MD09G1123300.v1.1

No apical meristem (NAM) protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0028435
Physical Location & Seq
Forward (+)
9506640 .. 9507724
1085 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1123300.v1.1.491

Sequence Viewer

Length: 834 bp
ATGAGGAACACTGATCACTCATTTGATATAATTGCTGCTTCCACAGTGACCGAGTCATGTACGGAGGCCGATCTCAATGAGCGAGGTGAATCGTTCAATCCGAATCCAGAAACGATCTTGATCAAGTATTTATTTAACAAGTTGGCCGGACGGGCAACGCCTGTGGAAGATGTGATCAGACACATTGACTCGCAAAAGGGCATGCCTCCAGATGCTAATCAAATTCCTCCAAGTCTTTTCTGTCATGGAGGAGAAAACCGATCAGCATATTTCTACATATGTGCCGAGGTAGTTCTTGGTGATGTTAAAACAGAAAGGCCAACTTCTAATGGGTACTGGAAGCTGCTTAGTAACGAACAAGTGCACATTCAAACGTCCAGTGACAGTGATGACGATGCTGTAACTGTCGTTCTTGTTGGTAATGTACGGACGTGGAGGTATTATGGAAGGGAACTTAGGAGGCCCATGAGAACAGCGTCTGAGACGTGCTTTAAAATTCGGGAATACTACCTGAATCCAGAGCTTGAGCCTACAACGCTGATTGTGACGGGAGTATATCTTGGATGTTTTTTCAAAAAATTGTGTGTTTGTGAATTCATAGATGAGGACTCAGAGTTGAGACTGAAACAGAAGTGCAAGGTAACCTCATTGGCTATAAGCGGAGGTGATCCGCTGTTTATCTTGCCGGGACATCTCCCTATCGGCCCTAGACTAATATGTGCACTGTTAGATGCTCCGAAGCCCCGAGTTGATCCTTTCGATACTTTGTTTGTCAGAGCACCTCCTCCCTCTCCTTCTTCTCCATGGAAGGAGGAGAGTGACGATGAATGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

278

Amino Acids

31.19

Weight (kDa)

5.09

Isoelectric Point (pI)

44.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 29 - 170 2.8e-08 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0028435)

