Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000319.1

Orthogroup ID

OG0028643

Physical Location & Seq

Genomic Coordinates Forward (+)

32504 .. 34503

Gene Structure 2000 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000319.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ctgctagttgacccccatgatcagcagtcaattgctgatgcccttctgaacctcgtttcggataagcatctttgggcaagatgcaggcagaatggactgaaaaacattcaccttttctcatggccagagcattgtaagacctacttatctcgcataaccagttgcaaaccaaggcagccacaatggcgaagaactgccgctgaaattgattcttcaggatcagattcacctggtgattccttaagagatatacaagatatatctttgaacttgaagctctctttggatggtgagaaaattgaaggggctggatctcttgataatgctttagataatgatgcagctgaaggaaaagtaaaagaagagaatgcggttttgacaatgtcaaagggtgttctagagggctgtcaaaaggctggtgccacagagaaagaagagaacactggggctggtaaatttcctgcactgaggaaaaggaagcatgtatttgtaattgctgtggattgtgatacaacctcagagttcagtgaaattgttgaaaaggttattgagacagtatcaaaggaaaaggatgcaggacctataggattcatactgtcaacagcctatcccatatcagagatacagtctcttttggtctcagggggtttgagcccatcacagtttgatggttttatatgcagcagtggtggtgagctctattatccagcttcaagctctgaggatagtccttctgggcttccctttgtggtagacttggattatcgttcacacactgaatatcgttggggtggagacggtttgagaaagactttggttcgttgggtcgcttctttcaatgagaaaaaaggagacggacaagttgcagcagatgaatcaggaacaactaagcattgctatgcgtttattgtgaaggatccagcagtgattccccctgttaaggaactccggaaaatgatgagaattcaggctcttcgatgcaatgttgtatattctcagaatggtacgaggctgaaggtcatccctgtgttggcttctagatcacaagccctcaggtatctgtatgtccgttggggattggacttgtcaaacattgttacctttgtgggagaactaggtgacacagattacgaaggcttgcttggtggtgtacacaagactgttatattgaagggagtaggtaccagtgctcgtaagcttcatgctaaccggaactttcctttggaacatgtccttccagtcgacaatcccaatgttgttcaaagtgaaggatgctctgataaagacattcgagcatcactggtgaaactaaggattctcaaggggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0007275 GO:0008150 GO:0008194 GO:0009555 GO:0009653 GO:0009987 GO:0010208 GO:0010927 GO:0016020 GO:0016043 GO:0016740 GO:0016757 GO:0016758 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0035251 GO:0043062 GO:0044085 GO:0044464 GO:0045229 GO:0046524 GO:0046527 GO:0046903 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051179 GO:0051234 GO:0071836 GO:0071840 GO:0071944 GO:0085029

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

Glycos_transf_1 S6PP Sucrose_synth

Protein Analysis

442

Amino Acids

48.46

Weight (kDa)

6.61

Isoelectric Point (pI)

46.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028643)

Species	Orthologous Gene IDs
malus_domestica	MD08G1156900.v1.1
rosa_multiflora	Rmu_ssc0000319.1_g000007

