Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0028448

Physical Location & Seq

Genomic Coordinates Reverse (-)

2887963 .. 2890773

Gene Structure 2811 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g04770.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGACTAATTGTTTTCCTGAACCAATCTCATGTAGATGCCTAAAGTTAAAACGACTGGTTCTTCCAAGTTGCTTCGCAATAAGCGACACTGGAATATACGAGTCCTTTCGCTGCTGGAAAGACCTCGTGTCGCTGACAATATCTCCCGACAATACAAATTTCCGGTACCTGTTGGAGCAGATTTCCAGCAACTGTAAAAACTTCAGTGAACTTAAACTTATGGGTACTTGTCATCATGGCTTTGCTTTAACCCTAGTTGCATATCTTCCGAAACTGAAGGTTTTAAGCCTCCGGTGCACAAAGTTCACGAGTAGCGATTTACACACTGTATTGGATGACCTAAAACAGCTACAAGTTCTCAACATTTCACATTGCTTCTGGATAAAAATTAATTGGATAATTCTTGACAAGGCTTCTCGGTTGCAGACTGAAGCTCTGAGAGAACCAAAAACCCAGTTGATATATTTCCGGAGAATTCAAACATATTTAGATAGTAAAAGAAAAATGGCTTTTTCTGGTGATTTTGGAATCTCTGCAATTTTTGGAACTTGCCCTTTTAAGCACCACCACTCTCTGGGAATCTCTCTCCAACCCTCCAAGGTAAAATGTAACGGATTCAATGGCGGAGGCAGTTCGCTTGTGATGAATCAAACGTCTTTCTCAAATCTAGTTTGCTATAGCTCGAACTCAAAGTGTCACTATGACCAATCATTTGGAATTGAAGGAAACAGTGAACTCCTTCCAGGACCTATAAACCAAGAAACAGAAGGCTTTCTCCTCAATGCTATAAACATGAGCTTTTTCGAGCGCTTGAATTTGGCATGGAAGATATTGCTCCCTTCACCATCGACACGAAGGACTTCCAATGCAAAGATTGCAAAGCAGCGGTTGCAGATGATCCTCTTCTCTGATCGATCGATGCACAGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006996 GO:0008150 GO:0009507 GO:0009536 GO:0009657 GO:0009658 GO:0009987 GO:0010020 GO:0016043 GO:0019899 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043572 GO:0044424 GO:0044444 GO:0044464 GO:0048285 GO:0051117 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MinE

Protein Analysis

311

Amino Acids

35.22

Weight (kDa)

9.28

Isoelectric Point (pI)

50.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028448)

