Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0028448

Physical Location & Seq

Genomic Coordinates Reverse (-)

3780484 .. 3781026

Gene Structure 543 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1057300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGACTAGTTGTTTCCCTAAAACAATCTCATGTAGGTGCCTAAAGTTAAAACGACTGGTTCTTCCAAGTTGCTTCACAATAAGCGACACTGGAATATACGAGGCCTTTCGCTGCTGGAAAGACCTCGTGTCGCTGACAATATCTCCCGATAATACAAATTTCCCGTACCTGTTGGAGCAGATTTCCAGCAACTGTAAAAACTTCAGTGAACTTAAACTTATGGGTACTTGTGATCGTGGCTTTGCTTCAACCCTAGTTGCATATCTTCCGAAACTGAAGGTTTTAAGCCTCCGGTGCACTAAGTTCACGAGTAGCGATTTACACATTATATTGAATGACCTAAAACAGCTACAAGTTCTCAATATTTCACATTGCTTCTGGGTACAAATTAATTGGATAATTCTTGACAAGGCTTCTCGGTTGCAGAGTTTTATAACATGCATGCAATTCGATCGTTGTATCGTTTGCCGAGTTTGTCACCAAAGGGACAAGGAGGACAGGTGGCATGAAGATGAGGTGGACTCCCTTGCTTTGAATAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box-like

Protein Analysis

181

Amino Acids

20.91

Weight (kDa)

8.57

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028448)

