pycom09g05910

BEST Arabidopsis thaliana protein match is

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
4389575 .. 4392616
3042 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g05910.3

Sequence Viewer

Length: 2949 bp
ATGGTTATTAGCTACATCTGTTTGCCACAGATAGTTTTGCACCTCCAGCGACAGATATCCGAACTTAAAGAACAGCTCAACCAACAAAGAGCACGAGAAGCTTCTTTAATATATGAGGTTAGAAATCTCAAGGCTGTGGCTGCTGAGAAACCTTTATTGCAGAATTCTCTCAAAGAACTGCAAACCAAGTCAACAACCATTGAAGAAGAGAGAAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATGCAAGTCCAAACAACTTGACCTTGAAGCAAAATATTCCACTGCCGTTGCTGAGAAGCACAAATCAGTTGAACAACTTCAGGATGCAGAAAGGACTATTGAAGATTTAACGCAGCAGCATTCTTCTCAAGGGCAGAAACTACAATCGCAGGTTTGCACCAAAAATTTTTGTAATTATTTTATATCTTCGCTTATGGATGAGAACCGCCTGCTTAATGAAGTGCTTCAAAATACTAAGAAGGAACTCCACCAAGTGATATCCAACCTTAAAGAAAAGCTCAAGGAACAAAAAGCAGGAGAAGCTGCTTTAAAATCTGAGGTTAAAAATCTCAAGGCTGAGGCTGCTGAGAAATCTTTATTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTTAGCTCACTGTGAAGAAGAGAGCAGAAGACTAGCTGAGGCAAATAAAAAGCGTAAAGAAGATGTGTCTACATGCAAGTCCAAACAACGTGACCTTGAAGCAAAATATTCCACTGCCGTTGCTGAGAAGCACAAATCAGTTGAACAACTTCAGGATGCAGAAAGGACTATTGAAGATTTAACGCAGCAGCATTCTTCTCAAGGGCAGAAACTACAATCTCAGGTTTGCACCAAACATTTTTGTAATTATTTTGCGGCTAAATATTGTTGCTTTATGGTCATTAGCTACATCTGTTTGCCACAGATATCTTCGCTTATAGATGAGAACCGCCTGCTTAATGAAGTGCATCAAAATACTAAGAAGGAACTCCAGCTAGTGATATCCAACCTTGAAGAACAGCTCAAGGAACAAAAAGCAGGAGAAGCTACTTTAAAATCTGAGGTTAAAAATCTCAAGGTTGAGGCTGCTGAGAAACCTTTATTGCAGAATTCTCTCAAGGAACTGCAAAACAAGTTAGCTCACTGTGAAGAAGAGAGAAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATCCAAGTCCAAACAACGTGACCTTGAAGCAAAATATTCCACTGCCGTTGCTGAGATGCACAAATCAGTTGAACAACTTCAGGATGCAAAAAAGACTATTGAAGATTTAACGCAGCAGCATTATTCTCAAGGGCAGAAACTACAATCTCAGGTTTGCACCAAACATTTTTGTAATTATTTTGCGGCTAAATATTGTTGCTTTATGGTCATTAGCTACATCTGTTTGCCACAGATATCTTCGCTTATGGATGAGAACCGCCAGCTTAATGAAGTGCATCAAAATACTAAGAAGGAACTCCAGCTAGTGATATCCAACCTTGAAGAACAGCTCAAGGAACAAAAAGCTGAGGCTGCTGAGAAGCCTTTATTGCAGAATTCTCTCAAGGAACTGCAAAACAAGTTAGCTCACTGTGAAGAAGAAAGCAGAAAACTAGTTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTATTGCTGAGAAGGATGAATCAGTTGAAAAACTTCAGGCTGCAAAAAAGACTATTGAAGATTTAATGCAACAACATTCTTCTCAAGGGCAGAAACTACAATCTCAGGTTTGCACCAAACTTTTTTGTAATTATTTTGCAGCTAAATACTATTGCTTTATGGTTATTAGCTACATCTCTTCGCCACAGATATCTTCGCTTACCGATGAGAACAACCTGCTTGATAAAGTGCATCAGAATACTAAGAAGGAACTCCAGCTAGCGATATCTAACCTTGAAGAACAGCTCAAGGAACAAAAAGCAAGAGAAGCTACTTTAAAATCTGAGGTTGAAAATCTCAAGGCTGAGGCTGCTGAGAAGCCTTTATTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTCAGCTCACTTTGAAGAAAAGAGCAGAAAACTAGTTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCAAAATATTCCACTGCTGTTGCTGAGAATGATGAATCAGTTGAACAACTTCAGGCTGCAAAAAGGACTATTGAAGATTTAATGCAGCAGCATTCTTCTCAAGGGCAGAAACTACAATCTCAGGTTTGCACCAAACTTTTTTGTAATTATTTTGCGGCTAAATACTATTGCTTTATGGTTATTAGCTACATCTGTTCGCCACAGATATCTTCACTTACCGATGAGAACAACCTGCTTAATGAAGTGCATCAGAATACTAAGAAGGAACTCCAGCTAGCGATATCTAACCTTGAAGAACAGCTCAAGGAACAAAAAACAGGAGAAGCTGCTTTAAAATCTGAGGTTGAAAATCTCAAGGCTGAGGTTGTTGAGAAGCCTTTATTGCAGAATTCTCTCAAGGAACTGCAAACCAAGTCAGCTCACTTTGAAGAAGAGAGCAGAAAACTAGCTGAGGCAAATATAAAGCTTAAAGAAGATGTGTCTACATACGAGTCCAAACAAAGTGACCTTGAAGCGAAATATTCCACTGCTGTTGCTGAGAATGATGAATCAGTTGAACAACTTCAGGCTACAAAAACGACTATTGAAGATTTAATGCAGCAGCATTCTTCTCAATGGCAGAAACTACAATCTCAGGTTTGCACCAAACTTTTTTGTAATTATTTTGCGGCTAAAAGCATTAAGGCGGCTGCAAAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