Species	Orthologous Gene IDs
malus_domestica	MD09G1057300.v1.1
pyrus_communis	pycom111g04770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	165
AccB1I	GGYRCC	1 cut(s)	165
AccB7I	CCANNNNNTGG	1 cut(s)	574
AccIII	TCCGGA	1 cut(s)	468
AciI	CCGC	2 cut(s)	624, 886
AclWI	GGATC	1 cut(s)	892
AcsI	RAATTY	3 cut(s)	157, 474, 814
AcuI	CTGAAG	3 cut(s)	187, 296, 450
AfaI	GTAC	2 cut(s)	167, 226
AfeI	AGCGCT	1 cut(s)	809
AfiI	CCNNNNNNNGG	1 cut(s)	574
AgsI	TTSAA	4 cut(s)	479, 619, 722, 814
AhdI	GACNNNNNGTC	1 cut(s)	127
AjnI	CCWGG	1 cut(s)	742
AluBI	AGCT	4 cut(s)	349, 434, 681, 798
AluI	AGCT	4 cut(s)	349, 434, 681, 798
Alw21I	GWGCWC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	295
AlwI	GGATC	1 cut(s)	892
AlwNI	CAGNNNCTG	2 cut(s)	192, 930
Aor13HI	TCCGGA	1 cut(s)	468
Aor51HI	AGCGCT	1 cut(s)	809
ApaLI	GTGCAC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	111, 883
ApoI	RAATTY	3 cut(s)	157, 474, 814
ArsI	GACNNNNNNTTYG	2 cut(s)	695, 727
AseI	ATTAAT	1 cut(s)	390
Asp700I	GAANNNNTTC	3 cut(s)	738, 771, 859
Asp718I	GGTACC	1 cut(s)	165
AspLEI	GCGC	1 cut(s)	810
AspS9I	GGNCC	1 cut(s)	746
AsuHPI	GGTGA	2 cut(s)	530, 834
AvaII	GGWCC	1 cut(s)	746
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	165
BauI	CACGAG	2 cut(s)	125, 307
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	98, 895
BccI	CCATC	1 cut(s)	853
BciT130I	CCWGG	1 cut(s)	744
BfaI	CTAG	2 cut(s)	254, 668
BfmI	CTRYAG	1 cut(s)	676
BfoI	RGCGCY	1 cut(s)	811
BisI	GCNGC	2 cut(s)	112, 884
BlsI	GCNGC	2 cut(s)	113, 885
Bme1390I	CCNGG	1 cut(s)	744
Bme18I	GGWCC	1 cut(s)	746
BmeRI	GACNNNNNGTC	1 cut(s)	127
BmgT120I	GGNCC	1 cut(s)	746
BmiI	GGNNCC	1 cut(s)	167
BmrFI	CCNGG	1 cut(s)	744
BmrI	ACTGGG	1 cut(s)	448
BmsI	GCATC	2 cut(s)	26, 909
BmuI	ACTGGG	1 cut(s)	448
Bsa29I	ATCGAT	2 cut(s)	913, 917
BsaJI	CCNNGG	1 cut(s)	597
BsaWI	WCCGGW	3 cut(s)	162, 291, 468
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	60, 94, 454
Bse3DI	GCAATG	1 cut(s)	370
BseAI	TCCGGA	1 cut(s)	468
BseBI	CCWGG	1 cut(s)	744
BseCI	ATCGAT	2 cut(s)	913, 917
BseDI	CCNNGG	1 cut(s)	597
BseGI	GGATG	1 cut(s)	340
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseMI	GCAATG	1 cut(s)	370
BseMII	CTCAG	1 cut(s)	428
BseNI	ACTGG	3 cut(s)	60, 94, 454
BseRI	GAGGAG	1 cut(s)	767
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	2 cut(s)	98, 895
Bsh1285I	CGRYCG	1 cut(s)	917
BshNI	GGYRCC	1 cut(s)	165
BshVI	ATCGAT	2 cut(s)	913, 917
BsiEI	CGRYCG	1 cut(s)	917
BsiHKAI	GWGCWC	1 cut(s)	299
BsiSI	CCGG	3 cut(s)	163, 292, 469
BslI	CCNNNNNNNGG	1 cut(s)	574
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp13I	TCCGGA	1 cut(s)	468
Bsp143I	GATC	3 cut(s)	897, 910, 914
BspACI	CCGC	2 cut(s)	624, 886
BspCNI	CTCAG	1 cut(s)	429
BspDI	ATCGAT	2 cut(s)	913, 917
BspEI	TCCGGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	892
BspT107I	GGYRCC	1 cut(s)	165
BsrDI	GCAATG	1 cut(s)	370
BsrI	ACTGG	3 cut(s)	60, 94, 454
