Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0023557

Physical Location & Seq

Genomic Coordinates Reverse (-)

449936 .. 451312

Gene Structure 1377 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1008400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 471 bp

ATGTCGTCGGAGAGGAAGATAACTCTGAAGAGCTCGGACGGGGAGACTTTTGAGGTGGACGAGGCGGTGGCTTTGGAGTCTCAGACGATAAAGCACATGGTGGAGGACGATTGTGCCGACAACGGGATCCCTCTGCCCAACGTCACCAGCAAGATCTTGGCGAAGGTCATCGAGTACTGCCGGAAGCACGTCGAGGCCGCTAAGCCCGAAGAACGCCCTGCCGTCGATGAAGACCTCAAGGCTTGGGACGCCGAATTCGTCAAGGTCGACCAGGCCACGCTTTTCGATCTCATCCTGGCTGCAAATTATTTGAACATAAAGAGCTTGCTGGACCTGACTTGCCAAACAGTGGCGGACATGATCAAGGGAAAAACACCTGAGGAGATTCGCAAGACGTTCAACATTAAGAACGACTTTACTCCCGAGGAAGAGGAGGAGGTCCGCAGGGAGAACCAATGGGCTTTTGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0006508 GO:0006511 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0019538 GO:0019941 GO:0022414 GO:0030163 GO:0032501 GO:0032502 GO:0043170 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0051603 GO:0061458 GO:0071704 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 ko04114 ko04120 ko04141 ko04310 ko04341 ko04350 ko04710 ko05168 ko05200 map04110 map04111 map04114 map04120 map04141 map04310 map04341 map04350 map04710 map05168 map05200

Pfam Domains

Protein Families

Skp1 Skp1_POZ

Protein Analysis

157

Amino Acids

17.78

Weight (kDa)

4.6

Isoelectric Point (pI)

42.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Skp1_POZ	PF03931	6 - 64	4.7e-31	Skp1 family, tetramerisation domain
Skp1	PF01466	107 - 154	1.1e-31	Skp1 family, dimerisation domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023557)