983

Amino Acids

112.33

Weight (kDa)

6.37

Isoelectric Point (pI)

52.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0022359)

Species Orthologous Gene IDs
malus_domestica MD09G1138300.v1.1
pyrus_communis pycom09g05910 pycom09g05920 pycom09g05940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 3 cut(s) 400, 1974, 2487
AccI GTMKAC 6 cut(s) 257, 719, 1232, 1703, 2216, 2729
AciI CCGC 8 cut(s) 466, 905, 979, 1418, 1492, 2402, 2915, 2933
AcsI RAATTY 7 cut(s) 163, 424, 625, 1138, 1609, 2122, 2635
AcuI CTGAAG 6 cut(s) 323, 785, 1298, 1769, 2282, 2795
AdeI CACNNNGTG 1 cut(s) 514
AhlI ACTAGT 2 cut(s) 1666, 2179
Alw21I GWGCWC 1 cut(s) 94
ApoI RAATTY 7 cut(s) 163, 424, 625, 1138, 1609, 2122, 2635
Asp700I GAANNNNTTC 7 cut(s) 336, 483, 798, 1311, 1782, 2295, 2808
AsuNHI GCTAGC 2 cut(s) 2008, 2521
BauI CACGAG 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 685
Bbv12I GWGCWC 1 cut(s) 94
BbvCI CCTCAGC 8 cut(s) 225, 597, 687, 1200, 1581, 2094, 2607, 2697
BceAI ACGGC 3 cut(s) 290, 752, 1265
BcuI ACTAGT 2 cut(s) 1666, 2179
BfuAI ACCTGC 3 cut(s) 400, 1974, 2487
BmsI GCATC 8 cut(s) 334, 796, 1006, 1281, 1309, 1519, 1990, 2503
BmtI GCTAGC 2 cut(s) 2012, 2525
BpiI GAAGAC 1 cut(s) 685
BpmI CTGGAG 5 cut(s) 29, 1004, 1517, 1988, 2501
Bpu10I CCTNAGC 8 cut(s) 225, 597, 687, 1200, 1581, 2094, 2607, 2697
BseGI GGATG 7 cut(s) 349, 463, 811, 1235, 1324, 1489, 1771
BsiHKAI GWGCWC 1 cut(s) 94
BsmI GAATGC 4 cut(s) 379, 841, 2338, 2851
Bsp1286I GDGCHC 1 cut(s) 94
BspACI CCGC 8 cut(s) 466, 905, 979, 1418, 1492, 2402, 2915, 2933
BspMI ACCTGC 3 cut(s) 400, 1974, 2487
BspOI GCTAGC 2 cut(s) 2012, 2525
BssSI CACGAG 1 cut(s) 93
Bst2BI CACGAG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 662, 1175, 1646
Bst6I CTCTTC 5 cut(s) 201, 663, 1176, 1933, 2673
BstC8I GCNNGC 5 cut(s) 470, 983, 1496, 2010, 2523
BstF5I GGATG 7 cut(s) 349, 463, 811, 1235, 1324, 1489, 1771
BstNSI RCATGY 2 cut(s) 264, 726
BstV2I GAAGAC 1 cut(s) 685
BtsCI GGATG 7 cut(s) 349, 463, 811, 1235, 1324, 1489, 1771
BtsI GCAGTG 6 cut(s) 300, 762, 1275, 1746, 2259, 2772
BtsIMutI CAGTG 9 cut(s) 300, 658, 762, 1171, 1275, 1642, 1746, 2259, 2772
BveI ACCTGC 3 cut(s) 400, 1974, 2487
Cac8I GCNNGC 5 cut(s) 470, 983, 1496, 2010, 2523
CviAII CATG 2 cut(s) 261, 723
DraI TTTAAA 4 cut(s) 570, 1083, 2067, 2580
DraIII CACNNNGTG 1 cut(s) 514
Eam1104I CTCTTC 5 cut(s) 201, 663, 1176, 1933, 2673
EarI CTCTTC 5 cut(s) 201, 663, 1176, 1933, 2673
Eco57I CTGAAG 6 cut(s) 323, 785, 1298, 1769, 2282, 2795
EcoRI GAATTC 6 cut(s) 163, 625, 1138, 1609, 2122, 2635