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1181
AccB1I	GGYRCC	2 cut(s)	419, 1181
AccI	GTMKAC	2 cut(s)	753, 1242
AccIII	TCCGGA	1 cut(s)	948
AciI	CCGC	2 cut(s)	198, 371
AclWI	GGATC	4 cut(s)	226, 319, 911, 924
AcoI	YGGCCR	1 cut(s)	122
AcsI	RAATTY	2 cut(s)	455, 963
AcuI	CTGAAG	3 cut(s)	198, 366, 1034
AdeI	CACNNNGTG	1 cut(s)	233
AfaI	GTAC	3 cut(s)	1006, 1152, 1183
AfiI	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
AflII	CTTAAG	1 cut(s)	241
AflIII	ACRYGT	1 cut(s)	1228
AgsI	TTSAA	8 cut(s)	268, 274, 302, 539, 714, 838, 1171, 1262
AjnI	CCWGG	1 cut(s)	229
AjuI	GAANNNNNNNTTGG	6 cut(s)	266, 298, 1125, 1157, 1205, 1237
AluBI	AGCT	6 cut(s)	277, 344, 697, 710, 717, 1198
AluI	AGCT	6 cut(s)	277, 344, 697, 710, 717, 1198
Alw21I	GWGCWC	2 cut(s)	699, 1192
Alw26I	GTCTC	5 cut(s)	545, 633, 643, 789, 846
AlwI	GGATC	4 cut(s)	226, 319, 911, 924
Aor13HI	TCCGGA	1 cut(s)	948
AoxI	GGCC	1 cut(s)	122
ApeKI	GCWGC	4 cut(s)	175, 341, 681, 866
ApoI	RAATTY	2 cut(s)	455, 963
Asp718I	GGTACC	1 cut(s)	1181
AspS9I	GGNCC	1 cut(s)	578
AsuHPI	GGTGA	7 cut(s)	101, 219, 245, 302, 704, 1130, 1315
AvaII	GGWCC	1 cut(s)	578
AxyI	CCTNAGG	1 cut(s)	1052
BalI	TGGCCA	1 cut(s)	124
BamHI	GGATCC	1 cut(s)	916
BanI	GGYRCC	2 cut(s)	419, 1181
BanII	GRGCYC	2 cut(s)	656, 699
Bbv12I	GWGCWC	2 cut(s)	699, 1192
BbvI	GCAGC	4 cut(s)	187, 353, 693, 878
BccI	CCATC	3 cut(s)	281, 662, 664
BciT130I	CCWGG	1 cut(s)	231
BclI	TGATCA	1 cut(s)	19
BcoDI	GTCTC	5 cut(s)	545, 633, 643, 789, 846
BfaI	CTAG	4 cut(s)	5, 398, 1038, 1115
BfmI	CTRYAG	1 cut(s)	582
BfrI	CTTAAG	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	184
BisI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
BlsI	GCNGC	5 cut(s)	177, 199, 343, 683, 868
Bme1390I	CCNGG	1 cut(s)	231
Bme18I	GGWCC	1 cut(s)	578
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	3 cut(s)	421, 918, 1183
BmrFI	CCNGG	1 cut(s)	231
BmrI	ACTGGG	1 cut(s)	453
BmsI	GCATC	8 cut(s)	28, 71, 76, 328, 562, 968, 1262, 1304
BmuI	ACTGGG	1 cut(s)	453
BpuEI	CTTGAG	1 cut(s)	1304
BsaBI	GATNNNNATC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	643
BsaJI	CCNNGG	1 cut(s)	170
BsaWI	WCCGGW	2 cut(s)	948, 1209
Bsc4I	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
Bse1I	ACTGG	5 cut(s)	159, 448, 1185, 1238, 1305
Bse21I	CCTNAGG	1 cut(s)	1052
Bse3DI	GCAATG	2 cut(s)	892, 988
Bse8I	GATNNNNATC	1 cut(s)	66
BseAI	TCCGGA	1 cut(s)	948
BseBI	CCWGG	1 cut(s)	231
BseDI	CCNNGG	1 cut(s)	170
BseGI	GGATG	4 cut(s)	292, 577, 1020, 1277
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
BseMI	GCAATG	2 cut(s)	892, 988
BseMII	CTCAG	6 cut(s)	458, 531, 654, 711, 1010, 1066
BseNI	ACTGG	5 cut(s)	159, 448, 1185, 1238, 1305
