Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0028643

Physical Location & Seq

Genomic Coordinates Reverse (-)

17458081 .. 17459587

Gene Structure 1507 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1156900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGATGCTGACTTTGACAAAACCCGATTCACCTAGTGATTCTCTGAGGGATATTCAAGATATATCTTTGAACTTGAAACTCTCACTGGATGGCGACAAAACTGAAGGGAGTGCTGCTCTTGATAATGCTTTAGAGGCTGAAGACCATGCTGCTGGAGGGAAGACTAAGGAGCAGAATGCGGTTTTGACATTGTCAAAAGGCGTTTGTCAAAAGCCTGGTTCCACAGAGAAAGCAGACAACAGTTCTGAGGCTGGTAAATTTCTGGCATTCAGGAAAAGGAAGTATGTTTGTGTAATTGCTGTGGATTGTGATACAACCTCAGAGTTCACTGAGATCATTGAGAAGGTTACTGAGGCAGTGGGGAAGGACAGAGATGCAGGACCTATTGGATTTATATTATCAACAGCGTTGGGCATATCTGAGATCCATTCTCTTTTGATTTCAGGAGGTTTGAGTCCTTCACAGTTTGATGCTTTTATCTGTAACAGTGGTGGTGAGCTCTACTATCCATCTTCAAGCTCTGAGGATAGTCCTTCTGGGCTTCCCTTTGTGGTGGACATAGATTATTGTTCACACATTGAATACCACTGGGGAGCAGAAGGTTTGAGAAAGACATTGGTTCGTTGGGTCGCTAATTTCAACGAAAAGAAAGGAAGGGAAACTGTTACAGAAGATGTATCAGCATCAACTAACCATTGCTATGCGTATAAAGTGAAAGATCCAGAACTGCTTCCCCCTGTTAAGGAACTCCGGAAACTCATGAGAATTCAGGCTCTCCGTTGCCATGTTATATATTCCCTAAATGGCACCAGGCTGAATGTTATCCCTGTGTTGGCTTCTAGATCACAAGCACTCAGGTACCTGTATGTCCGTTGGGGCTTGAACTTGTCAACTGCTGTTGTTTTCGTGGGAGAAAGTGGTGACACGGATTATGAAGGTTCGCTTGGTGGGCTACACAAAACTGTGATACTGAAGGGAGTTGGCATTGGCGCTCGTAAGCTTCATGCCAACCGAAACTATCCTTTAGAACATGTCTTTCCAAACGACAGTCCCAATATGGCTCAAACTGAAGGATGCTCCGAAAATGACATAAGAGCGTCATTGGTGAAACTAGGGATTCTTAAGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

377

Amino Acids

40.99

Weight (kDa)

6.03

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
S6PP	PF05116	125 - 308	7.5e-12	Sucrose-6F-phosphate phosphohydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028643)

