Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0028435

Physical Location & Seq

Genomic Coordinates Forward (+)

9530915 .. 9532860

Gene Structure 1946 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1123400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 801 bp

ATGCTCGAGAAGGCCTTGAGTGTCCAGGAGTCCTACACTGCTGCTGATCTCGAAATGTGGGGTTTAGAATTTGAACCCAAGCCTGACTCTCTCCTGATTTACTATTTGTTCAACAAGCTCATCGGAAAGCCACTTCCAACGGTAGAGATGATCAAACACCTTGTCTCCGGGAAGAAGAATTTTCCGGATCCCACTTTTATACCGCCGGAAAACTTCTCTTTTGGATCGGAAAAGAACAAAGCGTTCTTTTTTGTTCCATTCGTGGATGAAGAGGCTGATTCTTCCCTGAGGTTCACTGTTCGGGGGAGCTTTTGGCGGTTTTCTAGTGAGAAGAGTATTAACCATCTTCACAATGGTGAAGAGGTTCGTATCGGGACTGCAAGAACCTTTATCTTTTTTAAGAATATACAAGAGGAGGGTGGTTATGAGATGGTTGAATATAAGCTTCTGAACTCTAAGGCCCTTGGAATCGATCCAAGGCTAATACATTCAAGATCGTTCAATGATCTGCTCCAACTCTACTCCATCGTTGCCATTACATGCCATGACGGCAATTTGGAGAAGATCAAGAAGGGTATCGTGGCCCCTGCGCTGCTTACTGGTGGAGGTCATCAGATTATTCTGCCTCCCGATGCCGACATTGGAGCCAAGGGATCCATTGCTCCGCTTATCGACCACATCTCAGGCAACCCAGACAGCCCAGCTCCAAGTCCCGCTCCTCAACTTGGATTATTTGGACTAGAAACGGTTTCCATTCTTGCACGCACCACGGGGGCTGCTGGGGAAGCTTCCACCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0008150 GO:0008324 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015662 GO:0016020 GO:0016021 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031224 GO:0031226 GO:0034220 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0046873 GO:0051179 GO:0051234 GO:0055085 GO:0070588 GO:0070838 GO:0071944 GO:0072511 GO:0090662 GO:0098655 GO:0098660 GO:0098662 GO:0099131 GO:0099132

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cation_ATPase_C E1-E2_ATPase

Protein Analysis

267

Amino Acids

29.2

Weight (kDa)

5.54

Isoelectric Point (pI)

38.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	21 - 149	1.3e-08	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0028435)

