Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0028639

Physical Location & Seq

Genomic Coordinates Forward (+)

11295632 .. 11296094

Gene Structure 463 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g12730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTTCTGCACAACTACCGTTTATCAATATACAAGAAATATTCAGCCAACTTCTTCCTTCATACACTATTCCCAGGAACTACCTGCTAACTCTTTTATTTTGGAGAAATTGACGCCCGAGCTTGCTAGACTGCAATTTCTGTTATTTCATTTGAGTTGTCAGACTTGTGAAGGTGGCATTGCCGCGGAACCTGGTTCCAAAGTTCACGGATGGCACACATTTTGTGGCGTGGCAACAATGGTTCTGATCGATGAGGTCAACCGTTTGGATTTGCCGAGATTAATTGATTGGTTGGTGTTTCAACAAGGGAAGGAACATGGATTTAGCGGGAGGACTAATAAACTGGTTGATTGCTGCTACTCCAGGCAGGGAGGAACTTTTGCATTACTACAAAAAATCATGTTCGGTTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004311 GO:0004659 GO:0004660 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005965 GO:0006464 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0008270 GO:0008318 GO:0009414 GO:0009415 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009787 GO:0009788 GO:0009934 GO:0009966 GO:0009968 GO:0009987 GO:0010033 GO:0010035 GO:0010118 GO:0010646 GO:0010648 GO:0016740 GO:0016765 GO:0018342 GO:0018343 GO:0019538 GO:0022603 GO:0023051 GO:0023057 GO:0032991 GO:0033993 GO:0036211 GO:0042221 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0048509 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0065007 GO:0071704 GO:0097305 GO:0097354 GO:0140096 GO:1901419 GO:1901420 GO:1901564 GO:1901700 GO:1902494 GO:1905957 GO:1905958 GO:1990069 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00900 ko01130 map00900 map01130

Pfam Domains

Protein Families

Prenyltrans

Protein Analysis

138

Amino Acids

15.57

Weight (kDa)

6.94

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Prenyltrans	PF00432	49 - 131	3.3e-25	Prenyltransferase alpha-alpha toroid domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0028639)