BseXI	GCAGC	4 cut(s)	187, 353, 693, 878
BsgI	GTGCAG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	124
BshNI	GGYRCC	2 cut(s)	419, 1181
BsiHKAI	GWGCWC	2 cut(s)	699, 1192
BsiSI	CCGG	2 cut(s)	949, 1210
BslI	CCNNNNNNNGG	3 cut(s)	58, 940, 1030
BsmAI	GTCTC	5 cut(s)	545, 633, 643, 789, 846
BsmBI	CGTCTC	2 cut(s)	789, 846
BsmI	GAATGC	1 cut(s)	373
BsnI	GGCC	1 cut(s)	124
Bso31I	GGTCTC	1 cut(s)	643
Bsp1286I	GDGCHC	3 cut(s)	656, 699, 1192
Bsp13I	TCCGGA	1 cut(s)	948
Bsp1407I	TGTACA	1 cut(s)	1150
Bsp143I	GATC	5 cut(s)	19, 218, 311, 916, 1040
BspACI	CCGC	2 cut(s)	198, 371
BspANI	GGCC	1 cut(s)	124
BspCNI	CTCAG	6 cut(s)	459, 530, 653, 712, 1009, 1065
BspEI	TCCGGA	1 cut(s)	948
BspLI	GGNNCC	3 cut(s)	421, 918, 1183
BspPI	GGATC	4 cut(s)	226, 319, 911, 924
BspQI	GCTCTTC	1 cut(s)	978
BspT107I	GGYRCC	2 cut(s)	419, 1181
BspTI	CTTAAG	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	643
BsrDI	GCAATG	2 cut(s)	892, 988
BsrGI	TGTACA	1 cut(s)	1150
BsrI	ACTGG	5 cut(s)	159, 448, 1185, 1238, 1305
BssECI	CCNNGG	1 cut(s)	170
BssMI	GATC	5 cut(s)	19, 218, 311, 916, 1040
BssT1I	CCWWGG	1 cut(s)	170
Bst2UI	CCWGG	1 cut(s)	231
Bst4CI	ACNGT	6 cut(s)	556, 597, 627, 663, 800, 1162
Bst6I	CTCTTC	3 cut(s)	357, 429, 978
BstAFI	CTTAAG	1 cut(s)	241
BstAUI	TGTACA	1 cut(s)	1150
BstC8I	GCNNGC	2 cut(s)	86, 1139
BstDEI	CTNAG	8 cut(s)	467, 517, 640, 720, 888, 996, 1052, 1310
BstF5I	GGATG	4 cut(s)	292, 577, 1020, 1277
BstKTI	GATC	5 cut(s)	22, 221, 314, 919, 1043
BstMAI	GTCTC	5 cut(s)	545, 633, 643, 789, 846
BstMBI	GATC	5 cut(s)	19, 218, 311, 916, 1040
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstNI	CCWGG	1 cut(s)	231
BstNSI	RCATGY	2 cut(s)	485, 1232
BstSCI	CCNGG	1 cut(s)	229
BstSFI	CTRYAG	1 cut(s)	582
BstV1I	GCAGC	4 cut(s)	187, 353, 693, 878
BstX2I	RGATCY	2 cut(s)	311, 916
BstYI	RGATCY	2 cut(s)	311, 916
Bsu36I	CCTNAGG	1 cut(s)	1052
BsuRI	GGCC	1 cut(s)	124
BtsCI	GGATG	4 cut(s)	292, 577, 1020, 1277
BtsI	GCAGTG	2 cut(s)	691, 930
BtsIMutI	CAGTG	8 cut(s)	441, 464, 532, 691, 774, 930, 1192, 1298
Cac8I	GCNNGC	2 cut(s)	86, 1139
Cfr13I	GGNCC	1 cut(s)	578
CsiI	ACCWGGT	1 cut(s)	229
Csp6I	GTAC	3 cut(s)	1005, 1151, 1182
CviAII	CATG	5 cut(s)	17, 120, 482, 1202, 1229
CviQI	GTAC	3 cut(s)	1005, 1151, 1182
DdeI	CTNAG	8 cut(s)	467, 517, 640, 720, 888, 996, 1052, 1310
DpnI	GATC	5 cut(s)	21, 220, 313, 918, 1042
DpnII	GATC	5 cut(s)	19, 218, 311, 916, 1040
DraIII	CACNNNGTG	1 cut(s)	233
EaeI	YGGCCR	1 cut(s)	122
Eam1104I	CTCTTC	3 cut(s)	357, 429, 978
EarI	CTCTTC	3 cut(s)	357, 429, 978
Ecl136II	GAGCTC	1 cut(s)	697
Eco130I	CCWWGG	1 cut(s)	170
Eco24I	GRGCYC	2 cut(s)	656, 699
Eco31I	GGTCTC	1 cut(s)	643
Eco47I	GGWCC	1 cut(s)	578
Eco53kI	GAGCTC	1 cut(s)	697
