MD09G1138300.v1.1

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
10741019 .. 10742140
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1138300.v1.1.491

Sequence Viewer

Length: 891 bp
ATGGATGAGATCCGCCTGCTTGATGAAGTGCATCAAAATACTAAGAAGGAACTCCAACAAGTGATATCCAACCTTGAAGAACAGCTCAAGGAACAAAAAGCAGGAGAAGTTGCTTTAAAATCTGAGGTTGAAAATCTCAAGTCTGAGGCTGCTGAGAAACCTTTATTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTCAGCTCACTTTGAAGAAGAGAGCAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACTAAGTGACCTTGAAGCAAAATATTCCACTGCCGTTGCTGAGAAGGACAGATCAGTTGAACAACTTCAGGCTGCAAAAAGGACTATTGAAGATTTAACGCAGCAGCATTCTTCTAAATGGCAGAAACTACAATCTCAGATATTTTCGCTTATGGGTGAGAACCGCCTGCTTGATGAAGTGCATCAAAATACTAAGAAGGAACTCCAGCAAGTGATATCCAACCTTGAAGAACAGCTCAAGGAACAAAAAGCAGGAGAAGTTGCTTTAAAATCTGAGGTTGAAAATCTCAAGTCTGAGGTTGCTGAGAAACCTTTGTTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTCAGCTCACTTTGAAGAAGAGAGCAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGCGTCTACATACGAGTCCAAACTAAGTGACCTTGAAGCAAAATATTCCACTGCCGTTGCTGAGAAGGACGGATCAGTTGAACAACTTCAGGCTGCAAAAAGGACTATTGAAGATTTAACGCAGCAGCATTCTTCTGAAGGGCAGAAACTACAATCTCAGCTACATCTGTTTGCTACAGATATCTTCGCTTATGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

297

Amino Acids

33.64

Weight (kDa)

5.12

Isoelectric Point (pI)

48.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022359)