Species Orthologous Gene IDs
malus_domestica MD09G1123300.v1.1 MD09G1123400.v1.1

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 660, 671
AclWI GGATC 2 cut(s) 662, 746
AcoI YGGCCR 1 cut(s) 144
AcsI RAATTY 3 cut(s) 222, 495, 593
AfaI GTAC 3 cut(s) 61, 335, 426
AgsI TTSAA 3 cut(s) 97, 371, 574
AjiI CACGTC 2 cut(s) 432, 486
AluBI AGCT 2 cut(s) 343, 523
AluI AGCT 2 cut(s) 343, 523
Alw21I GWGCWC 3 cut(s) 366, 724, 781
Alw26I GTCTC 2 cut(s) 476, 613
Alw44I GTGCAC 2 cut(s) 362, 720
AlwI GGATC 2 cut(s) 662, 746
AlwNI CAGNNNCTG 1 cut(s) 479
Ama87I CYCGRG 1 cut(s) 744
AoxI GGCC 5 cut(s) 66, 144, 317, 461, 703
ApaLI GTGCAC 2 cut(s) 362, 720
ApeKI GCWGC 2 cut(s) 35, 343
ApoI RAATTY 3 cut(s) 222, 495, 593
AspS9I GGNCC 2 cut(s) 462, 704
AsuC2I CCSGG 1 cut(s) 687
AsuHPI GGTGA 3 cut(s) 98, 311, 677
AvaI CYCGRG 1 cut(s) 744
BaeGI GKGCMC 2 cut(s) 366, 724
Bbv12I GWGCWC 3 cut(s) 366, 724, 781
BbvI GCAGC 2 cut(s) 22, 330
BclI TGATCA 3 cut(s) 13, 120, 174
BcnI CCSGG 1 cut(s) 687
BcoDI GTCTC 2 cut(s) 476, 613
BfaI CTAG 1 cut(s) 708
BglI GCCNNNNNGGC 1 cut(s) 152
BisI GCNGC 2 cut(s) 36, 344
BlsI GCNGC 2 cut(s) 37, 345
Bme1390I CCNGG 1 cut(s) 687
BmeT110I CYCGRG 1 cut(s) 744
BmgBI CACGTC 2 cut(s) 432, 486
BmgT120I GGNCC 2 cut(s) 462, 704
BmrFI CCNGG 1 cut(s) 687
BmsI GCATC 3 cut(s) 202, 385, 721
BpmI CTGGAG 1 cut(s) 192
BpuEI CTTGAG 1 cut(s) 545
BpuMI CCSGG 1 cut(s) 687
BsaBI GATNNNNATC 2 cut(s) 119, 216
BsaJI CCNNGG 2 cut(s) 285, 803
Bse1I ACTGG 2 cut(s) 341, 378
Bse8I GATNNNNATC 2 cut(s) 119, 216
BseDI CCNNGG 2 cut(s) 285, 803
BseGI GGATG 1 cut(s) 569
BseJI GATNNNNATC 2 cut(s) 119, 216
BseMII CTCAG 2 cut(s) 471, 624
BseNI ACTGG 2 cut(s) 341, 378
BseRI GAGGAG 3 cut(s) 264, 774, 827
BseSI GKGCMC 2 cut(s) 366, 724
BseXI GCAGC 2 cut(s) 22, 330
BshFI GGCC 5 cut(s) 68, 146, 319, 463, 705
BsiHKAI GWGCWC 3 cut(s) 366, 724, 781
BsiHKCI CYCGRG 1 cut(s) 744
BsiSI CCGG 2 cut(s) 147, 686
BslFI GGGAC 1 cut(s) 702
BsmAI GTCTC 2 cut(s) 476, 613
BsmBI CGTCTC 1 cut(s) 476
BsmFI GGGAC 1 cut(s) 702
BsnI GGCC 5 cut(s) 68, 146, 319, 463, 705
BsoBI CYCGRG 1 cut(s) 744
Bsp1286I GDGCHC 3 cut(s) 366, 724, 781
Bsp143I GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
Bsp19I CCATGG 1 cut(s) 803
BspACI CCGC 2 cut(s) 660, 671
BspANI GGCC 5 cut(s) 68, 146, 319, 463, 705
BspCNI CTCAG 2 cut(s) 472, 623
BspPI GGATC 2 cut(s) 662, 746
BsrI ACTGG 2 cut(s) 341, 378
BssECI CCNNGG 2 cut(s) 285, 803
BssMI GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
BssT1I CCWWGG 1 cut(s) 803
Bst4CI ACNGT 4 cut(s) 46, 386, 406, 726
BstC8I GCNNGC 1 cut(s) 203