Species	Orthologous Gene IDs
malus_domestica	MD09G1057300.v1.1
pyrus_communis	pycom111g04770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	434
AccB1I	GGYRCC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	2 cut(s)	187, 296
AfaI	GTAC	3 cut(s)	167, 226, 384
AgsI	TTSAA	3 cut(s)	249, 334, 535
AhdI	GACNNNNNGTC	1 cut(s)	127
AhlI	ACTAGT	1 cut(s)	5
AluBI	AGCT	1 cut(s)	349
AluI	AGCT	1 cut(s)	349
Alw21I	GWGCWC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	295
AlwNI	CAGNNNCTG	1 cut(s)	192
AoxI	GGCC	1 cut(s)	102
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	157
AseI	ATTAAT	1 cut(s)	390
AsuHPI	GGTGA	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	36
BauI	CACGAG	2 cut(s)	125, 307
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	1 cut(s)	98
BcgI	CGANNNNNNTGC	4 cut(s)	430, 434, 464, 468
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	2 cut(s)	6, 254
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	38
BplI	GAGNNNNNCTC	2 cut(s)	506, 538
BsaWI	WCCGGW	1 cut(s)	291
BsaXI	ACNNNNNCTCC	4 cut(s)	127, 157, 485, 515
Bse1I	ACTGG	2 cut(s)	60, 94
Bse3DI	GCAATG	1 cut(s)	370
BseMI	GCAATG	1 cut(s)	370
BseNI	ACTGG	2 cut(s)	60, 94
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	98
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	1 cut(s)	104
BshNI	GGYRCC	1 cut(s)	36
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	1 cut(s)	292
BslFI	GGGAC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	500
BsnI	GGCC	1 cut(s)	104
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	232, 451
BspANI	GGCC	1 cut(s)	104
BspLI	GGNNCC	1 cut(s)	38
BspT107I	GGYRCC	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	2 cut(s)	60, 94
BssMI	GATC	2 cut(s)	232, 451
BssSI	CACGAG	2 cut(s)	125, 307
Bst2BI	CACGAG	2 cut(s)	125, 307
Bst4CI	ACNGT	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	443
BstDEI	CTNAG	1 cut(s)	300
BstKTI	GATC	2 cut(s)	235, 454
BstMBI	GATC	2 cut(s)	232, 451
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	1 cut(s)	294
BstNSI	RCATGY	2 cut(s)	441, 445
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	98
BsuRI	GGCC	1 cut(s)	104
BtsIMutI	CAGTG	2 cut(s)	87, 211
Cac8I	GCNNGC	1 cut(s)	443
CaiI	CAGNNNCTG	1 cut(s)	192
Csp6I	GTAC	3 cut(s)	166, 225, 383
CviAII	CATG	4 cut(s)	30, 438, 442, 506
CviJI	RGCY	5 cut(s)	104, 240, 288, 349, 413
CviKI_1	RGCY	5 cut(s)	104, 240, 288, 349, 413
CviQI	GTAC	3 cut(s)	166, 225, 383
DdeI	CTNAG	1 cut(s)	300
DpnI	GATC	2 cut(s)	234, 453
DpnII	GATC	2 cut(s)	232, 451
DriI	GACNNNNNGTC	1 cut(s)	127
Eam1105I	GACNNNNNGTC	1 cut(s)	127
Eco147I	AGGCCT	1 cut(s)	104
Eco57I	CTGAAG	2 cut(s)	187, 296
EcoT22I	ATGCAT	1 cut(s)	443
FaeI	CATG	4 cut(s)	33, 441, 445, 509
FaiI	YATR	9 cut(s)	31, 97, 221, 262, 329, 434, 439, 443, 507
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	4 cut(s)	29, 437, 441, 505
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	2 cut(s)	6, 254
GluI	GCNGC	1 cut(s)	112
HaeIII	GGCC	1 cut(s)	104
HapII	CCGG	1 cut(s)	292
Hin1II	CATG	4 cut(s)	33, 441, 445, 509
HinfI	GANTC	1 cut(s)	521
HpaII	CCGG	1 cut(s)	292
HphI	GGTGA	1 cut(s)	470
Hpy166II	GTNNAC	4 cut(s)	209, 297, 306, 520
Hpy188I	TCNGA	1 cut(s)	270
Hpy188III	TCNNGA	3 cut(s)	146, 307, 404
Hpy8I	GTNNAC	4 cut(s)	209, 297, 306, 520
HpyAV	CCTTC	1 cut(s)	271
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4V	TGCA	5 cut(s)	260, 297, 424, 441, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	294
HpyF3I	CTNAG	1 cut(s)	300
Hsp92II	CATG	4 cut(s)	33, 441, 445, 509
Kzo9I	GATC	2 cut(s)	232, 451
LmnI	GCTCC	1 cut(s)	175
LpnPI	CCDG	8 cut(s)	41, 75, 100, 182, 199, 305, 364, 484
Lsp1109I	GCAGC	1 cut(s)	98
MaeI	CTAG	2 cut(s)	6, 254
MaeIII	GTNAC	1 cut(s)	476
MalI	GATC	2 cut(s)	234, 453
MboI	GATC	2 cut(s)	232, 451
MboII	GAAGA	3 cut(s)	53, 257, 521
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	5 cut(s)	157, 387, 391, 399, 446
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	153
MnlI	CCTC	5 cut(s)	94, 134, 299, 487, 508
Mph1103I	ATGCAT	1 cut(s)	443
MseI	TTAA	4 cut(s)	47, 213, 284, 390
MslI	CAYNNNNRTG	2 cut(s)	34, 510
MspI	CCGG	1 cut(s)	292
MwoI	GCNNNNNNNGC	1 cut(s)	294
NdeII	GATC	2 cut(s)	232, 451
NlaIII	CATG	4 cut(s)	33, 441, 445, 509
NlaIV	GGNNCC	1 cut(s)	38
NmeAIII	GCCGAG	1 cut(s)	494
NmuCI	GTSAC	1 cut(s)	476
NsiI	ATGCAT	1 cut(s)	443
NspI	RCATGY	2 cut(s)	441, 445
PaeI	GCATGC	1 cut(s)	445
PceI	AGGCCT	1 cut(s)	104
PkrI	GCNGC	1 cut(s)	113
Ple19I	CGATCG	1 cut(s)	454
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PshBI	ATTAAT	1 cut(s)	390
PsiI	TTATAA	1 cut(s)	434
PspN4I	GGNNCC	1 cut(s)	38
PstNI	CAGNNNCTG	1 cut(s)	192
PvuI	CGATCG	1 cut(s)	454
RsaI	GTAC	3 cut(s)	167, 226, 384
RsaNI	GTAC	3 cut(s)	166, 225, 383
RseI	CAYNNNNRTG	2 cut(s)	34, 510
SaqAI	TTAA	4 cut(s)	47, 213, 284, 390
SatI	GCNGC	1 cut(s)	112
Sau3AI	GATC	2 cut(s)	232, 451
SchI	GAGTC	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	8 cut(s)	38, 126, 171, 282, 342, 351, 503, 519
SmiMI	CAYNNNNRTG	2 cut(s)	34, 510
SpeI	ACTAGT	1 cut(s)	5
SphI	GCATGC	1 cut(s)	445
Sse9I	AATT	5 cut(s)	157, 387, 391, 399, 446
SseBI	AGGCCT	1 cut(s)	104
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	2 cut(s)	6, 254
StuI	AGGCCT	1 cut(s)	104
TaaI	ACNGT	1 cut(s)	194
TaqI	TCGA	1 cut(s)	450
TasI	AATT	5 cut(s)	157, 387, 391, 399, 446
Tru1I	TTAA	4 cut(s)	47, 213, 284, 390
Tru9I	TTAA	4 cut(s)	47, 213, 284, 390
TscAI	CASTG	2 cut(s)	94, 211
TseFI	GTSAC	1 cut(s)	476
TseI	GCWGC	1 cut(s)	111
Tsp45I	GTSAC	1 cut(s)	476
TspDTI	ATGAA	1 cut(s)	522
TspRI	CASTG	2 cut(s)	94, 211
VneI	GTGCAC	1 cut(s)	295
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	2 cut(s)	441, 445
XspI	CTAG	2 cut(s)	6, 254
Zsp2I	ATGCAT	1 cut(s)	443

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.