BssECI	CCNNGG	1 cut(s)	597
BssMI	GATC	3 cut(s)	897, 910, 914
BssSI	CACGAG	2 cut(s)	125, 307
BssT1I	CCWWGG	1 cut(s)	597
Bst2BI	CACGAG	2 cut(s)	125, 307
Bst2UI	CCWGG	1 cut(s)	744
Bst4CI	ACNGT	4 cut(s)	194, 328, 731, 926
Bst6I	CTCTTC	1 cut(s)	908
BstAPI	GCANNNNNTGC	2 cut(s)	875, 889
BstDEI	CTNAG	1 cut(s)	437
BstF5I	GGATG	1 cut(s)	340
BstH2I	RGCGCY	1 cut(s)	811
BstHHI	GCGC	1 cut(s)	810
BstKTI	GATC	3 cut(s)	900, 913, 917
BstMBI	GATC	3 cut(s)	897, 910, 914
BstMCI	CGRYCG	1 cut(s)	917
BstMWI	GCNNNNNNNGC	3 cut(s)	294, 875, 889
BstNI	CCWGG	1 cut(s)	744
BstSCI	CCNGG	1 cut(s)	742
BstSFI	CTRYAG	1 cut(s)	676
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	98, 895
BstXI	CCANNNNNNTGG	1 cut(s)	713
Bsu15I	ATCGAT	2 cut(s)	913, 917
BsuTUI	ATCGAT	2 cut(s)	913, 917
BtsCI	GGATG	1 cut(s)	340
BtsIMutI	CAGTG	4 cut(s)	87, 211, 324, 736
CaiI	CAGNNNCTG	2 cut(s)	192, 930
CfoI	GCGC	1 cut(s)	810
Cfr13I	GGNCC	1 cut(s)	746
ClaI	ATCGAT	2 cut(s)	913, 917
Csp6I	GTAC	2 cut(s)	166, 225
CviAII	CATG	4 cut(s)	30, 236, 793, 822
CviJI	RGCY	9 cut(s)	240, 288, 349, 413, 434, 509, 681, 771, 798
CviKI_1	RGCY	9 cut(s)	240, 288, 349, 413, 434, 509, 681, 771, 798
CviQI	GTAC	2 cut(s)	166, 225
DdeI	CTNAG	1 cut(s)	437
DpnI	GATC	3 cut(s)	899, 912, 916
DpnII	GATC	3 cut(s)	897, 910, 914
DriI	GACNNNNNGTC	1 cut(s)	127
Eam1104I	CTCTTC	1 cut(s)	908
Eam1105I	GACNNNNNGTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	908
EciI	GGCGGA	1 cut(s)	639
Eco130I	CCWWGG	1 cut(s)	597
Eco47I	GGWCC	1 cut(s)	746
Eco47III	AGCGCT	1 cut(s)	809
Eco57I	CTGAAG	3 cut(s)	187, 296, 450
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRI	GAATTC	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	742
EcoT14I	CCWWGG	1 cut(s)	597
ErhI	CCWWGG	1 cut(s)	597
FaeI	CATG	4 cut(s)	33, 239, 796, 825
FatI	CATG	4 cut(s)	29, 235, 792, 821
Fnu4HI	GCNGC	2 cut(s)	112, 884
FokI	GGATG	1 cut(s)	347
Fsp4HI	GCNGC	2 cut(s)	112, 884
FspBI	CTAG	2 cut(s)	254, 668
GlaI	GCGC	1 cut(s)	809
GluI	GCNGC	2 cut(s)	112, 884
HaeII	RGCGCY	1 cut(s)	811
HapII	CCGG	3 cut(s)	163, 292, 469
HhaI	GCGC	1 cut(s)	810
Hin1II	CATG	4 cut(s)	33, 239, 796, 825
Hin6I	GCGC	1 cut(s)	808
HinP1I	GCGC	1 cut(s)	808
HinfI	GANTC	5 cut(s)	101, 528, 579, 615, 646
HpaII	CCGG	3 cut(s)	163, 292, 469
HphI	GGTGA	2 cut(s)	530, 834
Hpy166II	GTNNAC	4 cut(s)	209, 297, 306, 734
Hpy188I	TCNGA	3 cut(s)	270, 438, 910
Hpy188III	TCNNGA	6 cut(s)	17, 146, 307, 379, 404, 469
Hpy8I	GTNNAC	4 cut(s)	209, 297, 306, 734
HpyAV	CCTTC	6 cut(s)	271, 716, 749, 761, 849, 849
HpyCH4III	ACNGT	4 cut(s)	194, 328, 731, 926
HpyCH4IV	ACGT	1 cut(s)	653
HpyCH4V	TGCA	8 cut(s)	260, 297, 424, 536, 869, 878, 892, 922
HpyF10VI	GCNNNNNNNGC	3 cut(s)	294, 875, 889
HpyF3I	CTNAG	1 cut(s)	437
HpySE526I	ACGT	1 cut(s)	653
Hsp92II	CATG	4 cut(s)	33, 239, 796, 825
HspAI	GCGC	1 cut(s)	808
Kpn2I	TCCGGA	1 cut(s)	468
KpnI	GGTACC	1 cut(s)	169
Kzo9I	GATC	3 cut(s)	897, 910, 914
