TACGTA	1 cut(s)	190
BstV2I	GAAGAC	1 cut(s)	393
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	5 cut(s)	13, 100, 550, 633, 712
BtsIMutI	CAGTG	2 cut(s)	24, 514
Cac8I	GCNNGC	1 cut(s)	39
CaiI	CAGNNNCTG	1 cut(s)	26
CfoI	GCGC	2 cut(s)	634, 677
Cfr13I	GGNCC	1 cut(s)	514
Csp6I	GTAC	1 cut(s)	299
CviAII	CATG	6 cut(s)	91, 287, 350, 374, 397, 484
CviJI	RGCY	9 cut(s)	77, 86, 134, 308, 458, 535, 581, 589, 692
CviKI_1	RGCY	9 cut(s)	77, 86, 134, 308, 458, 535, 581, 589, 692
CviQI	GTAC	1 cut(s)	299
DdeI	CTNAG	2 cut(s)	365, 685
DpnI	GATC	5 cut(s)	153, 248, 332, 577, 654
DpnII	GATC	5 cut(s)	151, 246, 330, 575, 652
Eco105I	TACGTA	1 cut(s)	190
Eco130I	CCWWGG	2 cut(s)	78, 218
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	514
Eco47III	AGCGCT	1 cut(s)	676
Eco57I	CTGAAG	2 cut(s)	200, 363
EcoT14I	CCWWGG	2 cut(s)	78, 218
EcoT38I	GRGCYC	1 cut(s)	591
ErhI	CCWWGG	2 cut(s)	78, 218
FaeI	CATG	6 cut(s)	94, 290, 353, 377, 400, 487
FatI	CATG	6 cut(s)	90, 286, 349, 373, 396, 483
FauNDI	CATATG	1 cut(s)	196
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	1 cut(s)	582
FokI	GGATG	5 cut(s)	20, 107, 557, 640, 719
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	1 cut(s)	582
FspBI	CTAG	1 cut(s)	678
GlaI	GCGC	2 cut(s)	633, 676
GluI	GCNGC	1 cut(s)	582
HaeII	RGCGCY	1 cut(s)	678
HapII	CCGG	1 cut(s)	573
HhaI	GCGC	2 cut(s)	634, 677
Hin1II	CATG	6 cut(s)	94, 290, 353, 377, 400, 487
Hin6I	GCGC	2 cut(s)	632, 675
HinP1I	GCGC	2 cut(s)	632, 675
HincII	GTYRAC	2 cut(s)	16, 55
HindII	GTYRAC	2 cut(s)	16, 55
HinfI	GANTC	6 cut(s)	113, 278, 323, 403, 419, 646
HpaII	CCGG	1 cut(s)	573
HphI	GGTGA	2 cut(s)	583, 725
Hpy166II	GTNNAC	3 cut(s)	16, 55, 394
Hpy188I	TCNGA	3 cut(s)	335, 343, 476
Hpy188III	TCNNGA	6 cut(s)	155, 170, 538, 573, 650, 687
Hpy8I	GTNNAC	3 cut(s)	16, 55, 394
HpyAV	CCTTC	3 cut(s)	490, 527, 673
HpyCH4III	ACNGT	2 cut(s)	59, 509
HpyCH4IV	ACGT	2 cut(s)	189, 390
HpyF10VI	GCNNNNNNNGC	1 cut(s)	83
HpyF3I	CTNAG	2 cut(s)	365, 685
HpySE526I	ACGT	2 cut(s)	189, 390
Hsp92II	CATG	6 cut(s)	94, 290, 353, 377, 400, 487
HspAI	GCGC	2 cut(s)	632, 675
Kpn2I	TCCGGA	1 cut(s)	572
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	5 cut(s)	151, 246, 330, 575, 652
LmnI	GCTCC	2 cut(s)	83, 689
LpnPI	CCDG	7 cut(s)	33, 159, 168, 570, 586, 620, 672
LweI	GCATC	3 cut(s)	220, 535, 739
MaeI	CTAG	1 cut(s)	678
MaeII	ACGT	2 cut(s)	189, 390
MaeIII	GTNAC	4 cut(s)	22, 59, 69, 190
MalI	GATC	5 cut(s)	153, 248, 332, 577, 654
MboI	GATC	5 cut(s)	151, 246, 330, 575, 652
MboII	GAAGA	5 cut(s)	134, 193, 273, 398, 572
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	591
MluCI	AATT	4 cut(s)	162, 440, 470, 564
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	4 cut(s)	145, 177, 534, 618
MroI	TCCGGA	1 cut(s)	572
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	1 cut(s)	600
MspI	CCGG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	363
MwoI	GCNNNNNNNGC	1 cut(s)	83
NdeI	CATATG	1 cut(s)	196
NdeII	GATC	5 cut(s)	151, 246, 330, 575, 652
NlaIII	CATG	6 cut(s)	94, 290, 353, 377, 400, 487
NlaIV	GGNNCC	1 cut(s)	691
NmuCI	GTSAC	3 cut(s)	22, 59, 69
NspI	RCATGY	2 cut(s)	353, 377
PctI	GAATGC	1 cut(s)	363
PfeI	GAWTC	6 cut(s)	113, 278, 323, 403, 419, 646
PflFI	GACNNNGTC	1 cut(s)	20
PkrI	GCNGC	1 cut(s)	583
Ppu21I	YACGTR	1 cut(s)	190
PsiI	TTATAA	1 cut(s)	492
PspN4I	GGNNCC	1 cut(s)	691
PspPI	GGNCC	1 cut(s)	514
PstNI	CAGNNNCTG	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	151
PsyI	GACNNNGTC	1 cut(s)	20
RsaI	GTAC	1 cut(s)	300
RsaNI	GTAC	1 cut(s)	299
RseI	CAYNNNNRTG	1 cut(s)	600
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	1 cut(s)	582
Sau3AI	GATC	5 cut(s)	151, 246, 330, 575, 652
Sau96I	GGNCC	1 cut(s)	514
SduI	GDGCHC	1 cut(s)	591
SetI	ASST	9 cut(s)	88, 192, 224, 310, 366, 393, 460, 537, 738
SfaNI	GCATC	3 cut(s)	220, 535, 739
SinI	GGWCC	1 cut(s)	514
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	1 cut(s)	168
SmoI	CTYRAG	1 cut(s)	168
SnaBI	TACGTA	1 cut(s)	190
Sse9I	AATT	4 cut(s)	162, 440, 470, 564
SsiI	CCGC	4 cut(s)	271, 512, 553, 582
SspMI	CTAG	1 cut(s)	678
StyI	CCWWGG	2 cut(s)	78, 218
TaaI	ACNGT	2 cut(s)	59, 509
TaiI	ACGT	2 cut(s)	192, 393
TasI	AATT	4 cut(s)	162, 440, 470, 564
TauI	GCSGC	1 cut(s)	584
TfiI	GAWTC	6 cut(s)	113, 278, 323, 403, 419, 646
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	2 cut(s)	31, 514
TseFI	GTSAC	3 cut(s)	22, 59, 69
Tsp45I	GTSAC	3 cut(s)	22, 59, 69
TspDTI	ATGAA	4 cut(s)	45, 411, 415, 509
TspGWI	ACGGA	1 cut(s)	518
TspRI	CASTG	2 cut(s)	31, 514
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	514
XapI	RAATTY	2 cut(s)	440, 470
XceI	RCATGY	2 cut(s)	353, 377
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XspI	CTAG	1 cut(s)	678

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.