BstDEI CTNAG 4 cut(s) 347, 455, 480, 610
BstDSI CCRYGG 1 cut(s) 803
BstEII GGTNACC 1 cut(s) 640
BstF5I GGATG 1 cut(s) 569
BstKTI GATC 8 cut(s) 16, 73, 117, 123, 177, 263, 670, 754
BstMAI GTCTC 2 cut(s) 476, 613
BstMBI GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
BstMWI GCNNNNNNNGC 2 cut(s) 152, 535
BstNSI RCATGY 1 cut(s) 205
BstPI GGTNACC 1 cut(s) 640
BstSCI CCNGG 1 cut(s) 685
BstSLI GKGCMC 2 cut(s) 366, 724
BstV1I GCAGC 2 cut(s) 22, 330
BsuRI GGCC 5 cut(s) 68, 146, 319, 463, 705
BtgI CCRYGG 1 cut(s) 803
BtrI CACGTC 2 cut(s) 432, 486
BtsCI GGATG 1 cut(s) 569
BtsIMutI CAGTG 5 cut(s) 9, 51, 385, 391, 722
Cac8I GCNNGC 1 cut(s) 203
CaiI CAGNNNCTG 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 462, 704
CseI GACGC 1 cut(s) 465
Csp6I GTAC 3 cut(s) 60, 334, 425
CspCI CAANNNNNGTGG 2 cut(s) 144, 179
CviAII CATG 5 cut(s) 57, 202, 245, 466, 804
CviQI GTAC 3 cut(s) 60, 334, 425
DdeI CTNAG 4 cut(s) 347, 455, 480, 610
DpnI GATC 8 cut(s) 15, 72, 116, 122, 176, 262, 669, 753
DpnII GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
DraI TTTAAA 1 cut(s) 493
EaeI YGGCCR 1 cut(s) 144
Eco130I CCWWGG 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 744
Eco91I GGTNACC 1 cut(s) 640
EcoO65I GGTNACC 1 cut(s) 640
EcoRI GAATTC 1 cut(s) 593
EcoT14I CCWWGG 1 cut(s) 803
ErhI CCWWGG 1 cut(s) 803
Esp3I CGTCTC 1 cut(s) 476
FaeI CATG 5 cut(s) 60, 205, 248, 469, 807
FalI AAGNNNNNCTT 2 cut(s) 307, 339
FaqI GGGAC 1 cut(s) 702
FatI CATG 5 cut(s) 56, 201, 244, 465, 803
FauNDI CATATG 1 cut(s) 278
FbaI TGATCA 3 cut(s) 13, 120, 174
Fnu4HI GCNGC 2 cut(s) 36, 344
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 2 cut(s) 36, 344
FspBI CTAG 1 cut(s) 708
GluI GCNGC 2 cut(s) 36, 344
GsuI CTGGAG 1 cut(s) 192
HaeIII GGCC 5 cut(s) 68, 146, 319, 463, 705
HapII CCGG 2 cut(s) 147, 686
HgaI GACGC 1 cut(s) 465
Hin1II CATG 5 cut(s) 60, 205, 248, 469, 807
HinfI GANTC 6 cut(s) 53, 89, 103, 188, 514, 608
HpaII CCGG 2 cut(s) 147, 686
HphI GGTGA 3 cut(s) 98, 311, 677
Hpy166II GTNNAC 2 cut(s) 364, 722
Hpy188I TCNGA 6 cut(s) 102, 179, 481, 613, 738, 776
Hpy188III TCNNGA 5 cut(s) 107, 118, 209, 500, 518
Hpy8I GTNNAC 2 cut(s) 364, 722
HpyAV CCTTC 3 cut(s) 441, 802, 804
HpyCH4III ACNGT 4 cut(s) 46, 386, 406, 726
HpyCH4IV ACGT 3 cut(s) 374, 431, 485
HpyCH4V TGCA 3 cut(s) 364, 636, 722
HpyF10VI GCNNNNNNNGC 2 cut(s) 152, 535
HpyF3I CTNAG 4 cut(s) 347, 455, 480, 610
HpySE526I ACGT 3 cut(s) 374, 431, 485
Hsp92II CATG 5 cut(s) 60, 205, 248, 469, 807
Ksp22I TGATCA 3 cut(s) 13, 120, 174
Kzo9I GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
LmnI GCTCC 1 cut(s) 739