Species	Orthologous Gene IDs
malus_domestica	MD08G1130800.v1.1 MD15G1008400.v1.1
pyrus_communis	pycom15g00700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	4 cut(s)	65, 198, 353, 442
AclWI	GGATC	2 cut(s)	121, 134
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	249
AdeI	CACNNNGTG	1 cut(s)	100
AfaI	GTAC	1 cut(s)	176
AfiI	CCNNNNNNNGG	2 cut(s)	123, 349
AgsI	TTSAA	2 cut(s)	313, 400
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	2 cut(s)	270, 294
AluBI	AGCT	2 cut(s)	33, 324
AluI	AGCT	2 cut(s)	33, 324
Alw21I	GWGCWC	1 cut(s)	35
Alw26I	GTCTC	2 cut(s)	38, 84
AlwI	GGATC	2 cut(s)	121, 134
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	195, 273
ApeKI	GCWGC	1 cut(s)	299
ApoI	RAATTY	1 cut(s)	254
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspS9I	GGNCC	2 cut(s)	331, 439
AsuHPI	GGTGA	1 cut(s)	136
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	2 cut(s)	331, 439
AxyI	CCTNAGG	1 cut(s)	378
BamHI	GGATCC	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	35
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	35
BbvI	GCAGC	1 cut(s)	286
BceAI	ACGGC	1 cut(s)	206
BciT130I	CCWGG	2 cut(s)	272, 296
BclI	TGATCA	1 cut(s)	360
BcoDI	GTCTC	2 cut(s)	38, 84
BglII	AGATCT	1 cut(s)	153
BisI	GCNGC	2 cut(s)	198, 300
BlpI	GCTNAGC	1 cut(s)	201
BlsI	GCNGC	2 cut(s)	199, 301
BmcAI	AGTACT	1 cut(s)	176
Bme1390I	CCNGG	2 cut(s)	272, 296
Bme18I	GGWCC	2 cut(s)	331, 439
BmeT110I	CYCGRG	1 cut(s)	422
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	331, 439
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	272, 296
BpiI	GAAGAC	1 cut(s)	237
Bpu1102I	GCTNAGC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	221
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	2 cut(s)	123, 349
Bse21I	CCTNAGG	1 cut(s)	378
BseBI	CCWGG	2 cut(s)	272, 296
BseDI	CCNNGG	1 cut(s)	423
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	123, 349
BseMII	CTCAG	2 cut(s)	95, 369
BseRI	GAGGAG	3 cut(s)	395, 446, 449
BseXI	GCAGC	1 cut(s)	286
BshFI	GGCC	2 cut(s)	197, 275
BsiHKAI	GWGCWC	1 cut(s)	35
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	1 cut(s)	260
BslI	CCNNNNNNNGG	2 cut(s)	123, 349
BsmAI	GTCTC	2 cut(s)	38, 84
BsmFI	GGGAC	1 cut(s)	260
BsnI	GGCC	2 cut(s)	197, 275
BsoBI	CYCGRG	1 cut(s)	422
Bsp1286I	GDGCHC	1 cut(s)	35
Bsp143I	GATC	4 cut(s)	126, 153, 286, 360
Bsp1720I	GCTNAGC	1 cut(s)	201
BspACI	CCGC	4 cut(s)	65, 198, 353, 442
BspANI	GGCC	2 cut(s)	197, 275
BspCNI	CTCAG	2 cut(s)	94, 370
BspLI	GGNNCC	1 cut(s)	128
BspPI	GGATC	2 cut(s)	121, 134
BspQI	GCTCTTC	1 cut(s)	23
BssECI	CCNNGG	1 cut(s)	423
BssMI	GATC	4 cut(s)	126, 153, 286, 360
BssNI	GRCGYC	1 cut(s)	249
Bst2UI	CCWGG	2 cut(s)	272, 296
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	23, 423
BstACI	GRCGYC	1 cut(s)	249
BstC8I	GCNNGC	1 cut(s)	326
BstDEI	CTNAG	3 cut(s)	81, 201, 378
BstF5I	GGATG	1 cut(s)	291
BstKTI	GATC	4 cut(s)	129, 156, 289, 363
BstMAI	GTCTC	2 cut(s)	38, 84
BstMBI	GATC	4 cut(s)	126, 153, 286, 360
BstMWI	GCNNNNNNNGC	1 cut(s)	248
BstNI	CCWGG	2 cut(s)	272, 296
BstSCI	CCNGG	2 cut(s)	270, 294
BstV1I	GCAGC	1 cut(s)	286
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	2 cut(s)	126, 153
BstYI	RGATCY	2 cut(s)	126, 153
Bsu36I	CCTNAGG	1 cut(s)	378
BsuRI	GGCC	2 cut(s)	197, 275
BtrI	CACGTC	1 cut(s)	190
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	354
Cac8I	GCNNGC	1 cut(s)	326
Cfr13I	GGNCC	2 cut(s)	331, 439
CseI	GACGC	1 cut(s)	257
Csp6I	GTAC	1 cut(s)	175
CviAII	CATG	2 cut(s)	97, 358
CviJI	RGCY	9 cut(s)	33, 71, 197, 205, 242, 275, 299, 324, 461
CviKI_1	RGCY	9 cut(s)	33, 71, 197, 205, 242, 275, 299, 324, 461
CviQI	GTAC	1 cut(s)	175
DdeI	CTNAG	3 cut(s)	81, 201, 378
DpnI	GATC	4 cut(s)	128, 155, 288, 362
DpnII	GATC	4 cut(s)	126, 153, 286, 360
DraIII	CACNNNGTG	1 cut(s)	100
Eam1104I	CTCTTC	2 cut(s)	23, 423
EarI	CTCTTC	2 cut(s)	23, 423
EciI	GGCGGA	1 cut(s)	368
Ecl136II	GAGCTC	1 cut(s)	33
