MD08G1101900.v1.1

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0028662
Physical Location & Seq
Forward (+)
8552990 .. 8554014
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1101900.v1.1.491

Sequence Viewer

Length: 417 bp
ATGTCCGTTATCCTTTGTAATAAGAACATACTGAAGCCCTCATTTGGTGTCTGGCATGGCAAACCAACAACAGCTCGAGGTTTTTCCCGACACGTAGCTCAAGCACAAGTGCGCCCTACATGGCTCCCTGGGCTTAACCCACCAGCCTACCTTGACCGAAGCTTGGCCGGGGATTTCGGGTTTGACCCACTCGGGCTCGGGGAGGACGGAAATCTTTTGGGTTGTATGTGCAGGCAGAGCTGGTTCATGCTCGCCTTGCAATGCTTGGAGTTGCAGGAATTCTTCTTACAGATATATCCCAGAGGTCTGTTGCTAAATCCTCTTGGTCTGGCAAAAGAGATCAAGAATGCTCATGAGTGGAAGCTAAAGAGATTAAGAACGGTACAAATTGTTCAGACTCTTGCAAATTCTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00196 map00196
Pfam Domains
Protein Families
Chloroa_b-bind

Protein Analysis

139

Amino Acids

15.47

Weight (kDa)

9.46

Isoelectric Point (pI)

47.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0028662)