Species	Orthologous Gene IDs
malus_domestica	MD08G1156900.v1.1
rosa_multiflora	Rmu_ssc0000319.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	858
AccB1I	GGYRCC	2 cut(s)	806, 858
AccIII	TCCGGA	1 cut(s)	750
AciI	CCGC	2 cut(s)	179, 1126
AclWI	GGATC	2 cut(s)	418, 713
AcsI	RAATTY	2 cut(s)	257, 765
AcuI	CTGAAG	4 cut(s)	123, 159, 992, 1089
AdeI	CACNNNGTG	1 cut(s)	35
AfaI	GTAC	1 cut(s)	860
AfiI	CCNNNNNNNGG	2 cut(s)	742, 832
AflII	CTTAAG	1 cut(s)	1121
AflIII	ACRYGT	1 cut(s)	1030
AgsI	TTSAA	7 cut(s)	56, 70, 76, 516, 581, 640, 883
AjnI	CCWGG	2 cut(s)	214, 809
AjuI	GAANNNNNNNTTGG	2 cut(s)	927, 959
AluBI	AGCT	3 cut(s)	499, 519, 1000
AluI	AGCT	3 cut(s)	499, 519, 1000
Alw21I	GWGCWC	1 cut(s)	501
AlwI	GGATC	2 cut(s)	418, 713
Aor13HI	TCCGGA	1 cut(s)	750
ApeKI	GCWGC	2 cut(s)	113, 149
ApoI	RAATTY	2 cut(s)	257, 765
Asp700I	GAANNNNTTC	1 cut(s)	729
Asp718I	GGTACC	1 cut(s)	858
AspLEI	GCGC	1 cut(s)	992
AspS9I	GGNCC	1 cut(s)	380
AsuHPI	GGTGA	4 cut(s)	21, 506, 932, 1117
AvaII	GGWCC	1 cut(s)	380
BaeI	ACNNNNGTAYC	2 cut(s)	842, 875
BanI	GGYRCC	2 cut(s)	806, 858
BanII	GRGCYC	1 cut(s)	501
BbsI	GAAGAC	2 cut(s)	147, 167
Bbv12I	GWGCWC	1 cut(s)	501
BbvI	GCAGC	2 cut(s)	100, 136
BccI	CCATC	2 cut(s)	83, 517
BciT130I	CCWGG	2 cut(s)	216, 811
BfaI	CTAG	3 cut(s)	33, 840, 1112
BfoI	RGCGCY	1 cut(s)	993
BfrI	CTTAAG	1 cut(s)	1121
BisI	GCNGC	2 cut(s)	114, 150
BlsI	GCNGC	2 cut(s)	115, 151
Bme1390I	CCNGG	2 cut(s)	216, 811
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	1 cut(s)	380
BmiI	GGNNCC	3 cut(s)	220, 808, 860
BmrFI	CCNGG	2 cut(s)	216, 811
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	4 cut(s)	364, 460, 692, 1064
BmuI	ACTGGG	1 cut(s)	598
BpiI	GAAGAC	2 cut(s)	147, 167
BplI	GAGNNNNNCTC	2 cut(s)	100, 132
BpmI	CTGGAG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	750
Bsc4I	CCNNNNNNNGG	2 cut(s)	742, 832
Bse1I	ACTGG	2 cut(s)	90, 593
Bse3DI	GCAATG	1 cut(s)	694
BseAI	TCCGGA	1 cut(s)	750
BseBI	CCWGG	2 cut(s)	216, 811
BseGI	GGATG	2 cut(s)	94, 1079
BseLI	CCNNNNNNNGG	2 cut(s)	742, 832
BseMI	GCAATG	1 cut(s)	694
BseMII	CTCAG	8 cut(s)	35, 237, 321, 333, 342, 411, 513, 868
BseNI	ACTGG	2 cut(s)	90, 593
BseXI	GCAGC	2 cut(s)	100, 136
BshNI	GGYRCC	2 cut(s)	806, 858
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	1 cut(s)	751
BslFI	GGGAC	1 cut(s)	1035
BslI	CCNNNNNNNGG	2 cut(s)	742, 832
BsmFI	GGGAC	1 cut(s)	1035
BsmI	GAATGC	2 cut(s)	181, 266
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp13I	TCCGGA	1 cut(s)	750
Bsp143I	GATC	4 cut(s)	333, 423, 718, 842
BspACI	CCGC	2 cut(s)	179, 1126
BspCNI	CTCAG	8 cut(s)	36, 238, 322, 332, 343, 412, 514, 867
BspEI	TCCGGA	1 cut(s)	750
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	3 cut(s)	220, 808, 860
BspPI	GGATC	2 cut(s)	418, 713
BspT107I	GGYRCC	2 cut(s)	806, 858
BspTI	CTTAAG	1 cut(s)	1121
BsrDI	GCAATG	1 cut(s)	694
BsrI	ACTGG	2 cut(s)	90, 593