Eco57I	CTGAAG	3 cut(s)	198, 366, 1034
Eco81I	CCTNAGG	1 cut(s)	1052
EcoICRI	GAGCTC	1 cut(s)	697
EcoO109I	RGGNCCY	1 cut(s)	578
EcoRI	GAATTC	1 cut(s)	963
EcoRII	CCWGG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	170
EcoT38I	GRGCYC	2 cut(s)	656, 699
ErhI	CCWWGG	1 cut(s)	170
Esp3I	CGTCTC	2 cut(s)	789, 846
FaeI	CATG	5 cut(s)	20, 123, 485, 1205, 1232
FalI	AAGNNNNNCTT	4 cut(s)	128, 160, 1125, 1157
FatI	CATG	5 cut(s)	16, 119, 481, 1201, 1228
FbaI	TGATCA	1 cut(s)	19
FblI	GTMKAC	2 cut(s)	753, 1242
Fnu4HI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
FokI	GGATG	4 cut(s)	299, 584, 1007, 1284
FriOI	GRGCYC	2 cut(s)	656, 699
Fsp4HI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
FspBI	CTAG	4 cut(s)	5, 398, 1038, 1115
GluI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
HaeIII	GGCC	1 cut(s)	124
HapII	CCGG	2 cut(s)	949, 1210
Hin1II	CATG	5 cut(s)	20, 123, 485, 1205, 1232
HincII	GTYRAC	3 cut(s)	10, 600, 1243
HindII	GTYRAC	3 cut(s)	10, 600, 1243
HindIII	AAGCTT	1 cut(s)	1196
HinfI	GANTC	7 cut(s)	209, 224, 236, 588, 875, 928, 1315
HpaII	CCGG	2 cut(s)	949, 1210
HphI	GGTGA	7 cut(s)	101, 219, 245, 302, 704, 1130, 1315
Hpy166II	GTNNAC	7 cut(s)	10, 600, 754, 770, 1151, 1153, 1243
Hpy188I	TCNGA	8 cut(s)	48, 61, 223, 520, 619, 721, 999, 1279
Hpy188III	TCNNGA	6 cut(s)	216, 317, 398, 879, 949, 1038
Hpy8I	GTNNAC	7 cut(s)	10, 600, 754, 770, 1151, 1153, 1243
HpyCH4III	ACNGT	6 cut(s)	556, 597, 627, 663, 800, 1162
HpyCH4V	TGCA	8 cut(s)	84, 165, 341, 464, 575, 681, 866, 981
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	8 cut(s)	467, 517, 640, 720, 888, 996, 1052, 1310
Hsp92II	CATG	5 cut(s)	20, 123, 485, 1205, 1232
Kpn2I	TCCGGA	1 cut(s)	948
KpnI	GGTACC	1 cut(s)	1185
Ksp22I	TGATCA	1 cut(s)	19
Kzo9I	GATC	5 cut(s)	19, 218, 311, 916, 1040
LguI	GCTCTTC	1 cut(s)	978
Lsp1109I	GCAGC	4 cut(s)	187, 353, 693, 878
LweI	GCATC	8 cut(s)	28, 71, 76, 328, 562, 968, 1262, 1304
MabI	ACCWGGT	1 cut(s)	229
MaeI	CTAG	4 cut(s)	5, 398, 1038, 1115
MaeIII	GTNAC	2 cut(s)	1096, 1118
MalI	GATC	5 cut(s)	21, 220, 313, 918, 1042
MboI	GATC	5 cut(s)	19, 218, 311, 916, 1040
MboII	GAAGA	5 cut(s)	201, 204, 374, 446, 965
MfeI	CAATTG	1 cut(s)	30
MflI	RGATCY	2 cut(s)	311, 916
MhlI	GDGCHC	3 cut(s)	656, 699, 1192
MlsI	TGGCCA	1 cut(s)	124
MluCI	AATT	7 cut(s)	30, 204, 297, 455, 492, 531, 963
MluNI	TGGCCA	1 cut(s)	124
MnlI	CCTC	7 cut(s)	62, 394, 462, 526, 715, 1002, 1061
Mox20I	TGGCCA	1 cut(s)	124
MroI	TCCGGA	1 cut(s)	948
MscI	TGGCCA	1 cut(s)	124
MseI	TTAA	2 cut(s)	242, 939
MslI	CAYNNNNRTG	2 cut(s)	897, 1025
Msp20I	TGGCCA	1 cut(s)	124
MspA1I	CMGCKG	2 cut(s)	200, 344
MspCI	CTTAAG	1 cut(s)	241
MspI	CCGG	2 cut(s)	949, 1210
MspR9I	CCNGG	1 cut(s)	231