Species	Orthologous Gene IDs
malus_domestica	MD09G1123300.v1.1 MD09G1123400.v1.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	716
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	203, 316, 665, 714
AclWI	GGATC	6 cut(s)	182, 195, 232, 467, 648, 661
AcsI	RAATTY	2 cut(s)	68, 178
AfiI	CCNNNNNNNGG	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	74, 112, 437, 492, 502
AjnI	CCWGG	1 cut(s)	24
AleI	CACNNNNGTG	1 cut(s)	354
AluBI	AGCT	5 cut(s)	118, 309, 445, 704, 788
AluI	AGCT	5 cut(s)	118, 309, 445, 704, 788
Alw26I	GTCTC	1 cut(s)	169
AlwI	GGATC	6 cut(s)	182, 195, 232, 467, 648, 661
Ama87I	CYCGRG	1 cut(s)	5
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	3 cut(s)	12, 459, 582
ApeKI	GCWGC	3 cut(s)	41, 592, 776
ApoI	RAATTY	2 cut(s)	68, 178
ArsI	GACNNNNNNTTYG	2 cut(s)	147, 179
Asp700I	GAANNNNTTC	1 cut(s)	363
AspLEI	GCGC	1 cut(s)	592
AspS9I	GGNCC	2 cut(s)	460, 583
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	368
AvaI	CYCGRG	1 cut(s)	5
AxyI	CCTNAGG	1 cut(s)	287
BamHI	GGATCC	2 cut(s)	187, 653
BbvI	GCAGC	3 cut(s)	28, 579, 763
BccI	CCATC	3 cut(s)	351, 424, 533
BceAI	ACGGC	1 cut(s)	565
BciT130I	CCWGG	1 cut(s)	26
BclI	TGATCA	1 cut(s)	150
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	169
BfaI	CTAG	2 cut(s)	324, 740
BglI	GCCNNNNNGGC	1 cut(s)	549
BisI	GCNGC	3 cut(s)	42, 593, 777
BlsI	GCNGC	3 cut(s)	43, 594, 778
Bme1390I	CCNGG	2 cut(s)	26, 169
BmeT110I	CYCGRG	1 cut(s)	5
BmgT120I	GGNCC	2 cut(s)	460, 583
BmiI	GGNNCC	4 cut(s)	189, 585, 646, 655
BmrFI	CCNGG	2 cut(s)	26, 169
BmsI	GCATC	1 cut(s)	622
BpuEI	CTTGAG	1 cut(s)	37
BpuMI	CCSGG	1 cut(s)	169
Bsa29I	ATCGAT	1 cut(s)	471
BsaJI	CCNNGG	4 cut(s)	463, 476, 648, 768
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	1 cut(s)	725
Bse1I	ACTGG	1 cut(s)	604
Bse21I	CCTNAGG	1 cut(s)	287
Bse3DI	GCAATG	1 cut(s)	657
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	1 cut(s)	26
BseCI	ATCGAT	1 cut(s)	471
BseDI	CCNNGG	4 cut(s)	463, 476, 648, 768
BseGI	GGATG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	725
BseMI	GCAATG	1 cut(s)	657
BseMII	CTCAG	2 cut(s)	278, 696
BseNI	ACTGG	1 cut(s)	604
BseRI	GAGGAG	2 cut(s)	428, 708
BseXI	GCAGC	3 cut(s)	28, 579, 763
BseYI	CCCAGC	2 cut(s)	700, 779
BshFI	GGCC	3 cut(s)	14, 461, 584
BshVI	ATCGAT	1 cut(s)	471
BsiHKCI	CYCGRG	1 cut(s)	5
BsiSI	CCGG	3 cut(s)	168, 185, 206
BslFI	GGGAC	2 cut(s)	388, 696
BslI	CCNNNNNNNGG	1 cut(s)	725
BsmAI	GTCTC	1 cut(s)	169
BsmFI	GGGAC	2 cut(s)	388, 696
BsnI	GGCC	3 cut(s)	14, 461, 584
BsoBI	CYCGRG	1 cut(s)	5
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
BspACI	CCGC	4 cut(s)	203, 316, 665, 714
BspANI	GGCC	3 cut(s)	14, 461, 584
BspCNI	CTCAG	2 cut(s)	279, 695
BspDI	ATCGAT	1 cut(s)	471
BspEI	TCCGGA	1 cut(s)	184
BspLI	GGNNCC	4 cut(s)	189, 585, 646, 655