BssMI	GATC	4 cut(s)	333, 423, 718, 842
Bst2UI	CCWGG	2 cut(s)	216, 811
Bst4CI	ACNGT	6 cut(s)	242, 465, 488, 664, 964, 1049
BstAFI	CTTAAG	1 cut(s)	1121
BstDEI	CTNAG	9 cut(s)	44, 165, 246, 319, 330, 351, 420, 522, 854
BstF5I	GGATG	2 cut(s)	94, 1079
BstH2I	RGCGCY	1 cut(s)	993
BstHHI	GCGC	1 cut(s)	992
BstKTI	GATC	4 cut(s)	336, 426, 721, 845
BstMBI	GATC	4 cut(s)	333, 423, 718, 842
BstMWI	GCNNNNNNNGC	2 cut(s)	134, 949
BstNI	CCWGG	2 cut(s)	216, 811
BstNSI	RCATGY	1 cut(s)	1034
BstSCI	CCNGG	2 cut(s)	214, 809
BstV1I	GCAGC	2 cut(s)	100, 136
BstV2I	GAAGAC	2 cut(s)	147, 167
BstX2I	RGATCY	2 cut(s)	423, 718
BstXI	CCANNNNNNTGG	1 cut(s)	152
BstYI	RGATCY	2 cut(s)	423, 718
BtsCI	GGATG	2 cut(s)	94, 1079
BtsI	GCAGTG	1 cut(s)	363
BtsIMutI	CAGTG	5 cut(s)	83, 327, 363, 493, 586
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	1 cut(s)	992
Cfr13I	GGNCC	1 cut(s)	380
CseI	GACGC	1 cut(s)	1086
Csp6I	GTAC	1 cut(s)	859
CviAII	CATG	5 cut(s)	146, 760, 785, 1004, 1031
CviQI	GTAC	1 cut(s)	859
DdeI	CTNAG	9 cut(s)	44, 165, 246, 319, 330, 351, 420, 522, 854
DpnI	GATC	4 cut(s)	335, 425, 720, 844
DpnII	GATC	4 cut(s)	333, 423, 718, 842
DraIII	CACNNNGTG	1 cut(s)	35
Ecl136II	GAGCTC	1 cut(s)	499
Eco24I	GRGCYC	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	380
Eco53kI	GAGCTC	1 cut(s)	499
Eco57I	CTGAAG	4 cut(s)	123, 159, 992, 1089
EcoICRI	GAGCTC	1 cut(s)	499
EcoO109I	RGGNCCY	1 cut(s)	380
EcoRI	GAATTC	1 cut(s)	765
EcoRII	CCWGG	2 cut(s)	214, 809
EcoT38I	GRGCYC	1 cut(s)	501
FaeI	CATG	5 cut(s)	149, 763, 788, 1007, 1034
FalI	AAGNNNNNCTT	2 cut(s)	927, 959
FaqI	GGGAC	1 cut(s)	1035
FatI	CATG	5 cut(s)	145, 759, 784, 1003, 1030
Fnu4HI	GCNGC	2 cut(s)	114, 150
FokI	GGATG	2 cut(s)	101, 1086
FriOI	GRGCYC	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	114, 150
FspBI	CTAG	3 cut(s)	33, 840, 1112
GlaI	GCGC	1 cut(s)	991
GluI	GCNGC	2 cut(s)	114, 150
GsuI	CTGGAG	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	993
HapII	CCGG	1 cut(s)	751
HgaI	GACGC	1 cut(s)	1086
HhaI	GCGC	1 cut(s)	992
Hin1II	CATG	5 cut(s)	149, 763, 788, 1007, 1034
Hin6I	GCGC	1 cut(s)	990
HinP1I	GCGC	1 cut(s)	990
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	998
HinfI	GANTC	4 cut(s)	26, 38, 454, 1117
HpaII	CCGG	1 cut(s)	751
HphI	GGTGA	4 cut(s)	21, 506, 932, 1117
Hpy166II	GTNNAC	4 cut(s)	327, 556, 572, 891
Hpy188I	TCNGA	6 cut(s)	45, 247, 322, 421, 523, 1081
Hpy188III	TCNNGA	8 cut(s)	56, 119, 271, 444, 722, 751, 760, 840
Hpy8I	GTNNAC	4 cut(s)	327, 556, 572, 891
HpyCH4III	ACNGT	6 cut(s)	242, 465, 488, 664, 964, 1049
HpyCH4V	TGCA	1 cut(s)	377
HpyF10VI	GCNNNNNNNGC	2 cut(s)	134, 949
HpyF3I	CTNAG	9 cut(s)	44, 165, 246, 319, 330, 351, 420, 522, 854
Hsp92II	CATG	5 cut(s)	149, 763, 788, 1007, 1034
HspAI	GCGC	1 cut(s)	990
Kpn2I	TCCGGA	1 cut(s)	750
KpnI	GGTACC	1 cut(s)	862
Kzo9I	GATC	4 cut(s)	333, 423, 718, 842
LmnI	GCTCC	3 cut(s)	169, 593, 1082
Lsp1109I	GCAGC	2 cut(s)	100, 136