LpnPI CCDG 9 cut(s) 120, 160, 174, 222, 322, 391, 524, 531, 699
Lsp1109I GCAGC 2 cut(s) 22, 330
LweI GCATC 3 cut(s) 202, 385, 721
MaeI CTAG 1 cut(s) 708
MaeII ACGT 3 cut(s) 374, 431, 485
MaeIII GTNAC 7 cut(s) 46, 350, 380, 400, 544, 640, 818
MalI GATC 8 cut(s) 15, 72, 116, 122, 176, 262, 669, 753
MboI GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
MboII GAAGA 2 cut(s) 179, 789
MhlI GDGCHC 3 cut(s) 366, 724, 781
MluCI AATT 5 cut(s) 30, 222, 495, 578, 593
MlyI GAGTC 3 cut(s) 62, 182, 602
MseI TTAA 3 cut(s) 135, 306, 492
MspA1I CMGCKG 1 cut(s) 673
MspI CCGG 2 cut(s) 147, 686
MspR9I CCNGG 1 cut(s) 687
MwoI GCNNNNNNNGC 2 cut(s) 152, 535
NciI CCSGG 1 cut(s) 687
NcoI CCATGG 1 cut(s) 803
NdeI CATATG 1 cut(s) 278
NdeII GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
NlaIII CATG 5 cut(s) 60, 205, 248, 469, 807
NmeAIII GCCGAG 1 cut(s) 310
NmuCI GTSAC 4 cut(s) 46, 380, 544, 818
NspI RCATGY 1 cut(s) 205
PaeI GCATGC 1 cut(s) 205
PcsI WCGNNNNNNNCGW 1 cut(s) 98
PfeI GAWTC 3 cut(s) 89, 103, 514
PflFI GACNNNGTC 1 cut(s) 52
PkrI GCNGC 2 cut(s) 37, 345
PleI GAGTC 3 cut(s) 61, 182, 602
PpsI GAGTC 3 cut(s) 61, 182, 602
PspEI GGTNACC 1 cut(s) 640
PspPI GGNCC 2 cut(s) 462, 704
PsrI GAACNNNNNNTAC 2 cut(s) 393, 425
PstNI CAGNNNCTG 1 cut(s) 479
PsyI GACNNNGTC 1 cut(s) 52
RsaI GTAC 3 cut(s) 61, 335, 426
RsaNI GTAC 3 cut(s) 60, 334, 425
SaqAI TTAA 3 cut(s) 135, 306, 492
SatI GCNGC 2 cut(s) 36, 344
Sau3AI GATC 8 cut(s) 13, 70, 114, 120, 174, 260, 667, 751
Sau96I GGNCC 2 cut(s) 462, 704
SchI GAGTC 3 cut(s) 62, 182, 602
ScrFI CCNGG 1 cut(s) 687
SduI GDGCHC 3 cut(s) 366, 724, 781
SfaNI GCATC 3 cut(s) 202, 385, 721
SmlI CTYRAG 1 cut(s) 524
SmoI CTYRAG 1 cut(s) 524
SphI GCATGC 1 cut(s) 205
Sse9I AATT 5 cut(s) 30, 222, 495, 578, 593
SsiI CCGC 2 cut(s) 660, 671
SspMI CTAG 1 cut(s) 708
StyD4I CCNGG 1 cut(s) 685
StyI CCWWGG 1 cut(s) 803
TaaI ACNGT 4 cut(s) 46, 386, 406, 726
TaiI ACGT 3 cut(s) 377, 434, 488
TaqI TCGA 1 cut(s) 759
TaqII GACCGA 1 cut(s) 65
TasI AATT 5 cut(s) 30, 222, 495, 578, 593
TfiI GAWTC 3 cut(s) 89, 103, 514
Tru1I TTAA 3 cut(s) 135, 306, 492
Tru9I TTAA 3 cut(s) 135, 306, 492
TscAI CASTG 5 cut(s) 16, 51, 385, 391, 729
TseFI GTSAC 4 cut(s) 46, 380, 544, 818
TseI GCWGC 2 cut(s) 35, 343
Tsp45I GTSAC 4 cut(s) 46, 380, 544, 818
TspDTI ATGAA 1 cut(s) 586
TspGWI ACGGA 2 cut(s) 77, 442
TspRI CASTG 5 cut(s) 16, 51, 385, 391, 729
Tth111I GACNNNGTC 1 cut(s) 52
VneI GTGCAC 2 cut(s) 362, 720
XapI RAATTY 3 cut(s) 222, 495, 593
XceI RCATGY 1 cut(s) 205
XspI CTAG 1 cut(s) 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.