BspPI	GGATC	6 cut(s)	182, 195, 232, 467, 648, 661
BsrBI	CCGCTC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	657
BsrI	ACTGG	1 cut(s)	604
BssECI	CCNNGG	4 cut(s)	463, 476, 648, 768
BssMI	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
BssT1I	CCWWGG	3 cut(s)	463, 476, 648
Bst2UI	CCWGG	1 cut(s)	26
Bst4CI	ACNGT	3 cut(s)	142, 298, 748
Bst6I	CTCTTC	3 cut(s)	264, 326, 354
BstC8I	GCNNGC	1 cut(s)	763
BstDEI	CTNAG	3 cut(s)	287, 456, 682
BstDSI	CCRYGG	1 cut(s)	768
BstF5I	GGATG	1 cut(s)	271
BstHHI	GCGC	1 cut(s)	592
BstKTI	GATC	9 cut(s)	49, 153, 190, 227, 475, 497, 508, 567, 656
BstMAI	GTCTC	1 cut(s)	169
BstMBI	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
BstMWI	GCNNNNNNNGC	2 cut(s)	549, 785
BstNI	CCWGG	1 cut(s)	26
BstNSI	RCATGY	1 cut(s)	543
BstSCI	CCNGG	2 cut(s)	24, 167
BstV1I	GCAGC	3 cut(s)	28, 579, 763
BstX2I	RGATCY	2 cut(s)	187, 653
BstYI	RGATCY	2 cut(s)	187, 653
Bsu15I	ATCGAT	1 cut(s)	471
Bsu36I	CCTNAGG	1 cut(s)	287
BsuRI	GGCC	3 cut(s)	14, 461, 584
BsuTUI	ATCGAT	1 cut(s)	471
BtgI	CCRYGG	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	36
BtsIMutI	CAGTG	2 cut(s)	36, 294
Cac8I	GCNNGC	1 cut(s)	763
CfoI	GCGC	1 cut(s)	592
Cfr13I	GGNCC	2 cut(s)	460, 583
ClaI	ATCGAT	1 cut(s)	471
CviAII	CATG	2 cut(s)	540, 545
DdeI	CTNAG	3 cut(s)	287, 456, 682
DpnI	GATC	9 cut(s)	48, 152, 189, 226, 474, 496, 507, 566, 655
DpnII	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
Eam1104I	CTCTTC	3 cut(s)	264, 326, 354
EarI	CTCTTC	3 cut(s)	264, 326, 354
Eco130I	CCWWGG	3 cut(s)	463, 476, 648
Eco147I	AGGCCT	1 cut(s)	14
Eco81I	CCTNAGG	1 cut(s)	287
Eco88I	CYCGRG	1 cut(s)	5
EcoO109I	RGGNCCY	1 cut(s)	460
EcoRII	CCWGG	1 cut(s)	24
EcoT14I	CCWWGG	3 cut(s)	463, 476, 648
ErhI	CCWWGG	3 cut(s)	463, 476, 648
FaeI	CATG	2 cut(s)	543, 548
FaiI	YATR	6 cut(s)	200, 407, 426, 441, 541, 546
FaqI	GGGAC	2 cut(s)	388, 696
FatI	CATG	2 cut(s)	539, 544
FauI	CCCGC	1 cut(s)	721
FbaI	TGATCA	1 cut(s)	150
Fnu4HI	GCNGC	3 cut(s)	42, 593, 777
FokI	GGATG	1 cut(s)	278
Fsp4HI	GCNGC	3 cut(s)	42, 593, 777
FspBI	CTAG	2 cut(s)	324, 740
GlaI	GCGC	1 cut(s)	591
GluI	GCNGC	3 cut(s)	42, 593, 777
GsaI	CCCAGC	2 cut(s)	704, 783
HaeIII	GGCC	3 cut(s)	14, 461, 584
HapII	CCGG	3 cut(s)	168, 185, 206
HhaI	GCGC	1 cut(s)	592
Hin1II	CATG	2 cut(s)	543, 548
Hin6I	GCGC	1 cut(s)	590
HinP1I	GCGC	1 cut(s)	590
HindIII	AAGCTT	2 cut(s)	443, 786
HinfI	GANTC	4 cut(s)	29, 86, 278, 468
HpaII	CCGG	3 cut(s)	168, 185, 206
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	1 cut(s)	294
Hpy188I	TCNGA	4 cut(s)	125, 229, 450, 615
Hpy188III	TCNNGA	8 cut(s)	7, 50, 94, 185, 373, 492, 568, 629
Hpy8I	GTNNAC	1 cut(s)	294
HpyAV	CCTTC	2 cut(s)	4, 565
HpyCH4III	ACNGT	3 cut(s)	142, 298, 748
HpyCH4V	TGCA	2 cut(s)	380, 761
HpyF10VI	GCNNNNNNNGC	2 cut(s)	549, 785
HpyF3I	CTNAG	3 cut(s)	287, 456, 682