Species Orthologous Gene IDs
malus_domestica MD09G1138300.v1.1
pyrus_communis pycom09g05910 pycom09g05920 pycom09g05940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 266, 698
AciI CCGC 2 cut(s) 13, 445
AclWI GGATC 2 cut(s) 4, 772
AcsI RAATTY 2 cut(s) 172, 604
AcuI CTGAAG 3 cut(s) 332, 764, 849
AluBI AGCT 9 cut(s) 85, 203, 233, 250, 517, 635, 665, 682, 853
AluI AGCT 9 cut(s) 85, 203, 233, 250, 517, 635, 665, 682, 853
AlwI GGATC 2 cut(s) 4, 772
ApeKI GCWGC 7 cut(s) 149, 353, 382, 385, 785, 814, 817
ApoI RAATTY 2 cut(s) 172, 604
Asp700I GAANNNNTTC 2 cut(s) 345, 777
AsuHPI GGTGA 1 cut(s) 449
BbvCI CCTCAGC 2 cut(s) 234, 666
BbvI GCAGC 7 cut(s) 136, 340, 394, 397, 772, 826, 829
BceAI ACGGC 2 cut(s) 299, 731
BfaI CTAG 2 cut(s) 230, 662
BfmI CTRYAG 1 cut(s) 867
BisI GCNGC 7 cut(s) 150, 354, 383, 386, 786, 815, 818
BlsI GCNGC 7 cut(s) 151, 355, 384, 387, 787, 816, 819
BmsI GCATC 3 cut(s) 40, 472, 682
BpmI CTGGAG 1 cut(s) 470
Bpu10I CCTNAGC 2 cut(s) 234, 666
BpuEI CTTGAG 6 cut(s) 71, 122, 164, 503, 554, 596
BseGI GGATG 1 cut(s) 10
BseXI GCAGC 7 cut(s) 136, 340, 394, 397, 772, 826, 829
BsmI GAATGC 2 cut(s) 388, 820
Bsp143I GATC 3 cut(s) 9, 332, 764
BspACI CCGC 2 cut(s) 13, 445
BspPI GGATC 2 cut(s) 4, 772
BssMI GATC 3 cut(s) 9, 332, 764
Bst6I CTCTTC 2 cut(s) 210, 642
BstC8I GCNNGC 2 cut(s) 17, 449
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 12, 335, 767
BstMBI GATC 3 cut(s) 9, 332, 764
BstSFI CTRYAG 1 cut(s) 867
BstV1I GCAGC 7 cut(s) 136, 340, 394, 397, 772, 826, 829
BstX2I RGATCY 1 cut(s) 9
BstYI RGATCY 1 cut(s) 9
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 2 cut(s) 309, 741
BtsIMutI CAGTG 2 cut(s) 309, 741
Cac8I GCNNGC 2 cut(s) 17, 449
CseI GACGC 1 cut(s) 684
CspCI CAANNNNNGTGG 4 cut(s) 298, 333, 730, 765
DpnI GATC 3 cut(s) 11, 334, 766
DpnII GATC 3 cut(s) 9, 332, 764
DraI TTTAAA 2 cut(s) 117, 549
Eam1104I CTCTTC 2 cut(s) 210, 642
EarI CTCTTC 2 cut(s) 210, 642
Eco32I GATATC 3 cut(s) 66, 498, 874
Eco57I CTGAAG 3 cut(s) 332, 764, 849
EcoRI GAATTC 2 cut(s) 172, 604
EcoRV GATATC 3 cut(s) 66, 498, 874
FaiI YATR 6 cut(s) 245, 271, 434, 677, 703, 885
FblI GTMKAC 2 cut(s) 266, 698
Fnu4HI GCNGC 7 cut(s) 150, 354, 383, 386, 786, 815, 818
FokI GGATG 1 cut(s) 17
Fsp4HI GCNGC 7 cut(s) 150, 354, 383, 386, 786, 815, 818
FspBI CTAG 2 cut(s) 230, 662
GluI GCNGC 7 cut(s) 150, 354, 383, 386, 786, 815, 818
GsuI CTGGAG 1 cut(s) 470
HgaI GACGC 1 cut(s) 684
HindIII AAGCTT 2 cut(s) 248, 680
HinfI GANTC 2 cut(s) 275, 707
HphI GGTGA 1 cut(s) 449
Hpy166II GTNNAC 2 cut(s) 267, 699
Hpy188I TCNGA 6 cut(s) 124, 145, 420, 556, 577, 829
Hpy8I GTNNAC 2 cut(s) 267, 699
HpyAV CCTTC 5 cut(s) 40, 319, 472, 751, 824
HpyCH4V TGCA 8 cut(s) 31, 169, 190, 356, 463, 601, 622, 788
Kzo9I GATC 3 cut(s) 9, 332, 764
LpnPI CCDG 7 cut(s) 29, 87, 335, 461, 500, 519, 767
Lsp1109I GCAGC 7 cut(s) 136, 340, 394, 397, 772, 826, 829
LweI GCATC 3 cut(s) 40, 472, 682
MaeI CTAG 2 cut(s) 230, 662
MaeIII GTNAC 2 cut(s) 287, 719
MalI GATC 3 cut(s) 11, 334, 766
MboI GATC 3 cut(s) 9, 332, 764
MflI RGATCY 1 cut(s) 9
MluCI AATT 2 cut(s) 172, 604
MlyI GAGTC 2 cut(s) 284, 716
MmeI TCCRAC 3 cut(s) 79, 93, 525
MnlI CCTC 6 cut(s) 118, 139, 229, 550, 571, 661
MroXI GAANNNNTTC 2 cut(s) 345, 777
MseI TTAA 6 cut(s) 116, 252, 377, 548, 684, 809
Mva1269I GAATGC 2 cut(s) 388, 820
NdeII GATC 3 cut(s) 9, 332, 764
NmuCI GTSAC 2 cut(s) 287, 719
PctI GAATGC 2 cut(s) 388, 820
PdmI GAANNNNTTC 2 cut(s) 345, 777
PkrI GCNGC 7 cut(s) 151, 355, 384, 387, 787, 816, 819
PleI GAGTC 2 cut(s) 283, 715
PpsI GAGTC 2 cut(s) 283, 715
PsuI RGATCY 1 cut(s) 9
SaqAI TTAA 6 cut(s) 116, 252, 377, 548, 684, 809
SatI GCNGC 7 cut(s) 150, 354, 383, 386, 786, 815, 818
Sau3AI GATC 3 cut(s) 9, 332, 764
SchI GAGTC 2 cut(s) 284, 716
SfaNI GCATC 3 cut(s) 40, 472, 682
SfcI CTRYAG 1 cut(s) 867
SmlI CTYRAG 6 cut(s) 86, 137, 179, 518, 569, 611
SmoI CTYRAG 6 cut(s) 86, 137, 179, 518, 569, 611
Sse9I AATT 2 cut(s) 172, 604
SsiI CCGC 2 cut(s) 13, 445
SspI AATATT 2 cut(s) 305, 737
SspMI CTAG 2 cut(s) 230, 662
TasI AATT 2 cut(s) 172, 604
Tru1I TTAA 6 cut(s) 116, 252, 377, 548, 684, 809
Tru9I TTAA 6 cut(s) 116, 252, 377, 548, 684, 809
TscAI CASTG 2 cut(s) 316, 748
TseFI GTSAC 2 cut(s) 287, 719
TseI GCWGC 7 cut(s) 149, 353, 382, 385, 785, 814, 817
Tsp45I GTSAC 2 cut(s) 287, 719
TspDTI ATGAA 2 cut(s) 39, 471
TspGWI ACGGA 1 cut(s) 777
TspRI CASTG 2 cut(s) 316, 748
XapI RAATTY 2 cut(s) 172, 604
XmiI GTMKAC 2 cut(s) 266, 698
XmnI GAANNNNTTC 2 cut(s) 345, 777
XspI CTAG 2 cut(s) 230, 662
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.