MunI	CAATTG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	373
MvaI	CCWGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	5 cut(s)	19, 218, 311, 916, 1040
NlaIII	CATG	5 cut(s)	20, 123, 485, 1205, 1232
NlaIV	GGNNCC	3 cut(s)	421, 918, 1183
NmuCI	GTSAC	1 cut(s)	1118
NspI	RCATGY	2 cut(s)	485, 1232
PciI	ACATGT	1 cut(s)	1228
PciSI	GCTCTTC	1 cut(s)	978
PctI	GAATGC	1 cut(s)	373
PfeI	GAWTC	7 cut(s)	209, 224, 236, 588, 875, 928, 1315
PflFI	GACNNNGTC	1 cut(s)	382
PkrI	GCNGC	5 cut(s)	177, 199, 343, 683, 868
PpuMI	RGGWCCY	1 cut(s)	578
PscI	ACATGT	1 cut(s)	1228
Psp124BI	GAGCTC	1 cut(s)	699
Psp5II	RGGWCCY	1 cut(s)	578
Psp6I	CCWGG	1 cut(s)	229
PspGI	CCWGG	1 cut(s)	229
PspN4I	GGNNCC	3 cut(s)	421, 918, 1183
PspPI	GGNCC	1 cut(s)	578
PspPPI	RGGWCCY	1 cut(s)	578
PsuI	RGATCY	2 cut(s)	311, 916
PsyI	GACNNNGTC	1 cut(s)	382
PvuII	CAGCTG	1 cut(s)	344
RsaI	GTAC	3 cut(s)	1006, 1152, 1183
RsaNI	GTAC	3 cut(s)	1005, 1151, 1182
RseI	CAYNNNNRTG	2 cut(s)	897, 1025
SacI	GAGCTC	1 cut(s)	699
SalI	GTCGAC	1 cut(s)	1241
SapI	GCTCTTC	1 cut(s)	978
SaqAI	TTAA	2 cut(s)	242, 939
SatI	GCNGC	5 cut(s)	176, 198, 342, 682, 867
Sau3AI	GATC	5 cut(s)	19, 218, 311, 916, 1040
Sau96I	GGNCC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	231
SduI	GDGCHC	3 cut(s)	656, 699, 1192
SexAI	ACCWGGT	1 cut(s)	229
SfaNI	GCATC	8 cut(s)	28, 71, 76, 328, 562, 968, 1262, 1304
SfcI	CTRYAG	1 cut(s)	582
SinI	GGWCC	1 cut(s)	578
SmiMI	CAYNNNNRTG	2 cut(s)	897, 1025
SmlI	CTYRAG	2 cut(s)	241, 1319
SmoI	CTYRAG	2 cut(s)	241, 1319
Sse9I	AATT	7 cut(s)	30, 204, 297, 455, 492, 531, 963
SsiI	CCGC	2 cut(s)	198, 371
SspMI	CTAG	4 cut(s)	5, 398, 1038, 1115
SstI	GAGCTC	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	229
StyI	CCWWGG	1 cut(s)	170
TaaI	ACNGT	6 cut(s)	556, 597, 627, 663, 800, 1162
TaqI	TCGA	3 cut(s)	976, 1242, 1291
TasI	AATT	7 cut(s)	30, 204, 297, 455, 492, 531, 963
TatI	WGTACW	1 cut(s)	1150
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	7 cut(s)	209, 224, 236, 588, 875, 928, 1315
Tru1I	TTAA	2 cut(s)	242, 939
Tru9I	TTAA	2 cut(s)	242, 939
TscAI	CASTG	8 cut(s)	448, 471, 532, 691, 781, 930, 1192, 1305
TseFI	GTSAC	1 cut(s)	1118
TseI	GCWGC	4 cut(s)	175, 341, 681, 866
Tsp45I	GTSAC	1 cut(s)	1118
TspDTI	ATGAA	3 cut(s)	580, 888, 1190
TspGWI	ACGGA	2 cut(s)	870, 1058
TspRI	CASTG	8 cut(s)	448, 471, 532, 691, 781, 930, 1192, 1305
Tth111I	GACNNNGTC	1 cut(s)	382
Vha464I	CTTAAG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	578
XapI	RAATTY	2 cut(s)	455, 963
XbaI	TCTAGA	2 cut(s)	397, 1037
XceI	RCATGY	2 cut(s)	485, 1232
XmiI	GTMKAC	2 cut(s)	753, 1242
XspI	CTAG	4 cut(s)	5, 398, 1038, 1115

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.