Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028659

Physical Location & Seq

Genomic Coordinates Forward (+)

12879312 .. 12882025

Gene Structure 2714 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1135700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCGGTGTGTAATTCTTGTTAATGTCGTGATGCAGCATGTCGCCCTTGATATTTGTATTGGTTTGGCAAAGAGGACTTCCATGTTTGATGATCCTACCAGGGAGATTCAAGAGACTACTATAGTCATCAATGGCATGAGTAGTCATTCAACAATAGTTGTTGATGACTTGAAAAATCGGCTGATGAGTGCCACAAAAGAGTTTAAAGAAAACATGGAAGACACATTAACGAACATAGAGGGCACACAAGGGGTGTTGCTCAAGTATCTGAATAGCATATCATCCAACAGGTGGTTGATGATCAAGATATTCTTTGTACTAATATTTTTCCTCATGGTTTTCCTTTTTTTTTTTTGTGGCATAGTCATTTGTAGAGAGAGAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

129

Amino Acids

14.79

Weight (kDa)

6.11

Isoelectric Point (pI)

27.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	70 - 115	5.7e-12	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0028659)

Species	Orthologous Gene IDs
malus_domestica	MD08G1135700.v1.1
pyrus_communis	pycom07g08490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	291
AciI	CCGC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	86
AfaI	GTAC	1 cut(s)	318
AfiI	CCNNNNNNNGG	1 cut(s)	291
AgsI	TTSAA	3 cut(s)	110, 150, 172
AjnI	CCWGG	1 cut(s)	98
Alw26I	GTCTC	1 cut(s)	107
AlwI	GGATC	1 cut(s)	86
ApeKI	GCWGC	1 cut(s)	34
BaeGI	GKGCMC	1 cut(s)	245
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	1 cut(s)	46
BciT130I	CCWGG	1 cut(s)	100
BclI	TGATCA	1 cut(s)	300
BcoDI	GTCTC	1 cut(s)	107
BfmI	CTRYAG	1 cut(s)	120
BisI	GCNGC	1 cut(s)	35
BlsI	GCNGC	1 cut(s)	36
Bme1390I	CCNGG	1 cut(s)	100
BmrFI	CCNGG	1 cut(s)	100
BmsI	GCATC	1 cut(s)	21
BpiI	GAAGAC	1 cut(s)	225
BpuEI	CTTGAG	1 cut(s)	245
BsaJI	CCNNGG	1 cut(s)	99
Bsc4I	CCNNNNNNNGG	1 cut(s)	291
BseBI	CCWGG	1 cut(s)	100
BseDI	CCNNGG	1 cut(s)	99
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	291
BseSI	GKGCMC	1 cut(s)	245
BseXI	GCAGC	1 cut(s)	46
BslI	CCNNNNNNNGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	2 cut(s)	91, 300
BspACI	CCGC	1 cut(s)	4
BspPI	GGATC	1 cut(s)	86
BssECI	CCNNGG	1 cut(s)	99
BssMI	GATC	2 cut(s)	91, 300
Bst2UI	CCWGG	1 cut(s)	100
BstF5I	GGATG	1 cut(s)	281
BstKTI	GATC	2 cut(s)	94, 303
BstMAI	GTCTC	1 cut(s)	107
BstMBI	GATC	2 cut(s)	91, 300
BstNI	CCWGG	1 cut(s)	100
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	98
BstSFI	CTRYAG	1 cut(s)	120
BstSLI	GKGCMC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	46
BstV2I	GAAGAC	1 cut(s)	225
BtsCI	GGATG	1 cut(s)	281
Csp6I	GTAC	1 cut(s)	317
CviAII	CATG	5 cut(s)	38, 82, 136, 214, 334
CviJI	RGCY	1 cut(s)	181
CviKI_1	RGCY	1 cut(s)	181
CviQI	GTAC	1 cut(s)	317
DpnI	GATC	2 cut(s)	93, 302
DpnII	GATC	2 cut(s)	91, 300
DraI	TTTAAA	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	98
FaeI	CATG	5 cut(s)	41, 85, 139, 217, 337
FaiI	YATR	9 cut(s)	39, 83, 122, 137, 215, 236, 278, 335, 362
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FatI	CATG	5 cut(s)	37, 81, 135, 213, 333
FbaI	TGATCA	1 cut(s)	300
Fnu4HI	GCNGC	1 cut(s)	35
FokI	GGATG	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	35
GluI	GCNGC	1 cut(s)	35
Hin1II	CATG	5 cut(s)	41, 85, 139, 217, 337
HinfI	GANTC	1 cut(s)	106
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	28, 110, 304
HpyCH4V	TGCA	1 cut(s)	34
Hsp92II	CATG	5 cut(s)	41, 85, 139, 217, 337
Ksp22I	TGATCA	1 cut(s)	300
Kzo9I	GATC	2 cut(s)	91, 300
LpnPI	CCDG	3 cut(s)	85, 112, 274
Lsp1109I	GCAGC	1 cut(s)	46
LweI	GCATC	1 cut(s)	21
MalI	GATC	2 cut(s)	93, 302
MboI	GATC	2 cut(s)	91, 300
MboII	GAAGA	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	1 cut(s)	12
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	3 cut(s)	66, 232, 341
MseI	TTAA	3 cut(s)	21, 204, 227
MspR9I	CCNGG	1 cut(s)	100
MvaI	CCWGG	1 cut(s)	100
NdeII	GATC	2 cut(s)	91, 300
NlaIII	CATG	5 cut(s)	41, 85, 139, 217, 337
NspI	RCATGY	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	106
PflMI	CCANNNNNTGG	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	36
Psp6I	CCWGG	1 cut(s)	98
PspGI	CCWGG	1 cut(s)	98
RsaI	GTAC	1 cut(s)	318
RsaNI	GTAC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	21, 204, 227
SatI	GCNGC	1 cut(s)	35
Sau3AI	GATC	2 cut(s)	91, 300
ScrFI	CCNGG	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	245
SetI	ASST	1 cut(s)	293
SfaNI	GCATC	1 cut(s)	21
SfcI	CTRYAG	1 cut(s)	120
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	1 cut(s)	12
SsiI	CCGC	1 cut(s)	4
SspI	AATATT	1 cut(s)	324
StyD4I	CCNGG	1 cut(s)	98
TasI	AATT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	106
Tru1I	TTAA	3 cut(s)	21, 204, 227
Tru9I	TTAA	3 cut(s)	21, 204, 227
TseI	GCWGC	1 cut(s)	34
Van91I	CCANNNNNTGG	1 cut(s)	291
XceI	RCATGY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.