Eco24I	GRGCYC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	331, 439
Eco53kI	GAGCTC	1 cut(s)	33
Eco57I	CTGAAG	1 cut(s)	47
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	1 cut(s)	422
EcoICRI	GAGCTC	1 cut(s)	33
EcoRI	GAATTC	1 cut(s)	254
EcoRII	CCWGG	2 cut(s)	270, 294
EcoT38I	GRGCYC	1 cut(s)	35
FaeI	CATG	2 cut(s)	100, 361
FaiI	YATR	3 cut(s)	98, 317, 359
FalI	AAGNNNNNCTT	2 cut(s)	398, 430
FaqI	GGGAC	1 cut(s)	260
FatI	CATG	2 cut(s)	96, 357
FbaI	TGATCA	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	2 cut(s)	198, 300
FokI	GGATG	1 cut(s)	278
FriOI	GRGCYC	1 cut(s)	35
Fsp4HI	GCNGC	2 cut(s)	198, 300
GluI	GCNGC	2 cut(s)	198, 300
HaeIII	GGCC	2 cut(s)	197, 275
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	1 cut(s)	257
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	2 cut(s)	100, 361
HincII	GTYRAC	1 cut(s)	268
HindII	GTYRAC	1 cut(s)	268
HinfI	GANTC	2 cut(s)	77, 385
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	58, 268
Hpy188I	TCNGA	4 cut(s)	10, 27, 37, 84
Hpy188III	TCNNGA	1 cut(s)	422
Hpy8I	GTNNAC	2 cut(s)	58, 268
Hpy99I	CGWCG	3 cut(s)	10, 194, 227
HpyAV	CCTTC	1 cut(s)	157
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	3 cut(s)	141, 189, 395
HpyCH4V	TGCA	1 cut(s)	302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	248
HpyF3I	CTNAG	3 cut(s)	81, 201, 378
HpySE526I	ACGT	3 cut(s)	141, 189, 395
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	2 cut(s)	100, 361
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	4 cut(s)	126, 153, 286, 360
LguI	GCTCTTC	1 cut(s)	23
Lsp1109I	GCAGC	1 cut(s)	286
MaeII	ACGT	3 cut(s)	141, 189, 395
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	4 cut(s)	128, 155, 288, 362
MboI	GATC	4 cut(s)	126, 153, 286, 360
MboII	GAAGA	5 cut(s)	28, 40, 221, 242, 440
MflI	RGATCY	2 cut(s)	126, 153
MhlI	GDGCHC	1 cut(s)	35
MluCI	AATT	2 cut(s)	254, 304
MlyI	GAGTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	405
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	2 cut(s)	272, 296
MvaI	CCWGG	2 cut(s)	272, 296
MwoI	GCNNNNNNNGC	1 cut(s)	248
NdeII	GATC	4 cut(s)	126, 153, 286, 360
NlaIII	CATG	2 cut(s)	100, 361
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	142
PciSI	GCTCTTC	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	3 cut(s)	114, 255, 264
PfeI	GAWTC	1 cut(s)	385
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	2 cut(s)	199, 301
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Psp124BI	GAGCTC	1 cut(s)	35
Psp6I	CCWGG	2 cut(s)	270, 294
PspGI	CCWGG	2 cut(s)	270, 294
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	2 cut(s)	331, 439
PsuI	RGATCY	2 cut(s)	126, 153
RsaI	GTAC	1 cut(s)	176
RsaNI	GTAC	1 cut(s)	175
SacI	GAGCTC	1 cut(s)	35
SalI	GTCGAC	1 cut(s)	266
SapI	GCTCTTC	1 cut(s)	23
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	2 cut(s)	198, 300
Sau3AI	GATC	4 cut(s)	126, 153, 286, 360
Sau96I	GGNCC	2 cut(s)	331, 439
ScaI	AGTACT	1 cut(s)	176
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	2 cut(s)	272, 296
SduI	GDGCHC	1 cut(s)	35
SinI	GGWCC	2 cut(s)	331, 439
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
Sse9I	AATT	2 cut(s)	254, 304
SsiI	CCGC	4 cut(s)	65, 198, 353, 442
SstI	GAGCTC	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	270, 294
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	3 cut(s)	144, 192, 398
TaqI	TCGA	5 cut(s)	171, 192, 225, 267, 285
TasI	AATT	2 cut(s)	254, 304
TatI	WGTACW	1 cut(s)	174
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	354
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	1 cut(s)	299
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	354
Van91I	CCANNNNNTGG	1 cut(s)	349
VpaK11BI	GGWCC	2 cut(s)	331, 439
XapI	RAATTY	1 cut(s)	254
XcmI	CCANNNNNNNNNTGG	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	267
ZrmI	AGTACT	1 cut(s)	176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.