Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028639

Physical Location & Seq

Genomic Coordinates Forward (+)

15482649 .. 15482990

Gene Structure 342 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1151200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAACTGGTTTGGGATGTTGGAGATTTCATTTGAGTTGTCAGACTTGTCAAGGTGGCATTGCTCGGAACCTGGTTCCAAAGCTCACGGATGGCACACATTTTGTGGCGTGGCAACGATGGTTCTGATCGATGAGGTCAACCGTTTGGATTTGCCGAGATTAATTGATTGGTTGGTGTTTCAACAAGGGAAGGAATATGGATTTAGCGGGAGGACTAATAAACTGGTTGATTGTTGCATTACTACAAAAAATCATGTTCGGTTACTAACGAACAACTTTTTGAGGGGCATGCATTGCAGCTATACATACTTGTATGCTTACAGGAAGAGAAGGTTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

114

Amino Acids

13.34

Weight (kDa)

8.67

Isoelectric Point (pI)

37.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	22 - 79	1.3e-16	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0028639)

Species	Orthologous Gene IDs
malus_domestica	MD08G1151200.v1.1
pyrus_communis	pycom08g12730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AgsI	TTSAA	1 cut(s)	182
AjnI	CCWGG	1 cut(s)	70
AjuI	GAANNNNNNNTTGG	1 cut(s)	317
AluBI	AGCT	2 cut(s)	83, 300
AluI	AGCT	2 cut(s)	83, 300
ApeKI	GCWGC	1 cut(s)	297
AseI	ATTAAT	1 cut(s)	161
BbvI	GCAGC	1 cut(s)	309
BccI	CCATC	2 cut(s)	84, 112
BciT130I	CCWGG	1 cut(s)	72
BisI	GCNGC	1 cut(s)	298
BlsI	GCNGC	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	69, 76
BmrFI	CCNGG	1 cut(s)	72
Bsa29I	ATCGAT	1 cut(s)	129
Bse1I	ACTGG	2 cut(s)	11, 228
Bse3DI	GCAATG	2 cut(s)	58, 292
BseBI	CCWGG	1 cut(s)	72
BseCI	ATCGAT	1 cut(s)	129
BseGI	GGATG	2 cut(s)	21, 95
BseMI	GCAATG	2 cut(s)	58, 292
BseNI	ACTGG	2 cut(s)	11, 228
BseXI	GCAGC	1 cut(s)	309
BshVI	ATCGAT	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	69, 76
BsrDI	GCAATG	2 cut(s)	58, 292
BsrI	ACTGG	2 cut(s)	11, 228
BssMI	GATC	1 cut(s)	126
Bst2UI	CCWGG	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	320
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	1 cut(s)	290
BstF5I	GGATG	2 cut(s)	21, 95
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	72
BstNSI	RCATGY	1 cut(s)	292
BstSCI	CCNGG	1 cut(s)	70
BstV1I	GCAGC	1 cut(s)	309
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	2 cut(s)	21, 95
Cac8I	GCNNGC	1 cut(s)	290
ClaI	ATCGAT	1 cut(s)	129
CsiI	ACCWGGT	1 cut(s)	70
CviAII	CATG	2 cut(s)	254, 289
CviJI	RGCY	2 cut(s)	83, 300
CviKI_1	RGCY	2 cut(s)	83, 300
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
Eam1104I	CTCTTC	1 cut(s)	320
EarI	CTCTTC	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	70
EcoT22I	ATGCAT	1 cut(s)	294
FaeI	CATG	2 cut(s)	257, 292
FaiI	YATR	6 cut(s)	198, 255, 290, 303, 307, 315
FatI	CATG	2 cut(s)	253, 288
FauI	CCCGC	1 cut(s)	200
Fnu4HI	GCNGC	1 cut(s)	298
FokI	GGATG	2 cut(s)	28, 102
Fsp4HI	GCNGC	1 cut(s)	298
GluI	GCNGC	1 cut(s)	298
Hin1II	CATG	2 cut(s)	257, 292
HincII	GTYRAC	1 cut(s)	139
HindII	GTYRAC	1 cut(s)	139
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	3 cut(s)	43, 67, 126
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	184, 324
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4V	TGCA	3 cut(s)	237, 292, 297
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
Hsp92II	CATG	2 cut(s)	257, 292
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	4 cut(s)	57, 84, 209, 307
Lsp1109I	GCAGC	1 cut(s)	309
MabI	ACCWGGT	1 cut(s)	70
MaeIII	GTNAC	1 cut(s)	261
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	1 cut(s)	337
MluCI	AATT	1 cut(s)	162
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	3 cut(s)	127, 204, 276
Mph1103I	ATGCAT	1 cut(s)	294
MseI	TTAA	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	72
MvaI	CCWGG	1 cut(s)	72
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	2 cut(s)	257, 292
NlaIV	GGNNCC	2 cut(s)	69, 76
NmeAIII	GCCGAG	1 cut(s)	180
NsiI	ATGCAT	1 cut(s)	294
NspI	RCATGY	1 cut(s)	292
PaeI	GCATGC	1 cut(s)	292
PkrI	GCNGC	1 cut(s)	299
PshBI	ATTAAT	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	70
PspGI	CCWGG	1 cut(s)	70
PspN4I	GGNNCC	2 cut(s)	69, 76
SaqAI	TTAA	1 cut(s)	161
SatI	GCNGC	1 cut(s)	298
Sau3AI	GATC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	72
SetI	ASST	6 cut(s)	56, 73, 85, 138, 302, 335
SexAI	ACCWGGT	1 cut(s)	70
SphI	GCATGC	1 cut(s)	292
Sse9I	AATT	1 cut(s)	162
SsiI	CCGC	1 cut(s)	207
StyD4I	CCNGG	1 cut(s)	70
TaaI	ACNGT	1 cut(s)	143
TaqI	TCGA	1 cut(s)	129
TasI	AATT	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TseI	GCWGC	1 cut(s)	297
TspDTI	ATGAA	2 cut(s)	17, 18
TspGWI	ACGGA	1 cut(s)	102
VspI	ATTAAT	1 cut(s)	161
XceI	RCATGY	1 cut(s)	292
Zsp2I	ATGCAT	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.