LweI	GCATC	4 cut(s)	364, 460, 692, 1064
MaeI	CTAG	3 cut(s)	33, 840, 1112
MaeIII	GTNAC	4 cut(s)	346, 482, 664, 920
MalI	GATC	4 cut(s)	335, 425, 720, 844
MboI	GATC	4 cut(s)	333, 423, 718, 842
MboII	GAAGA	4 cut(s)	152, 172, 504, 683
MflI	RGATCY	2 cut(s)	423, 718
MhlI	GDGCHC	1 cut(s)	501
MluCI	AATT	4 cut(s)	257, 294, 634, 765
MlyI	GAGTC	1 cut(s)	463
MnlI	CCTC	8 cut(s)	39, 127, 149, 241, 328, 346, 440, 517
MroI	TCCGGA	1 cut(s)	750
MroXI	GAANNNNTTC	1 cut(s)	729
MseI	TTAA	2 cut(s)	741, 1122
MslI	CAYNNNNRTG	1 cut(s)	699
MspCI	CTTAAG	1 cut(s)	1121
MspI	CCGG	1 cut(s)	751
MspR9I	CCNGG	2 cut(s)	216, 811
Mva1269I	GAATGC	2 cut(s)	181, 266
MvaI	CCWGG	2 cut(s)	216, 811
MwoI	GCNNNNNNNGC	2 cut(s)	134, 949
NdeII	GATC	4 cut(s)	333, 423, 718, 842
NlaIII	CATG	5 cut(s)	149, 763, 788, 1007, 1034
NlaIV	GGNNCC	3 cut(s)	220, 808, 860
NmuCI	GTSAC	1 cut(s)	920
NspI	RCATGY	1 cut(s)	1034
PagI	TCATGA	1 cut(s)	759
PciI	ACATGT	1 cut(s)	1030
PctI	GAATGC	2 cut(s)	181, 266
PdmI	GAANNNNTTC	1 cut(s)	729
PfeI	GAWTC	3 cut(s)	26, 38, 1117
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	115, 151
PleI	GAGTC	1 cut(s)	462
PpsI	GAGTC	1 cut(s)	462
PpuMI	RGGWCCY	1 cut(s)	380
PscI	ACATGT	1 cut(s)	1030
Psp124BI	GAGCTC	1 cut(s)	501
Psp5II	RGGWCCY	1 cut(s)	380
Psp6I	CCWGG	2 cut(s)	214, 809
PspGI	CCWGG	2 cut(s)	214, 809
PspN4I	GGNNCC	3 cut(s)	220, 808, 860
PspPI	GGNCC	1 cut(s)	380
PspPPI	RGGWCCY	1 cut(s)	380
PsuI	RGATCY	2 cut(s)	423, 718
PsyI	GACNNNGTC	1 cut(s)	190
RsaI	GTAC	1 cut(s)	860
RsaNI	GTAC	1 cut(s)	859
RseI	CAYNNNNRTG	1 cut(s)	699
SacI	GAGCTC	1 cut(s)	501
SaqAI	TTAA	2 cut(s)	741, 1122
SatI	GCNGC	2 cut(s)	114, 150
Sau3AI	GATC	4 cut(s)	333, 423, 718, 842
Sau96I	GGNCC	1 cut(s)	380
SchI	GAGTC	1 cut(s)	463
ScrFI	CCNGG	2 cut(s)	216, 811
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	4 cut(s)	364, 460, 692, 1064
SinI	GGWCC	1 cut(s)	380
SmiMI	CAYNNNNRTG	1 cut(s)	699
SmlI	CTYRAG	1 cut(s)	1121
SmoI	CTYRAG	1 cut(s)	1121
Sse9I	AATT	4 cut(s)	257, 294, 634, 765
SsiI	CCGC	2 cut(s)	179, 1126
SspMI	CTAG	3 cut(s)	33, 840, 1112
SstI	GAGCTC	1 cut(s)	501
StyD4I	CCNGG	2 cut(s)	214, 809
TaaI	ACNGT	6 cut(s)	242, 465, 488, 664, 964, 1049
TasI	AATT	4 cut(s)	257, 294, 634, 765
TfiI	GAWTC	3 cut(s)	26, 38, 1117
Tru1I	TTAA	2 cut(s)	741, 1122
Tru9I	TTAA	2 cut(s)	741, 1122
TscAI	CASTG	5 cut(s)	90, 334, 363, 493, 593
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	2 cut(s)	113, 149
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	2 cut(s)	948, 992
TspGWI	ACGGA	3 cut(s)	767, 860, 941
TspRI	CASTG	5 cut(s)	90, 334, 363, 493, 593
Tth111I	GACNNNGTC	1 cut(s)	190
Vha464I	CTTAAG	1 cut(s)	1121
VpaK11BI	GGWCC	1 cut(s)	380
XapI	RAATTY	2 cut(s)	257, 765
XbaI	TCTAGA	1 cut(s)	839
XceI	RCATGY	1 cut(s)	1034
XmnI	GAANNNNTTC	1 cut(s)	729
XspI	CTAG	3 cut(s)	33, 840, 1112

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.