FaeI CATG 2 cut(s) 264, 726
FatI CATG 2 cut(s) 260, 722
FblI GTMKAC 6 cut(s) 257, 719, 1232, 1703, 2216, 2729
FokI GGATG 7 cut(s) 356, 470, 818, 1222, 1331, 1496, 1778
GsuI CTGGAG 5 cut(s) 29, 1004, 1517, 1988, 2501
Hin1II CATG 2 cut(s) 264, 726
HincII GTYRAC 1 cut(s) 192
HindII GTYRAC 1 cut(s) 192
HindIII AAGCTT 6 cut(s) 99, 239, 1214, 1685, 2198, 2711
HinfI GANTC 6 cut(s) 1712, 1769, 2225, 2282, 2738, 2795
Hpy166II GTNNAC 7 cut(s) 192, 258, 720, 1233, 1704, 2217, 2730
Hpy188I TCNGA 7 cut(s) 61, 577, 1090, 1986, 2074, 2499, 2587
Hpy188III TCNNGA 3 cut(s) 341, 803, 1316
Hpy8I GTNNAC 7 cut(s) 192, 258, 720, 1233, 1704, 2217, 2730
HpyAV CCTTC 6 cut(s) 493, 1006, 1519, 1756, 1990, 2503
HpyCH4III ACNGT 3 cut(s) 662, 1175, 1646
HpyCH4IV ACGT 2 cut(s) 739, 1252
HpySE526I ACGT 2 cut(s) 739, 1252
Hsp92II CATG 2 cut(s) 264, 726
LweI GCATC 8 cut(s) 334, 796, 1006, 1281, 1309, 1519, 1990, 2503
MaeII ACGT 2 cut(s) 739, 1252
MaeIII GTNAC 5 cut(s) 740, 1253, 1724, 2237, 2750
MhlI GDGCHC 1 cut(s) 94
MlyI GAGTC 3 cut(s) 1721, 2234, 2747
MmeI TCCRAC 3 cut(s) 546, 1059, 1572
MroXI GAANNNNTTC 7 cut(s) 336, 483, 798, 1311, 1782, 2295, 2808
Mva1269I GAATGC 4 cut(s) 379, 841, 2338, 2851
NheI GCTAGC 2 cut(s) 2008, 2521
NlaIII CATG 2 cut(s) 264, 726
NmuCI GTSAC 5 cut(s) 740, 1253, 1724, 2237, 2750
NspI RCATGY 2 cut(s) 264, 726
PctI GAATGC 4 cut(s) 379, 841, 2338, 2851
PdmI GAANNNNTTC 7 cut(s) 336, 483, 798, 1311, 1782, 2295, 2808
PfeI GAWTC 3 cut(s) 1769, 2282, 2795
PleI GAGTC 3 cut(s) 1720, 2233, 2746
PpsI GAGTC 3 cut(s) 1720, 2233, 2746
SchI GAGTC 3 cut(s) 1721, 2234, 2747
SduI GDGCHC 1 cut(s) 94
SfaNI GCATC 8 cut(s) 334, 796, 1006, 1281, 1309, 1519, 1990, 2503
SpeI ACTAGT 2 cut(s) 1666, 2179
SsiI CCGC 8 cut(s) 466, 905, 979, 1418, 1492, 2402, 2915, 2933
SspI AATATT 8 cut(s) 296, 758, 914, 1271, 1427, 1742, 2255, 2768
TaaI ACNGT 3 cut(s) 662, 1175, 1646
TaiI ACGT 2 cut(s) 742, 1255
TauI GCSGC 5 cut(s) 908, 1421, 2405, 2918, 2936
TfiI GAWTC 3 cut(s) 1769, 2282, 2795
TscAI CASTG 9 cut(s) 307, 665, 769, 1178, 1282, 1649, 1753, 2266, 2779
TseFI GTSAC 5 cut(s) 740, 1253, 1724, 2237, 2750
Tsp45I GTSAC 5 cut(s) 740, 1253, 1724, 2237, 2750
TspDTI ATGAA 7 cut(s) 492, 1005, 1518, 1782, 2295, 2502, 2808
TspRI CASTG 9 cut(s) 307, 665, 769, 1178, 1282, 1649, 1753, 2266, 2779
XapI RAATTY 7 cut(s) 163, 424, 625, 1138, 1609, 2122, 2635
XceI RCATGY 2 cut(s) 264, 726
XmiI GTMKAC 6 cut(s) 257, 719, 1232, 1703, 2216, 2729
XmnI GAANNNNTTC 7 cut(s) 336, 483, 798, 1311, 1782, 2295, 2808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.