pycom08g08250

The light-harvesting complex (LHC) functions as a light receptor, it captures and delivers excitation energy to photosystems with which it is closely associated

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
Physical Location & Seq
Forward (+)
6629378 .. 6629820
443 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g08250.2

Sequence Viewer

Length: 312 bp
ATGTCCGTTATCCTTTGTAATAAGAAGATATTGAAGCCCTCATTTGGTGTCGGGCATGGCAAACCAACAGCTCGAGGTTTTTCCCGACACGTAGCTCAAGCACAAGTGCGCCCTACATGGCTCTCTGGGCTTGACCCACCAGCCTACCTTGACCGAAGGACGGAAAGCTTGAGGTTGTATGTGCAGGCAGAGCTGGTTCATGCTCGCCTTGCAATCCTTGGAGTTGCAGGAATTCTTCTCACAGATGTAAGAGCAACATGGTATTCTGCCTTTTTTTTCTTTTCTTTCTGTGGACTCATTAGAAAATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

11.55

Weight (kDa)

10.43

Isoelectric Point (pI)

35.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0028662)

Species Orthologous Gene IDs
malus_domestica MD08G1101900.v1.1
pyrus_communis pycom08g08250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 231, 305
AfiI CCNNNNNNNGG 2 cut(s) 44, 160
AflIII ACRYGT 1 cut(s) 88
AgsI TTSAA 1 cut(s) 34
AluBI AGCT 4 cut(s) 71, 95, 168, 193
AluI AGCT 4 cut(s) 71, 95, 168, 193
Ama87I CYCGRG 1 cut(s) 72
ApoI RAATTY 2 cut(s) 231, 305
AspLEI GCGC 1 cut(s) 111
AvaI CYCGRG 1 cut(s) 72
BmeT110I CYCGRG 1 cut(s) 72
BpuEI CTTGAG 2 cut(s) 81, 190
BsaAI YACGTR 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 217
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 160
BseDI CCNNGG 1 cut(s) 217
BseLI CCNNNNNNNGG 2 cut(s) 44, 160
BsgI GTGCAG 1 cut(s) 203
BsiHKCI CYCGRG 1 cut(s) 72
BslI CCNNNNNNNGG 2 cut(s) 44, 160
BsoBI CYCGRG 1 cut(s) 72
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
BstBAI YACGTR 1 cut(s) 91
BstC8I GCNNGC 2 cut(s) 186, 205
BstHHI GCGC 1 cut(s) 111
BstMWI GCNNNNNNNGC 3 cut(s) 127, 190, 209
Cac8I GCNNGC 2 cut(s) 186, 205
CfoI GCGC 1 cut(s) 111
CviAII CATG 4 cut(s) 56, 117, 200, 258
CviJI RGCY 8 cut(s) 37, 71, 95, 121, 130, 143, 168, 193
CviKI_1 RGCY 8 cut(s) 37, 71, 95, 121, 130, 143, 168, 193
Eco130I CCWWGG 1 cut(s) 217
Eco88I CYCGRG 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 231
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 4 cut(s) 59, 120, 203, 261
FaiI YATR 5 cut(s) 57, 118, 180, 201, 259
FatI CATG 4 cut(s) 55, 116, 199, 257
GlaI GCGC 1 cut(s) 110
HhaI GCGC 1 cut(s) 111
Hin1II CATG 4 cut(s) 59, 120, 203, 261
Hin6I GCGC 1 cut(s) 109
HinP1I GCGC 1 cut(s) 109
HindIII AAGCTT 1 cut(s) 166
HinfI GANTC 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 293
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 90
HpyCH4V TGCA 3 cut(s) 184, 212, 227
HpyF10VI GCNNNNNNNGC 3 cut(s) 127, 190, 209
HpySE526I ACGT 1 cut(s) 90
Hsp92II CATG 4 cut(s) 59, 120, 203, 261
HspAI GCGC 1 cut(s) 109
LpnPI CCDG 5 cut(s) 111, 153, 170, 179, 213
MaeII ACGT 1 cut(s) 90
MboII GAAGA 2 cut(s) 37, 227
MluCI AATT 2 cut(s) 231, 305
MlyI GAGTC 1 cut(s) 288
MnlI CCTC 3 cut(s) 49, 68, 165
MwoI GCNNNNNNNGC 3 cut(s) 127, 190, 209
NlaIII CATG 4 cut(s) 59, 120, 203, 261
PaeR7I CTCGAG 1 cut(s) 72
PleI GAGTC 1 cut(s) 288
PpsI GAGTC 1 cut(s) 288
Ppu21I YACGTR 1 cut(s) 91
PspXI VCTCGAGB 1 cut(s) 72
SchI GAGTC 1 cut(s) 288
SetI ASST 8 cut(s) 73, 79, 93, 97, 150, 170, 176, 195
Sfr274I CTCGAG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 3 cut(s) 72, 96, 169
SmoI CTYRAG 3 cut(s) 72, 96, 169
Sse9I AATT 2 cut(s) 231, 305
StyI CCWWGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 93
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 168
TasI AATT 2 cut(s) 231, 305
TspDTI ATGAA 1 cut(s) 188
TspGWI ACGGA 1 cut(s) 176
XapI RAATTY 2 cut(s) 231, 305
XhoI CTCGAG 1 cut(s) 72
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.