Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0028659

Physical Location & Seq

Genomic Coordinates Forward (+)

7818766 .. 7819038

Gene Structure 273 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g08490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 273 bp

ATGTGGTGCCTATGCATCTGTTCGGTGTTTGGTCTTGGATTTTCAAAATTTAATTTTGATGCTGGTATTTCTTCTGGCAGAATTGATGAAAACATGGAAGACACATTAGCGAACGTAGAGGGCGCACAAGGGGCATTGCTCAAGTATCTGAATAGCATATCATCAAACAGATGGCTGATCGATCAAGATATTCTTTATACTAATATTTTTCCTCATGGTTTTCCTATTTTTTGTGGCATAGTCATTTGCAGACAGAGAGAGAGAGAGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

91

Amino Acids

10.16

Weight (kDa)

4.87

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	27 - 59	1.6e-08	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0028659)

Species	Orthologous Gene IDs
malus_domestica	MD08G1135700.v1.1
pyrus_communis	pycom07g08490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	6
AcsI	RAATTY	1 cut(s)	47
AgsI	TTSAA	1 cut(s)	45
AluBI	AGCT	1 cut(s)	270
AluI	AGCT	1 cut(s)	270
ApoI	RAATTY	1 cut(s)	47
AspLEI	GCGC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	6
BbsI	GAAGAC	1 cut(s)	105
BccI	CCATC	1 cut(s)	165
BmiI	GGNNCC	1 cut(s)	8
BmsI	GCATC	2 cut(s)	24, 49
BpiI	GAAGAC	1 cut(s)	105
BpuEI	CTTGAG	1 cut(s)	125
Bsa29I	ATCGAT	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	134
BseCI	ATCGAT	1 cut(s)	180
BseMI	GCAATG	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	6
BshVI	ATCGAT	1 cut(s)	180
Bsp143I	GATC	2 cut(s)	177, 181
BspDI	ATCGAT	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	8
BspT107I	GGYRCC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	134
BssMI	GATC	2 cut(s)	177, 181
BstHHI	GCGC	1 cut(s)	125
BstKTI	GATC	2 cut(s)	180, 184
BstMBI	GATC	2 cut(s)	177, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	131
BstV2I	GAAGAC	1 cut(s)	105
Bsu15I	ATCGAT	1 cut(s)	180
BsuTUI	ATCGAT	1 cut(s)	180
CfoI	GCGC	1 cut(s)	125
ClaI	ATCGAT	1 cut(s)	180
CviAII	CATG	2 cut(s)	94, 215
CviJI	RGCY	2 cut(s)	175, 270
CviKI_1	RGCY	2 cut(s)	175, 270
DpnI	GATC	2 cut(s)	179, 183
DpnII	GATC	2 cut(s)	177, 181
EcoT22I	ATGCAT	1 cut(s)	17
FaeI	CATG	2 cut(s)	97, 218
FaiI	YATR	6 cut(s)	13, 95, 158, 198, 216, 239
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	2 cut(s)	93, 214
GlaI	GCGC	1 cut(s)	124
HhaI	GCGC	1 cut(s)	125
Hin1II	CATG	2 cut(s)	97, 218
Hin6I	GCGC	1 cut(s)	123
HinP1I	GCGC	1 cut(s)	123
Hpy188I	TCNGA	1 cut(s)	150
Hpy188III	TCNNGA	1 cut(s)	185
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	2 cut(s)	15, 249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	2 cut(s)	97, 218
HspAI	GCGC	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	177, 181
LpnPI	CCDG	2 cut(s)	48, 60
LweI	GCATC	2 cut(s)	24, 49
MaeII	ACGT	1 cut(s)	114
MalI	GATC	2 cut(s)	179, 183
MboI	GATC	2 cut(s)	177, 181
MboII	GAAGA	2 cut(s)	63, 110
MluCI	AATT	3 cut(s)	47, 52, 81
MnlI	CCTC	2 cut(s)	112, 222
Mph1103I	ATGCAT	1 cut(s)	17
MseI	TTAA	1 cut(s)	51
MwoI	GCNNNNNNNGC	1 cut(s)	131
NdeII	GATC	2 cut(s)	177, 181
NlaIII	CATG	2 cut(s)	97, 218
NlaIV	GGNNCC	1 cut(s)	8
NsiI	ATGCAT	1 cut(s)	17
PspN4I	GGNNCC	1 cut(s)	8
SaqAI	TTAA	1 cut(s)	51
Sau3AI	GATC	2 cut(s)	177, 181
SetI	ASST	2 cut(s)	117, 272
SfaNI	GCATC	2 cut(s)	24, 49
SgeI	CNNG	8 cut(s)	47, 75, 87, 106, 140, 154, 197, 227
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
Sse9I	AATT	3 cut(s)	47, 52, 81
SspI	AATATT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	180
TasI	AATT	3 cut(s)	47, 52, 81
Tru1I	TTAA	1 cut(s)	51
Tru9I	TTAA	1 cut(s)	51
TspDTI	ATGAA	1 cut(s)	102
XapI	RAATTY	1 cut(s)	47
Zsp2I	ATGCAT	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.