Hsp92II	CATG	2 cut(s)	543, 548
HspAI	GCGC	1 cut(s)	590
Kpn2I	TCCGGA	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	150
Kzo9I	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
LmnI	GCTCC	6 cut(s)	306, 516, 644, 667, 709, 721
Lsp1109I	GCAGC	3 cut(s)	28, 579, 763
LweI	GCATC	1 cut(s)	622
MaeI	CTAG	2 cut(s)	324, 740
MalI	GATC	9 cut(s)	48, 152, 189, 226, 474, 496, 507, 566, 655
MbiI	CCGCTC	1 cut(s)	716
MboI	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
MboII	GAAGA	8 cut(s)	184, 187, 273, 281, 338, 343, 371, 574
MflI	RGATCY	2 cut(s)	187, 653
MluCI	AATT	3 cut(s)	68, 178, 553
MlyI	GAGTC	2 cut(s)	38, 80
MmeI	TCCRAC	2 cut(s)	161, 538
MnlI	CCTC	8 cut(s)	265, 282, 355, 406, 409, 599, 636, 729
MroI	TCCGGA	1 cut(s)	184
MroXI	GAANNNNTTC	1 cut(s)	363
MseI	TTAA	2 cut(s)	339, 399
MslI	CAYNNNNRTG	1 cut(s)	354
MspI	CCGG	3 cut(s)	168, 185, 206
MspR9I	CCNGG	2 cut(s)	26, 169
MvaI	CCWGG	1 cut(s)	26
MwoI	GCNNNNNNNGC	2 cut(s)	549, 785
NciI	CCSGG	1 cut(s)	169
NdeII	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
NlaIII	CATG	2 cut(s)	543, 548
NlaIV	GGNNCC	4 cut(s)	189, 585, 646, 655
NspI	RCATGY	1 cut(s)	543
OliI	CACNNNNGTG	1 cut(s)	354
PaeR7I	CTCGAG	1 cut(s)	5
PceI	AGGCCT	1 cut(s)	14
PdmI	GAANNNNTTC	1 cut(s)	363
PfeI	GAWTC	2 cut(s)	278, 468
PfoI	TCCNGGA	2 cut(s)	24, 167
PkrI	GCNGC	3 cut(s)	43, 594, 778
PleI	GAGTC	2 cut(s)	37, 80
PpsI	GAGTC	2 cut(s)	37, 80
Psp6I	CCWGG	1 cut(s)	24
PspFI	CCCAGC	2 cut(s)	700, 779
PspGI	CCWGG	1 cut(s)	24
PspN4I	GGNNCC	4 cut(s)	189, 585, 646, 655
PspPI	GGNCC	2 cut(s)	460, 583
PsuI	RGATCY	2 cut(s)	187, 653
RseI	CAYNNNNRTG	1 cut(s)	354
SaqAI	TTAA	2 cut(s)	339, 399
SatI	GCNGC	3 cut(s)	42, 593, 777
Sau3AI	GATC	9 cut(s)	46, 150, 187, 224, 472, 494, 505, 564, 653
Sau96I	GGNCC	2 cut(s)	460, 583
SchI	GAGTC	2 cut(s)	38, 80
ScrFI	CCNGG	2 cut(s)	26, 169
SfaNI	GCATC	1 cut(s)	622
Sfr274I	CTCGAG	1 cut(s)	5
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	1 cut(s)	354
SmlI	CTYRAG	2 cut(s)	5, 16
SmoI	CTYRAG	2 cut(s)	5, 16
Sse9I	AATT	3 cut(s)	68, 178, 553
SseBI	AGGCCT	1 cut(s)	14
SsiI	CCGC	4 cut(s)	203, 316, 665, 714
SspMI	CTAG	2 cut(s)	324, 740
StuI	AGGCCT	1 cut(s)	14
StyD4I	CCNGG	2 cut(s)	24, 167
StyI	CCWWGG	3 cut(s)	463, 476, 648
TaaI	ACNGT	3 cut(s)	142, 298, 748
TaqI	TCGA	4 cut(s)	6, 51, 471, 672
TasI	AATT	3 cut(s)	68, 178, 553
TfiI	GAWTC	2 cut(s)	278, 468
Tru1I	TTAA	2 cut(s)	339, 399
Tru9I	TTAA	2 cut(s)	339, 399
TscAI	CASTG	2 cut(s)	43, 301
TseI	GCWGC	3 cut(s)	41, 592, 776
TspDTI	ATGAA	1 cut(s)	282
TspRI	CASTG	2 cut(s)	43, 301
XapI	RAATTY	2 cut(s)	68, 178
XceI	RCATGY	1 cut(s)	543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	350
XhoI	CTCGAG	1 cut(s)	5
XmnI	GAANNNNTTC	1 cut(s)	363
XspI	CTAG	2 cut(s)	324, 740

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.