Species	Orthologous Gene IDs
malus_domestica	MD08G1151200.v1.1
pyrus_communis	pycom08g12730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccII	CGCG	1 cut(s)	185
AciI	CCGC	3 cut(s)	183, 185, 327
AcyI	GRCGYC	1 cut(s)	113
AgsI	TTSAA	1 cut(s)	302
AjnI	CCWGG	3 cut(s)	72, 190, 362
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
Ama87I	CYCGRG	1 cut(s)	116
ApeKI	GCWGC	1 cut(s)	354
AseI	ATTAAT	1 cut(s)	281
AvaI	CYCGRG	1 cut(s)	116
BbvI	GCAGC	1 cut(s)	341
BccI	CCATC	1 cut(s)	204
BciT130I	CCWGG	3 cut(s)	74, 192, 364
BfaI	CTAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	2 cut(s)	183, 355
BlsI	GCNGC	2 cut(s)	184, 356
Bme1390I	CCNGG	3 cut(s)	74, 192, 364
BmeT110I	CYCGRG	1 cut(s)	116
BmiI	GGNNCC	2 cut(s)	189, 196
BmrFI	CCNGG	3 cut(s)	74, 192, 364
BpmI	CTGGAG	1 cut(s)	346
Bsa29I	ATCGAT	1 cut(s)	249
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	2 cut(s)	72, 183
Bse1I	ACTGG	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	74, 192, 364
BseCI	ATCGAT	1 cut(s)	249
BseDI	CCNNGG	2 cut(s)	72, 183
BseGI	GGATG	1 cut(s)	215
BseMI	GCAATG	1 cut(s)	177
BseNI	ACTGG	1 cut(s)	348
BseXI	GCAGC	1 cut(s)	341
Bsh1236I	CGCG	1 cut(s)	185
BshVI	ATCGAT	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	116
BsoBI	CYCGRG	1 cut(s)	116
Bsp143I	GATC	1 cut(s)	246
BspACI	CCGC	3 cut(s)	183, 185, 327
BspDI	ATCGAT	1 cut(s)	249
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	2 cut(s)	189, 196
BspMI	ACCTGC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	177
BsrI	ACTGG	1 cut(s)	348
BssECI	CCNNGG	2 cut(s)	72, 183
BssMI	GATC	1 cut(s)	246
BssNI	GRCGYC	1 cut(s)	113
Bst2UI	CCWGG	3 cut(s)	74, 192, 364
Bst4CI	ACNGT	2 cut(s)	19, 263
BstACI	GRCGYC	1 cut(s)	113
BstC8I	GCNNGC	1 cut(s)	123
BstDSI	CCRYGG	1 cut(s)	183
BstF5I	GGATG	1 cut(s)	215
BstFNI	CGCG	1 cut(s)	185
BstKTI	GATC	1 cut(s)	249
BstMBI	GATC	1 cut(s)	246
BstNI	CCWGG	3 cut(s)	74, 192, 364
BstSCI	CCNGG	3 cut(s)	72, 190, 362
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	341
Bsu15I	ATCGAT	1 cut(s)	249
BsuTUI	ATCGAT	1 cut(s)	249
BtgI	CCRYGG	1 cut(s)	183
BtsCI	GGATG	1 cut(s)	215
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	123
Cfr42I	CCGCGG	1 cut(s)	186
ClaI	ATCGAT	1 cut(s)	249
CseI	GACGC	1 cut(s)	121
CsiI	ACCWGGT	1 cut(s)	190
CviAII	CATG	2 cut(s)	317, 400
CviJI	RGCY	2 cut(s)	46, 121
CviKI_1	RGCY	2 cut(s)	46, 121
DpnI	GATC	1 cut(s)	248
DpnII	GATC	1 cut(s)	246
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	3 cut(s)	72, 190, 362
FaeI	CATG	2 cut(s)	320, 403
FaiI	YATR	4 cut(s)	30, 62, 318, 401
FatI	CATG	2 cut(s)	316, 399
FauI	CCCGC	1 cut(s)	320
Fnu4HI	GCNGC	2 cut(s)	183, 355
FokI	GGATG	1 cut(s)	222
Fsp4HI	GCNGC	2 cut(s)	183, 355
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	2 cut(s)	183, 355
GsuI	CTGGAG	1 cut(s)	346
HgaI	GACGC	1 cut(s)	121
Hin1I	GRCGYC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	320, 403
HincII	GTYRAC	1 cut(s)	259
HindII	GTYRAC	1 cut(s)	259
Hpy166II	GTNNAC	2 cut(s)	205, 259
Hpy188I	TCNGA	2 cut(s)	162, 246
Hpy8I	GTNNAC	2 cut(s)	205, 259
HpyAV	CCTTC	3 cut(s)	67, 164, 304
HpyCH4III	ACNGT	2 cut(s)	19, 263
HpyCH4V	TGCA	3 cut(s)	9, 133, 383
Hsp92I	GRCGYC	1 cut(s)	113
Hsp92II	CATG	2 cut(s)	320, 403
KspI	CCGCGG	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	246
LpnPI	CCDG	9 cut(s)	59, 86, 96, 177, 204, 329, 349, 353, 376
Lsp1109I	GCAGC	1 cut(s)	341
MabI	ACCWGGT	1 cut(s)	190
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	1 cut(s)	407
MalI	GATC	1 cut(s)	248
MboI	GATC	1 cut(s)	246
MboII	GAAGA	1 cut(s)	45
MluCI	AATT	3 cut(s)	107, 134, 282
MnlI	CCTC	3 cut(s)	247, 324, 365
MseI	TTAA	1 cut(s)	281
MspA1I	CMGCKG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	74, 192, 364
MvaI	CCWGG	3 cut(s)	74, 192, 364
MvnI	CGCG	1 cut(s)	185
NdeII	GATC	1 cut(s)	246
NlaIII	CATG	2 cut(s)	320, 403
NlaIV	GGNNCC	2 cut(s)	189, 196
NmeAIII	GCCGAG	1 cut(s)	300
PkrI	GCNGC	2 cut(s)	184, 356
PshBI	ATTAAT	1 cut(s)	281
Psp6I	CCWGG	3 cut(s)	72, 190, 362
PspGI	CCWGG	3 cut(s)	72, 190, 362
PspN4I	GGNNCC	2 cut(s)	189, 196
SacII	CCGCGG	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	281
SatI	GCNGC	2 cut(s)	183, 355
Sau3AI	GATC	1 cut(s)	246
ScrFI	CCNGG	3 cut(s)	74, 192, 364
SetI	ASST	5 cut(s)	85, 123, 175, 193, 258
SexAI	ACCWGGT	1 cut(s)	190
Sfr303I	CCGCGG	1 cut(s)	186
SgrBI	CCGCGG	1 cut(s)	186
Sse9I	AATT	3 cut(s)	107, 134, 282
SsiI	CCGC	3 cut(s)	183, 185, 327
SspI	AATATT	1 cut(s)	40
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	72, 190, 362
TaaI	ACNGT	2 cut(s)	19, 263
TaqI	TCGA	1 cut(s)	249
TasI	AATT	3 cut(s)	107, 134, 282
TauI	GCSGC	1 cut(s)	185
Tru1I	TTAA	1 cut(s)	281
Tru9I	TTAA	1 cut(s)	281
TseI	GCWGC	1 cut(s)	354
TspDTI	ATGAA	2 cut(s)	49, 137
TspGWI	ACGGA	1 cut(s)	222
VspI	ATTAAT	1 cut(s)	281
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.