LmnI	GCTCC	2 cut(s)	175, 840
Lsp1109I	GCAGC	2 cut(s)	98, 895
LweI	GCATC	2 cut(s)	26, 909
MaeI	CTAG	2 cut(s)	254, 668
MaeII	ACGT	1 cut(s)	653
MaeIII	GTNAC	3 cut(s)	608, 695, 926
MalI	GATC	3 cut(s)	899, 912, 916
MboI	GATC	3 cut(s)	897, 910, 914
MboII	GAAGA	4 cut(s)	53, 257, 838, 895
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	9 cut(s)	7, 157, 387, 391, 399, 474, 537, 717, 814
MlyI	GAGTC	1 cut(s)	110
MmeI	TCCRAC	2 cut(s)	153, 613
MnlI	CCTC	6 cut(s)	134, 299, 604, 620, 788, 911
MroI	TCCGGA	1 cut(s)	468
MroXI	GAANNNNTTC	3 cut(s)	738, 771, 859
MseI	TTAA	6 cut(s)	47, 213, 248, 284, 390, 558
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	886
MspI	CCGG	3 cut(s)	163, 292, 469
MspR9I	CCNGG	1 cut(s)	744
MvaI	CCWGG	1 cut(s)	744
MwoI	GCNNNNNNNGC	3 cut(s)	294, 875, 889
NdeII	GATC	3 cut(s)	897, 910, 914
NlaIII	CATG	4 cut(s)	33, 239, 796, 825
NlaIV	GGNNCC	1 cut(s)	167
NmuCI	GTSAC	1 cut(s)	695
PcsI	WCGNNNNNNNCGW	1 cut(s)	81
PdmI	GAANNNNTTC	3 cut(s)	738, 771, 859
PfeI	GAWTC	4 cut(s)	528, 579, 615, 646
PflMI	CCANNNNNTGG	1 cut(s)	574
PfoI	TCCNGGA	1 cut(s)	742
PkrI	GCNGC	2 cut(s)	113, 885
Ple19I	CGATCG	1 cut(s)	917
PleI	GAGTC	1 cut(s)	109
PpsI	GAGTC	1 cut(s)	109
PpuMI	RGGWCCY	1 cut(s)	746
PshBI	ATTAAT	1 cut(s)	390
Psp5II	RGGWCCY	1 cut(s)	746
Psp6I	CCWGG	1 cut(s)	742
PspGI	CCWGG	1 cut(s)	742
PspN4I	GGNNCC	1 cut(s)	167
PspPI	GGNCC	1 cut(s)	746
PspPPI	RGGWCCY	1 cut(s)	746
PstNI	CAGNNNCTG	2 cut(s)	192, 930
PvuI	CGATCG	1 cut(s)	917
RsaI	GTAC	2 cut(s)	167, 226
RsaNI	GTAC	2 cut(s)	166, 225
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	6 cut(s)	47, 213, 248, 284, 390, 558
SatI	GCNGC	2 cut(s)	112, 884
Sau3AI	GATC	3 cut(s)	897, 910, 914
Sau96I	GGNCC	1 cut(s)	746
SchI	GAGTC	1 cut(s)	110
ScrFI	CCNGG	1 cut(s)	744
SduI	GDGCHC	1 cut(s)	299
SfaNI	GCATC	2 cut(s)	26, 909
SfcI	CTRYAG	1 cut(s)	676
SinI	GGWCC	1 cut(s)	746
SmiMI	CAYNNNNRTG	1 cut(s)	34
Sse9I	AATT	9 cut(s)	7, 157, 387, 391, 399, 474, 537, 717, 814
SsiI	CCGC	2 cut(s)	624, 886
SspMI	CTAG	2 cut(s)	254, 668
StyD4I	CCNGG	1 cut(s)	742
StyI	CCWWGG	1 cut(s)	597
TaaI	ACNGT	4 cut(s)	194, 328, 731, 926
TaiI	ACGT	1 cut(s)	656
TaqI	TCGA	5 cut(s)	683, 804, 848, 913, 917
TasI	AATT	9 cut(s)	7, 157, 387, 391, 399, 474, 537, 717, 814
TfiI	GAWTC	4 cut(s)	528, 579, 615, 646
Tru1I	TTAA	6 cut(s)	47, 213, 248, 284, 390, 558
Tru9I	TTAA	6 cut(s)	47, 213, 248, 284, 390, 558
TscAI	CASTG	4 cut(s)	94, 211, 331, 736
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	2 cut(s)	111, 883
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	1 cut(s)	659
TspGWI	ACGGA	1 cut(s)	627
TspRI	CASTG	4 cut(s)	94, 211, 331, 736
Van91I	CCANNNNNTGG	1 cut(s)	574
VneI	GTGCAC	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	746
VspI	ATTAAT	1 cut(s)	390
XapI	RAATTY	3 cut(s)	157, 474, 814
XmnI	GAANNNNTTC	3 cut(s)	738, 771, 859
XspI	CTAG	2 cut(s)	254, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.