Species Orthologous Gene IDs
malus_domestica MD08G1101900.v1.1
pyrus_communis pycom08g08250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 2 cut(s) 278, 406
AcuI CTGAAG 1 cut(s) 53
AfaI GTAC 1 cut(s) 384
AfiI CCNNNNNNNGG 2 cut(s) 44, 163
AflIII ACRYGT 1 cut(s) 91
AjnI CCWGG 1 cut(s) 127
AluBI AGCT 5 cut(s) 74, 98, 162, 240, 364
AluI AGCT 5 cut(s) 74, 98, 162, 240, 364
Ama87I CYCGRG 3 cut(s) 75, 191, 197
AoxI GGCC 1 cut(s) 165
ApoI RAATTY 2 cut(s) 278, 406
AspLEI GCGC 1 cut(s) 114
AsuC2I CCSGG 1 cut(s) 169
AvaI CYCGRG 3 cut(s) 75, 191, 197
BanII GRGCYC 1 cut(s) 198
BciT130I CCWGG 1 cut(s) 129
BcnI CCSGG 1 cut(s) 169
Bme1390I CCNGG 2 cut(s) 129, 169
BmeT110I CYCGRG 3 cut(s) 75, 191, 197
BmiI GGNNCC 1 cut(s) 125
BmrFI CCNGG 2 cut(s) 129, 169
BpuEI CTTGAG 1 cut(s) 84
BpuMI CCSGG 1 cut(s) 169
BsaAI YACGTR 1 cut(s) 94
BsaJI CCNNGG 3 cut(s) 127, 128, 168
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 163
Bse3DI GCAATG 1 cut(s) 266
BseBI CCWGG 1 cut(s) 129
BseDI CCNNGG 3 cut(s) 127, 128, 168
BseLI CCNNNNNNNGG 2 cut(s) 44, 163
BseMI GCAATG 1 cut(s) 266
BsgI GTGCAG 1 cut(s) 250
BshFI GGCC 1 cut(s) 167
BsiHKCI CYCGRG 3 cut(s) 75, 191, 197
BsiSI CCGG 1 cut(s) 168
BslI CCNNNNNNNGG 2 cut(s) 44, 163
BsmI GAATGC 1 cut(s) 352
BsnI GGCC 1 cut(s) 167
BsoBI CYCGRG 3 cut(s) 75, 191, 197
Bsp1286I GDGCHC 1 cut(s) 198
Bsp143I GATC 1 cut(s) 339
BspANI GGCC 1 cut(s) 167
BspHI TCATGA 1 cut(s) 352
BspLI GGNNCC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 127, 128, 168
BssMI GATC 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 382
BstAPI GCANNNNNTGC 1 cut(s) 410
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 233, 252
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 1 cut(s) 342
BstMBI GATC 1 cut(s) 339
BstMWI GCNNNNNNNGC 4 cut(s) 130, 237, 256, 410
BstNI CCWGG 1 cut(s) 129
BstSCI CCNGG 2 cut(s) 127, 167
BsuRI GGCC 1 cut(s) 167
Cac8I GCNNGC 2 cut(s) 233, 252
CciI TCATGA 1 cut(s) 352
CfoI GCGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 383
CviAII CATG 4 cut(s) 56, 120, 247, 353
CviQI GTAC 1 cut(s) 383
DpnI GATC 1 cut(s) 341
DpnII GATC 1 cut(s) 339
EaeI YGGCCR 1 cut(s) 165
Eco24I GRGCYC 1 cut(s) 198
Eco57I CTGAAG 1 cut(s) 53
Eco88I CYCGRG 3 cut(s) 75, 191, 197
EcoRI GAATTC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 127
EcoT38I GRGCYC 1 cut(s) 198
FaeI CATG 4 cut(s) 59, 123, 250, 356
FaiI YATR 7 cut(s) 29, 57, 121, 227, 248, 295, 354
FatI CATG 4 cut(s) 55, 119, 246, 352
FriOI GRGCYC 1 cut(s) 198
GlaI GCGC 1 cut(s) 113
HaeIII GGCC 1 cut(s) 167
HapII CCGG 1 cut(s) 168
HhaI GCGC 1 cut(s) 114
Hin1II CATG 4 cut(s) 59, 123, 250, 356
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HindIII AAGCTT 1 cut(s) 160
HinfI GANTC 1 cut(s) 397
HpaII CCGG 1 cut(s) 168
Hpy188I TCNGA 1 cut(s) 396
Hpy188III TCNNGA 3 cut(s) 87, 343, 353
HpyCH4III ACNGT 1 cut(s) 382
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 4 cut(s) 231, 259, 274, 404
HpyF10VI GCNNNNNNNGC 4 cut(s) 130, 237, 256, 410
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 4 cut(s) 59, 123, 250, 356
HspAI GCGC 1 cut(s) 112
Kzo9I GATC 1 cut(s) 339
LmnI GCTCC 1 cut(s) 129
MaeII ACGT 1 cut(s) 93
MalI GATC 1 cut(s) 341
MboI GATC 1 cut(s) 339
MboII GAAGA 1 cut(s) 274
MhlI GDGCHC 1 cut(s) 198
MluCI AATT 3 cut(s) 278, 387, 406
MlyI GAGTC 1 cut(s) 391
MnlI CCTC 5 cut(s) 49, 71, 196, 296, 330
MseI TTAA 3 cut(s) 135, 374, 415
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 129, 169
Mva1269I GAATGC 1 cut(s) 352
MvaI CCWGG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 130, 237, 256, 410
NciI CCSGG 1 cut(s) 169
NdeII GATC 1 cut(s) 339
NlaIII CATG 4 cut(s) 59, 123, 250, 356
NlaIV GGNNCC 1 cut(s) 125
PaeR7I CTCGAG 1 cut(s) 75
PagI TCATGA 1 cut(s) 352
PasI CCCWGGG 1 cut(s) 128
PctI GAATGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 391
PpsI GAGTC 1 cut(s) 391
Ppu21I YACGTR 1 cut(s) 94
Psp6I CCWGG 1 cut(s) 127
PspGI CCWGG 1 cut(s) 127
PspN4I GGNNCC 1 cut(s) 125
PspXI VCTCGAGB 1 cut(s) 75
PsrI GAACNNNNNNTAC 2 cut(s) 375, 407
RsaI GTAC 1 cut(s) 384
RsaNI GTAC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 135, 374, 415
Sau3AI GATC 1 cut(s) 339
SchI GAGTC 1 cut(s) 391
ScrFI CCNGG 2 cut(s) 129, 169
SduI GDGCHC 1 cut(s) 198
SetI ASST 9 cut(s) 76, 82, 96, 100, 153, 164, 242, 307, 366
Sfr274I CTCGAG 1 cut(s) 75
SlaI CTCGAG 1 cut(s) 75
SmlI CTYRAG 2 cut(s) 75, 99
SmoI CTYRAG 2 cut(s) 75, 99
Sse9I AATT 3 cut(s) 278, 387, 406
StyD4I CCNGG 2 cut(s) 127, 167
TaaI ACNGT 1 cut(s) 382
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 76
TaqII GACCGA 1 cut(s) 171
TasI AATT 3 cut(s) 278, 387, 406
Tru1I TTAA 3 cut(s) 135, 374, 415
Tru9I TTAA 3 cut(s) 135, 374, 415
TspDTI ATGAA 1 cut(s) 235
TspGWI ACGGA 1 cut(s) 222
XapI RAATTY 2 cut(s) 278, 406
XhoI CTCGAG 1 cut(s) 75
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.