Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0023557

Physical Location & Seq

Genomic Coordinates Forward (+)

12345759 .. 12346138

Gene Structure 380 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1130800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGGTGGAGGACGATTGTGCCGACAACGGGATCCCTCTGCCCAACGTCACCAGCAAGATCTTGGCGAAGGTCATTGAGTACTGCCGGAAGCACGTCGAGGCCGCTAAACCCGAAGAACGCCCCGCCATCGATGAAGACCTCAAGGCTTGGGACGCCGAATTCGTCAAGGTTGACCAGATCGCGGTTTTCGATCTCATCCTGGCTGCGAATTATTTAAACATAAAGAGCTTGCTGGACCTGACTTGCCAAACAGTGGCGATCATCACTGACCCGCAGCTCATGGGCCAGACCTCCCTCTTCCGCCTAAATCACTCGCTTCCGAATTGGCGCACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

112

Amino Acids

12.49

Weight (kDa)

4.74

Isoelectric Point (pI)

27.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	1 - 32	1.3e-14	Skp1 family, tetramerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023557)

Species	Orthologous Gene IDs
malus_domestica	MD08G1130800.v1.1 MD15G1008400.v1.1
pyrus_communis	pycom15g00700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	253
AccII	CGCG	1 cut(s)	182
AciI	CCGC	5 cut(s)	102, 123, 182, 272, 301
AclWI	GGATC	2 cut(s)	25, 38
AcsI	RAATTY	1 cut(s)	158
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	1 cut(s)	80
AfiI	CCNNNNNNNGG	3 cut(s)	27, 181, 253
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	1 cut(s)	198
AluBI	AGCT	2 cut(s)	228, 277
AluI	AGCT	2 cut(s)	228, 277
AlwI	GGATC	2 cut(s)	25, 38
AoxI	GGCC	2 cut(s)	99, 283
ApeKI	GCWGC	2 cut(s)	203, 274
ApoI	RAATTY	1 cut(s)	158
ArsI	GACNNNNNNTTYG	2 cut(s)	143, 175
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	2 cut(s)	235, 283
AsuHPI	GGTGA	1 cut(s)	40
AvaII	GGWCC	1 cut(s)	235
BamHI	GGATCC	1 cut(s)	30
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	2 cut(s)	190, 286
BccI	CCATC	1 cut(s)	134
BciT130I	CCWGG	1 cut(s)	200
BglII	AGATCT	1 cut(s)	57
BisI	GCNGC	3 cut(s)	102, 204, 275
BlsI	GCNGC	3 cut(s)	103, 205, 276
BmcAI	AGTACT	1 cut(s)	80
Bme1390I	CCNGG	1 cut(s)	200
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	235, 283
BmiI	GGNNCC	1 cut(s)	32
BmrFI	CCNGG	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	153
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 181, 253
BseBI	CCWGG	1 cut(s)	200
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	3 cut(s)	27, 181, 253
BseXI	GCAGC	2 cut(s)	190, 286
Bsh1236I	CGCG	1 cut(s)	182
BshFI	GGCC	2 cut(s)	101, 285
BshVI	ATCGAT	1 cut(s)	129
BsiSI	CCGG	1 cut(s)	85
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	3 cut(s)	27, 181, 253
BsmFI	GGGAC	1 cut(s)	164
BsnI	GGCC	2 cut(s)	101, 285
Bsp143I	GATC	5 cut(s)	30, 57, 177, 190, 258
BspACI	CCGC	5 cut(s)	102, 123, 182, 272, 301
BspANI	GGCC	2 cut(s)	101, 285
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	1 cut(s)	182
BspLI	GGNNCC	1 cut(s)	32
BspPI	GGATC	2 cut(s)	25, 38
BssMI	GATC	5 cut(s)	30, 57, 177, 190, 258
BssNI	GRCGYC	1 cut(s)	153
Bst2UI	CCWGG	1 cut(s)	200
Bst4CI	ACNGT	1 cut(s)	253
Bst6I	CTCTTC	1 cut(s)	302
BstACI	GRCGYC	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	230
BstF5I	GGATG	1 cut(s)	195
BstFNI	CGCG	1 cut(s)	182
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	5 cut(s)	33, 60, 180, 193, 261
BstMBI	GATC	5 cut(s)	30, 57, 177, 190, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	152
BstNI	CCWGG	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	198
BstUI	CGCG	1 cut(s)	182
BstV1I	GCAGC	2 cut(s)	190, 286
BstV2I	GAAGAC	1 cut(s)	141
BstX2I	RGATCY	2 cut(s)	30, 57
BstYI	RGATCY	2 cut(s)	30, 57
Bsu15I	ATCGAT	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	101, 285
BsuTUI	ATCGAT	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	195
BtsIMutI	CAGTG	2 cut(s)	258, 264
Cac8I	GCNNGC	1 cut(s)	230
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	2 cut(s)	235, 283
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	1 cut(s)	79
CviAII	CATG	1 cut(s)	280
CviJI	RGCY	6 cut(s)	101, 146, 203, 228, 277, 285
CviKI_1	RGCY	6 cut(s)	101, 146, 203, 228, 277, 285
CviQI	GTAC	1 cut(s)	79
DpnI	GATC	5 cut(s)	32, 59, 179, 192, 260
DpnII	GATC	5 cut(s)	30, 57, 177, 190, 258
DraI	TTTAAA	1 cut(s)	216
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
EciI	GGCGGA	1 cut(s)	290
Eco47I	GGWCC	1 cut(s)	235
EcoRI	GAATTC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	198
FaeI	CATG	1 cut(s)	283
FaiI	YATR	2 cut(s)	221, 281
FaqI	GGGAC	1 cut(s)	164
FatI	CATG	1 cut(s)	279
FauI	CCCGC	2 cut(s)	130, 279
Fnu4HI	GCNGC	3 cut(s)	102, 204, 275
FokI	GGATG	1 cut(s)	182
Fsp4HI	GCNGC	3 cut(s)	102, 204, 275
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	3 cut(s)	102, 204, 275
HaeIII	GGCC	2 cut(s)	101, 285
HapII	CCGG	1 cut(s)	85
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	330
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	1 cut(s)	283
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HpaII	CCGG	1 cut(s)	85
HphI	GGTGA	1 cut(s)	40
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	1 cut(s)	321
Hpy8I	GTNNAC	1 cut(s)	172
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	1 cut(s)	61
HpyCH4III	ACNGT	1 cut(s)	253
HpyCH4IV	ACGT	2 cut(s)	45, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	152
HpySE526I	ACGT	2 cut(s)	45, 93
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	1 cut(s)	283
HspAI	GCGC	1 cut(s)	328
Kzo9I	GATC	5 cut(s)	30, 57, 177, 190, 258
LpnPI	CCDG	8 cut(s)	64, 98, 185, 188, 212, 218, 251, 299
Lsp1109I	GCAGC	2 cut(s)	190, 286
MaeII	ACGT	2 cut(s)	45, 93
MaeIII	GTNAC	1 cut(s)	46
MalI	GATC	5 cut(s)	32, 59, 179, 192, 260
MboI	GATC	5 cut(s)	30, 57, 177, 190, 258
MboII	GAAGA	3 cut(s)	125, 146, 289
MflI	RGATCY	2 cut(s)	30, 57
MluCI	AATT	3 cut(s)	158, 208, 322
MnlI	CCTC	5 cut(s)	45, 91, 149, 301, 305
MseI	TTAA	1 cut(s)	215
MspI	CCGG	1 cut(s)	85
MspR9I	CCNGG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	200
MvnI	CGCG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	152
NdeII	GATC	5 cut(s)	30, 57, 177, 190, 258
NlaIII	CATG	1 cut(s)	283
NlaIV	GGNNCC	1 cut(s)	32
NmuCI	GTSAC	1 cut(s)	46
PcsI	WCGNNNNNNNCGW	3 cut(s)	18, 159, 186
PflMI	CCANNNNNTGG	1 cut(s)	253
PkrI	GCNGC	3 cut(s)	103, 205, 276
Psp6I	CCWGG	1 cut(s)	198
PspGI	CCWGG	1 cut(s)	198
PspN4I	GGNNCC	1 cut(s)	32
PspPI	GGNCC	2 cut(s)	235, 283
PsuI	RGATCY	2 cut(s)	30, 57
RsaI	GTAC	1 cut(s)	80
RsaNI	GTAC	1 cut(s)	79
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	3 cut(s)	102, 204, 275
Sau3AI	GATC	5 cut(s)	30, 57, 177, 190, 258
Sau96I	GGNCC	2 cut(s)	235, 283
ScaI	AGTACT	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	200
SetI	ASST	9 cut(s)	48, 72, 96, 141, 171, 230, 240, 279, 293
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	158, 208, 322
SsiI	CCGC	5 cut(s)	102, 123, 182, 272, 301
StyD4I	CCNGG	1 cut(s)	198
TaaI	ACNGT	1 cut(s)	253
TaiI	ACGT	2 cut(s)	48, 96
TaqI	TCGA	3 cut(s)	96, 129, 189
TasI	AATT	3 cut(s)	158, 208, 322
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	1 cut(s)	104
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	2 cut(s)	258, 271
TseFI	GTSAC	1 cut(s)	46
TseI	GCWGC	2 cut(s)	203, 274
Tsp45I	GTSAC	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	147
TspRI	CASTG	2 cut(s)	258, 271
Van91I	CCANNNNNTGG	1 cut(s)	253
VpaK11BI	GGWCC	1 cut(s)	235
XapI	RAATTY	1 cut(s)	158
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
ZrmI	AGTACT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.